Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/e429cb1dc1f02cb5b7cdf4939e4840/659_bGW-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/846596a0f0caccee41be52a94d7afc/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/846596a0f0caccee41be52a94d7afc/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/51245fe44ac7ff1f52b5e094f5a41f/659_bGW-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 376416460
[W::hts_idx_load3] The index file is older than the data file: 659_bGW-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	376416460
Known Splicing Events:	372892110
Partial Novel Splicing Events:	1676145
Novel Splicing Events:	1679286
Filtered Splicing Events:	168919

Total splicing  Junctions:	651683
Known Splicing Junctions:	281530
Partial Novel Splicing Junctions:	169851
Novel Splicing Junctions:	200302

===================================================================
Create BED file ...
Create Interact file ...