Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx121241M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_cIX-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 659_cIX-T1-TRNA-1_A23MVY2LT4_2.md.bam --METRICS_FILE 659_cIX-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:39:43.174 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:39:43 GMT 2026] MarkDuplicates --INPUT 659_cIX-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 659_cIX-T1-TRNA-1_A23MVY2LT4_2.md.bam --METRICS_FILE 659_cIX-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:39:43 GMT 2026] Executing as ?@nf-4c6080941d0ab3b634d3bc212d9d1cc2-dcb06-l2m8k on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:39:43 MarkDuplicates Start of doWork freeMemory: 105129416; totalMemory: 134217728; maxMemory: 127137742848
INFO 2026-06-08 09:39:43 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:39:43 MarkDuplicates Will retain up to 460643995 data points before spilling to disk.
INFO 2026-06-08 09:39:49 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,752,836
INFO 2026-06-08 09:39:49 MarkDuplicates Tracking 3725 as yet unmatched pairs. 358 records in RAM.
INFO 2026-06-08 09:39:52 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 3s. Last read position: chr1:8,863,317
INFO 2026-06-08 09:39:52 MarkDuplicates Tracking 7857 as yet unmatched pairs. 1285 records in RAM.
INFO 2026-06-08 09:39:54 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:12,262,004
INFO 2026-06-08 09:39:54 MarkDuplicates Tracking 10347 as yet unmatched pairs. 604 records in RAM.
INFO 2026-06-08 09:39:57 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:16,622,076
INFO 2026-06-08 09:39:57 MarkDuplicates Tracking 12484 as yet unmatched pairs. 215 records in RAM.
INFO 2026-06-08 09:40:00 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:20,655,458
INFO 2026-06-08 09:40:00 MarkDuplicates Tracking 16080 as yet unmatched pairs. 846 records in RAM.
INFO 2026-06-08 09:40:02 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:22,637,619
INFO 2026-06-08 09:40:02 MarkDuplicates Tracking 18566 as yet unmatched pairs. 349 records in RAM.
INFO 2026-06-08 09:40:04 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:25,563,728
INFO 2026-06-08 09:40:04 MarkDuplicates Tracking 21300 as yet unmatched pairs. 243 records in RAM.
INFO 2026-06-08 09:40:06 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:28,742,895
INFO 2026-06-08 09:40:06 MarkDuplicates Tracking 24452 as yet unmatched pairs. 473 records in RAM.
INFO 2026-06-08 09:40:08 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:32,222,567
INFO 2026-06-08 09:40:08 MarkDuplicates Tracking 28047 as yet unmatched pairs. 975 records in RAM.
INFO 2026-06-08 09:40:10 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:36,179,666
INFO 2026-06-08 09:40:10 MarkDuplicates Tracking 31250 as yet unmatched pairs. 1215 records in RAM.
INFO 2026-06-08 09:40:11 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:39,380,331
INFO 2026-06-08 09:40:11 MarkDuplicates Tracking 34409 as yet unmatched pairs. 1839 records in RAM.
INFO 2026-06-08 09:40:13 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:39,563,881
INFO 2026-06-08 09:40:13 MarkDuplicates Tracking 37133 as yet unmatched pairs. 1926 records in RAM.
INFO 2026-06-08 09:40:16 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:43,894,383
INFO 2026-06-08 09:40:16 MarkDuplicates Tracking 38407 as yet unmatched pairs. 392 records in RAM.
INFO 2026-06-08 09:40:18 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:51,269,966
INFO 2026-06-08 09:40:18 MarkDuplicates Tracking 41601 as yet unmatched pairs. 701 records in RAM.
INFO 2026-06-08 09:40:20 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:62,631,301
INFO 2026-06-08 09:40:20 MarkDuplicates Tracking 43963 as yet unmatched pairs. 309 records in RAM.
INFO 2026-06-08 09:40:22 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:84,570,708
INFO 2026-06-08 09:40:22 MarkDuplicates Tracking 46334 as yet unmatched pairs. 192 records in RAM.
INFO 2026-06-08 09:40:25 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:96,679,212
INFO 2026-06-08 09:40:25 MarkDuplicates Tracking 48947 as yet unmatched pairs. 98 records in RAM.
INFO 2026-06-08 09:40:26 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:110,401,434
INFO 2026-06-08 09:40:26 MarkDuplicates Tracking 52208 as yet unmatched pairs. 698 records in RAM.
INFO 2026-06-08 09:40:29 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:116,388,682
INFO 2026-06-08 09:40:29 MarkDuplicates Tracking 54840 as yet unmatched pairs. 729 records in RAM.
INFO 2026-06-08 09:40:31 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:119,940,612
INFO 2026-06-08 09:40:31 MarkDuplicates Tracking 59335 as yet unmatched pairs. 2333 records in RAM.
INFO 2026-06-08 09:40:32 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:120,833,707
INFO 2026-06-08 09:40:32 MarkDuplicates Tracking 60725 as yet unmatched pairs. 1780 records in RAM.
INFO 2026-06-08 09:40:34 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 2s. Last read position: chr1:146,066,452
INFO 2026-06-08 09:40:34 MarkDuplicates Tracking 61375 as yet unmatched pairs. 424 records in RAM.
INFO 2026-06-08 09:40:37 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:146,960,235
INFO 2026-06-08 09:40:37 MarkDuplicates Tracking 62296 as yet unmatched pairs. 508 records in RAM.
INFO 2026-06-08 09:40:39 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:148,559,020
INFO 2026-06-08 09:40:39 MarkDuplicates Tracking 63388 as yet unmatched pairs. 497 records in RAM.
INFO 2026-06-08 09:40:40 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:149,430,933
INFO 2026-06-08 09:40:40 MarkDuplicates Tracking 65053 as yet unmatched pairs. 1000 records in RAM.
INFO 2026-06-08 09:40:41 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:149,947,152
INFO 2026-06-08 09:40:41 MarkDuplicates Tracking 66205 as yet unmatched pairs. 564 records in RAM.
INFO 2026-06-08 09:40:43 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:150,622,815
INFO 2026-06-08 09:40:43 MarkDuplicates Tracking 70391 as yet unmatched pairs. 1922 records in RAM.
INFO 2026-06-08 09:40:45 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:151,067,373
INFO 2026-06-08 09:40:45 MarkDuplicates Tracking 73462 as yet unmatched pairs. 2511 records in RAM.
INFO 2026-06-08 09:40:47 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 2s. Last read position: chr1:152,213,910
INFO 2026-06-08 09:40:47 MarkDuplicates Tracking 74628 as yet unmatched pairs. 789 records in RAM.
INFO 2026-06-08 09:40:49 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 2s. Last read position: chr1:153,687,288
INFO 2026-06-08 09:40:49 MarkDuplicates Tracking 76377 as yet unmatched pairs. 346 records in RAM.
INFO 2026-06-08 09:40:51 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 2s. Last read position: chr1:154,173,144
INFO 2026-06-08 09:40:51 MarkDuplicates Tracking 81494 as yet unmatched pairs. 2563 records in RAM.
INFO 2026-06-08 09:40:55 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 3s. Last read position: chr1:154,708,061
INFO 2026-06-08 09:40:55 MarkDuplicates Tracking 81987 as yet unmatched pairs. 327 records in RAM.
INFO 2026-06-08 09:40:57 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 2s. Last read position: chr1:155,208,714
INFO 2026-06-08 09:40:57 MarkDuplicates Tracking 84904 as yet unmatched pairs. 247 records in RAM.
INFO 2026-06-08 09:40:59 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 2s. Last read position: chr1:155,672,666
INFO 2026-06-08 09:40:59 MarkDuplicates Tracking 88508 as yet unmatched pairs. 1127 records in RAM.
INFO 2026-06-08 09:41:01 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:156,115,156
INFO 2026-06-08 09:41:01 MarkDuplicates Tracking 96269 as yet unmatched pairs. 5637 records in RAM.
INFO 2026-06-08 09:41:03 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 2s. Last read position: chr1:156,136,388
INFO 2026-06-08 09:41:03 MarkDuplicates Tracking 107789 as yet unmatched pairs. 13607 records in RAM.
INFO 2026-06-08 09:41:05 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:156,293,080
INFO 2026-06-08 09:41:05 MarkDuplicates Tracking 98311 as yet unmatched pairs. 930 records in RAM.
INFO 2026-06-08 09:41:07 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:156,670,063
INFO 2026-06-08 09:41:07 MarkDuplicates Tracking 102717 as yet unmatched pairs. 2285 records in RAM.
INFO 2026-06-08 09:41:09 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 2s. Last read position: chr1:156,734,159
INFO 2026-06-08 09:41:09 MarkDuplicates Tracking 104300 as yet unmatched pairs. 600 records in RAM.
INFO 2026-06-08 09:41:11 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 2s. Last read position: chr1:160,292,565
INFO 2026-06-08 09:41:11 MarkDuplicates Tracking 110367 as yet unmatched pairs. 3771 records in RAM.
INFO 2026-06-08 09:41:13 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 2s. Last read position: chr1:161,542,425
INFO 2026-06-08 09:41:13 MarkDuplicates Tracking 110338 as yet unmatched pairs. 1015 records in RAM.
INFO 2026-06-08 09:41:15 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 2s. Last read position: chr1:166,849,924
INFO 2026-06-08 09:41:15 MarkDuplicates Tracking 112883 as yet unmatched pairs. 830 records in RAM.
INFO 2026-06-08 09:41:18 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 2s. Last read position: chr1:171,532,872
INFO 2026-06-08 09:41:18 MarkDuplicates Tracking 115515 as yet unmatched pairs. 621 records in RAM.
INFO 2026-06-08 09:41:20 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:175,006,820
INFO 2026-06-08 09:41:20 MarkDuplicates Tracking 119565 as yet unmatched pairs. 2112 records in RAM.
INFO 2026-06-08 09:41:22 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 2s. Last read position: chr1:180,990,040
INFO 2026-06-08 09:41:22 MarkDuplicates Tracking 120588 as yet unmatched pairs. 488 records in RAM.
INFO 2026-06-08 09:41:24 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:183,865,986
INFO 2026-06-08 09:41:24 MarkDuplicates Tracking 123292 as yet unmatched pairs. 207 records in RAM.
INFO 2026-06-08 09:41:27 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 2s. Last read position: chr1:186,337,083
INFO 2026-06-08 09:41:27 MarkDuplicates Tracking 127124 as yet unmatched pairs. 1560 records in RAM.
INFO 2026-06-08 09:41:29 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:200,409,450
INFO 2026-06-08 09:41:29 MarkDuplicates Tracking 127984 as yet unmatched pairs. 53 records in RAM.
INFO 2026-06-08 09:41:30 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:201,484,613
INFO 2026-06-08 09:41:30 MarkDuplicates Tracking 141762 as yet unmatched pairs. 10733 records in RAM.
INFO 2026-06-08 09:41:32 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:201,900,721
INFO 2026-06-08 09:41:32 MarkDuplicates Tracking 136407 as yet unmatched pairs. 2729 records in RAM.
INFO 2026-06-08 09:41:33 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:203,180,489
INFO 2026-06-08 09:41:33 MarkDuplicates Tracking 144423 as yet unmatched pairs. 7931 records in RAM.
INFO 2026-06-08 09:41:35 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:203,709,430
INFO 2026-06-08 09:41:35 MarkDuplicates Tracking 141508 as yet unmatched pairs. 2348 records in RAM.
INFO 2026-06-08 09:41:36 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:204,974,256
INFO 2026-06-08 09:41:36 MarkDuplicates Tracking 142120 as yet unmatched pairs. 383 records in RAM.
INFO 2026-06-08 09:41:38 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:207,321,786
INFO 2026-06-08 09:41:38 MarkDuplicates Tracking 146448 as yet unmatched pairs. 1980 records in RAM.
INFO 2026-06-08 09:41:40 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr1:214,376,308
INFO 2026-06-08 09:41:40 MarkDuplicates Tracking 147613 as yet unmatched pairs. 330 records in RAM.
INFO 2026-06-08 09:41:42 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr1:222,664,074
INFO 2026-06-08 09:41:42 MarkDuplicates Tracking 150730 as yet unmatched pairs. 943 records in RAM.
INFO 2026-06-08 09:41:43 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr1:225,406,771
INFO 2026-06-08 09:41:43 MarkDuplicates Tracking 153486 as yet unmatched pairs. 1117 records in RAM.
INFO 2026-06-08 09:41:45 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr1:226,737,184
INFO 2026-06-08 09:41:45 MarkDuplicates Tracking 155774 as yet unmatched pairs. 740 records in RAM.
INFO 2026-06-08 09:41:46 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr1:229,636,017
INFO 2026-06-08 09:41:46 MarkDuplicates Tracking 158520 as yet unmatched pairs. 317 records in RAM.
INFO 2026-06-08 09:41:49 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 2s. Last read position: chr1:234,609,295
INFO 2026-06-08 09:41:49 MarkDuplicates Tracking 164950 as yet unmatched pairs. 3158 records in RAM.
INFO 2026-06-08 09:41:51 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 2s. Last read position: chr1:241,517,305
INFO 2026-06-08 09:41:51 MarkDuplicates Tracking 164968 as yet unmatched pairs. 277 records in RAM.
INFO 2026-06-08 09:41:53 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr1:244,863,692
INFO 2026-06-08 09:41:53 MarkDuplicates Tracking 168690 as yet unmatched pairs. 1464 records in RAM.
INFO 2026-06-08 09:41:56 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 3s. Last read position: chr2:1,687,690
INFO 2026-06-08 09:41:56 MarkDuplicates Tracking 170942 as yet unmatched pairs. 169861 records in RAM.
INFO 2026-06-08 09:41:57 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:15,536,514
INFO 2026-06-08 09:41:57 MarkDuplicates Tracking 173557 as yet unmatched pairs. 172454 records in RAM.
INFO 2026-06-08 09:42:00 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 2s. Last read position: chr2:26,283,027
INFO 2026-06-08 09:42:00 MarkDuplicates Tracking 176482 as yet unmatched pairs. 175374 records in RAM.
INFO 2026-06-08 09:42:02 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 2s. Last read position: chr2:27,153,304
INFO 2026-06-08 09:42:02 MarkDuplicates Tracking 179219 as yet unmatched pairs. 178091 records in RAM.
INFO 2026-06-08 09:42:04 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 2s. Last read position: chr2:28,752,149
INFO 2026-06-08 09:42:04 MarkDuplicates Tracking 193823 as yet unmatched pairs. 192681 records in RAM.
INFO 2026-06-08 09:42:07 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 2s. Last read position: chr2:29,225,508
INFO 2026-06-08 09:42:07 MarkDuplicates Tracking 190301 as yet unmatched pairs. 189140 records in RAM.
INFO 2026-06-08 09:42:10 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 3s. Last read position: chr2:32,916,255
INFO 2026-06-08 09:42:10 MarkDuplicates Tracking 254420 as yet unmatched pairs. 181797 records in RAM.
INFO 2026-06-08 09:42:12 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:42:12 MarkDuplicates Tracking 546083 as yet unmatched pairs. 166371 records in RAM.
INFO 2026-06-08 09:42:15 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:42:15 MarkDuplicates Tracking 1239766 as yet unmatched pairs. 130083 records in RAM.
INFO 2026-06-08 09:42:18 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:42:18 MarkDuplicates Tracking 1460705 as yet unmatched pairs. 117943 records in RAM.
INFO 2026-06-08 09:42:19 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:42:19 MarkDuplicates Tracking 1464150 as yet unmatched pairs. 117792 records in RAM.
INFO 2026-06-08 09:42:21 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 2s. Last read position: chr2:38,568,276
INFO 2026-06-08 09:42:21 MarkDuplicates Tracking 1546654 as yet unmatched pairs. 112367 records in RAM.
INFO 2026-06-08 09:42:23 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 2s. Last read position: chr2:47,160,600
INFO 2026-06-08 09:42:23 MarkDuplicates Tracking 1544700 as yet unmatched pairs. 110390 records in RAM.
INFO 2026-06-08 09:42:25 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 2s. Last read position: chr2:55,334,588
INFO 2026-06-08 09:42:25 MarkDuplicates Tracking 1540887 as yet unmatched pairs. 106569 records in RAM.
INFO 2026-06-08 09:42:27 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:65,104,734
INFO 2026-06-08 09:42:27 MarkDuplicates Tracking 1538359 as yet unmatched pairs. 104022 records in RAM.
INFO 2026-06-08 09:42:29 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 2s. Last read position: chr2:70,087,963
INFO 2026-06-08 09:42:29 MarkDuplicates Tracking 1537465 as yet unmatched pairs. 103105 records in RAM.
INFO 2026-06-08 09:42:32 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 2s. Last read position: chr2:73,491,335
INFO 2026-06-08 09:42:32 MarkDuplicates Tracking 1533036 as yet unmatched pairs. 98659 records in RAM.
INFO 2026-06-08 09:42:34 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 2s. Last read position: chr2:74,461,446
INFO 2026-06-08 09:42:34 MarkDuplicates Tracking 1530615 as yet unmatched pairs. 96229 records in RAM.
INFO 2026-06-08 09:42:36 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 2s. Last read position: chr2:86,052,922
INFO 2026-06-08 09:42:36 MarkDuplicates Tracking 1527272 as yet unmatched pairs. 92862 records in RAM.
INFO 2026-06-08 09:42:38 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 2s. Last read position: chr2:96,291,754
INFO 2026-06-08 09:42:38 MarkDuplicates Tracking 1525525 as yet unmatched pairs. 91096 records in RAM.
INFO 2026-06-08 09:42:40 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 2s. Last read position: chr2:99,593,693
INFO 2026-06-08 09:42:40 MarkDuplicates Tracking 1522478 as yet unmatched pairs. 88039 records in RAM.
INFO 2026-06-08 09:42:43 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 2s. Last read position: chr2:105,307,752
INFO 2026-06-08 09:42:43 MarkDuplicates Tracking 1519643 as yet unmatched pairs. 85186 records in RAM.
INFO 2026-06-08 09:42:45 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 2s. Last read position: chr2:109,835,050
INFO 2026-06-08 09:42:45 MarkDuplicates Tracking 1517443 as yet unmatched pairs. 82973 records in RAM.
INFO 2026-06-08 09:42:47 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:120,968,872
INFO 2026-06-08 09:42:47 MarkDuplicates Tracking 1515798 as yet unmatched pairs. 81309 records in RAM.
INFO 2026-06-08 09:42:50 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 2s. Last read position: chr2:144,208,653
INFO 2026-06-08 09:42:50 MarkDuplicates Tracking 1512870 as yet unmatched pairs. 78342 records in RAM.
INFO 2026-06-08 09:42:51 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:161,507,323
INFO 2026-06-08 09:42:51 MarkDuplicates Tracking 1510284 as yet unmatched pairs. 75719 records in RAM.
INFO 2026-06-08 09:42:53 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:175,141,455
INFO 2026-06-08 09:42:53 MarkDuplicates Tracking 1507718 as yet unmatched pairs. 73128 records in RAM.
INFO 2026-06-08 09:42:54 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:186,590,441
INFO 2026-06-08 09:42:54 MarkDuplicates Tracking 1506465 as yet unmatched pairs. 71862 records in RAM.
INFO 2026-06-08 09:42:56 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:188,998,271
INFO 2026-06-08 09:42:56 MarkDuplicates Tracking 1508720 as yet unmatched pairs. 74107 records in RAM.
INFO 2026-06-08 09:42:58 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:189,053,468
INFO 2026-06-08 09:42:58 MarkDuplicates Tracking 1499897 as yet unmatched pairs. 65259 records in RAM.
INFO 2026-06-08 09:42:59 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:200,329,469
INFO 2026-06-08 09:42:59 MarkDuplicates Tracking 1496444 as yet unmatched pairs. 61786 records in RAM.
INFO 2026-06-08 09:43:02 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 2s. Last read position: chr2:206,306,695
INFO 2026-06-08 09:43:02 MarkDuplicates Tracking 1493205 as yet unmatched pairs. 58538 records in RAM.
INFO 2026-06-08 09:43:05 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 2s. Last read position: chr2:215,362,065
INFO 2026-06-08 09:43:05 MarkDuplicates Tracking 1516102 as yet unmatched pairs. 81401 records in RAM.
INFO 2026-06-08 09:43:07 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 2s. Last read position: chr2:215,371,971
INFO 2026-06-08 09:43:07 MarkDuplicates Tracking 1519896 as yet unmatched pairs. 85193 records in RAM.
INFO 2026-06-08 09:43:09 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 2s. Last read position: chr2:215,375,322
INFO 2026-06-08 09:43:09 MarkDuplicates Tracking 1500740 as yet unmatched pairs. 66037 records in RAM.
INFO 2026-06-08 09:43:11 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr2:215,379,238
INFO 2026-06-08 09:43:11 MarkDuplicates Tracking 1514184 as yet unmatched pairs. 79475 records in RAM.
INFO 2026-06-08 09:43:13 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,766
INFO 2026-06-08 09:43:13 MarkDuplicates Tracking 1496039 as yet unmatched pairs. 61318 records in RAM.
INFO 2026-06-08 09:43:15 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr2:215,397,180
INFO 2026-06-08 09:43:15 MarkDuplicates Tracking 1510643 as yet unmatched pairs. 75922 records in RAM.
INFO 2026-06-08 09:43:17 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr2:215,406,492
INFO 2026-06-08 09:43:17 MarkDuplicates Tracking 1491623 as yet unmatched pairs. 56900 records in RAM.
INFO 2026-06-08 09:43:18 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr2:215,409,988
INFO 2026-06-08 09:43:18 MarkDuplicates Tracking 1495463 as yet unmatched pairs. 60721 records in RAM.
INFO 2026-06-08 09:43:20 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 2s. Last read position: chr2:215,423,470
INFO 2026-06-08 09:43:20 MarkDuplicates Tracking 1489771 as yet unmatched pairs. 55018 records in RAM.
INFO 2026-06-08 09:43:23 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr2:215,431,840
INFO 2026-06-08 09:43:23 MarkDuplicates Tracking 1484391 as yet unmatched pairs. 49626 records in RAM.
INFO 2026-06-08 09:43:25 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr2:216,499,965
INFO 2026-06-08 09:43:25 MarkDuplicates Tracking 1469434 as yet unmatched pairs. 34661 records in RAM.
INFO 2026-06-08 09:43:28 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 3s. Last read position: chr2:217,818,438
INFO 2026-06-08 09:43:28 MarkDuplicates Tracking 1465101 as yet unmatched pairs. 30297 records in RAM.
INFO 2026-06-08 09:43:30 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 2s. Last read position: chr2:218,400,147
INFO 2026-06-08 09:43:30 MarkDuplicates Tracking 1460068 as yet unmatched pairs. 25246 records in RAM.
INFO 2026-06-08 09:43:32 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr2:219,418,526
INFO 2026-06-08 09:43:32 MarkDuplicates Tracking 1479483 as yet unmatched pairs. 44645 records in RAM.
INFO 2026-06-08 09:43:34 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 2s. Last read position: chr2:219,448,726
INFO 2026-06-08 09:43:34 MarkDuplicates Tracking 1453219 as yet unmatched pairs. 18369 records in RAM.
INFO 2026-06-08 09:43:36 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 2s. Last read position: chr2:223,977,600
INFO 2026-06-08 09:43:36 MarkDuplicates Tracking 1448994 as yet unmatched pairs. 14131 records in RAM.
INFO 2026-06-08 09:43:38 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 2s. Last read position: chr2:231,398,573
INFO 2026-06-08 09:43:38 MarkDuplicates Tracking 1445889 as yet unmatched pairs. 11011 records in RAM.
INFO 2026-06-08 09:43:40 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr2:237,341,136
INFO 2026-06-08 09:43:40 MarkDuplicates Tracking 1447101 as yet unmatched pairs. 12213 records in RAM.
INFO 2026-06-08 09:43:42 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 2s. Last read position: chr2:237,372,129
INFO 2026-06-08 09:43:42 MarkDuplicates Tracking 1447807 as yet unmatched pairs. 12910 records in RAM.
INFO 2026-06-08 09:43:44 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 2s. Last read position: chr2:238,025,354
INFO 2026-06-08 09:43:44 MarkDuplicates Tracking 1438337 as yet unmatched pairs. 3434 records in RAM.
INFO 2026-06-08 09:43:48 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 3s. Last read position: chr3:4,516,500
INFO 2026-06-08 09:43:48 MarkDuplicates Tracking 1435336 as yet unmatched pairs. 81498 records in RAM.
INFO 2026-06-08 09:43:50 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 2s. Last read position: chr3:9,801,685
INFO 2026-06-08 09:43:50 MarkDuplicates Tracking 1433582 as yet unmatched pairs. 79724 records in RAM.
INFO 2026-06-08 09:43:53 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr3:12,839,421
INFO 2026-06-08 09:43:53 MarkDuplicates Tracking 1432738 as yet unmatched pairs. 78862 records in RAM.
INFO 2026-06-08 09:43:55 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 2s. Last read position: chr3:18,420,870
INFO 2026-06-08 09:43:55 MarkDuplicates Tracking 1426229 as yet unmatched pairs. 72335 records in RAM.
INFO 2026-06-08 09:43:57 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 2s. Last read position: chr3:33,114,265
INFO 2026-06-08 09:43:57 MarkDuplicates Tracking 1427792 as yet unmatched pairs. 73856 records in RAM.
INFO 2026-06-08 09:43:59 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 2s. Last read position: chr3:39,074,833
INFO 2026-06-08 09:43:59 MarkDuplicates Tracking 1420820 as yet unmatched pairs. 66856 records in RAM.
INFO 2026-06-08 09:44:02 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 2s. Last read position: chr3:41,233,658
INFO 2026-06-08 09:44:02 MarkDuplicates Tracking 1420548 as yet unmatched pairs. 66566 records in RAM.
INFO 2026-06-08 09:44:04 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr3:45,782,024
INFO 2026-06-08 09:44:04 MarkDuplicates Tracking 1415048 as yet unmatched pairs. 61042 records in RAM.
INFO 2026-06-08 09:44:06 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 2s. Last read position: chr3:47,848,941
INFO 2026-06-08 09:44:06 MarkDuplicates Tracking 1412731 as yet unmatched pairs. 58709 records in RAM.
INFO 2026-06-08 09:44:08 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr3:48,570,664
INFO 2026-06-08 09:44:08 MarkDuplicates Tracking 1411048 as yet unmatched pairs. 57020 records in RAM.
INFO 2026-06-08 09:44:10 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 2s. Last read position: chr3:49,014,911
INFO 2026-06-08 09:44:10 MarkDuplicates Tracking 1407766 as yet unmatched pairs. 53725 records in RAM.
INFO 2026-06-08 09:44:12 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 2s. Last read position: chr3:49,357,529
INFO 2026-06-08 09:44:12 MarkDuplicates Tracking 1408009 as yet unmatched pairs. 53950 records in RAM.
INFO 2026-06-08 09:44:14 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 2s. Last read position: chr3:50,252,125
INFO 2026-06-08 09:44:14 MarkDuplicates Tracking 1402397 as yet unmatched pairs. 48304 records in RAM.
INFO 2026-06-08 09:44:16 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr3:52,247,060
INFO 2026-06-08 09:44:16 MarkDuplicates Tracking 1398085 as yet unmatched pairs. 43981 records in RAM.
INFO 2026-06-08 09:44:18 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr3:53,235,156
INFO 2026-06-08 09:44:18 MarkDuplicates Tracking 1394819 as yet unmatched pairs. 40700 records in RAM.
INFO 2026-06-08 09:44:20 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr3:58,132,876
INFO 2026-06-08 09:44:20 MarkDuplicates Tracking 1392715 as yet unmatched pairs. 38579 records in RAM.
INFO 2026-06-08 09:44:22 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 2s. Last read position: chr3:69,038,661
INFO 2026-06-08 09:44:22 MarkDuplicates Tracking 1389787 as yet unmatched pairs. 35617 records in RAM.
INFO 2026-06-08 09:44:24 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr3:75,215,460
INFO 2026-06-08 09:44:24 MarkDuplicates Tracking 1386319 as yet unmatched pairs. 32143 records in RAM.
INFO 2026-06-08 09:44:25 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr3:99,849,559
INFO 2026-06-08 09:44:25 MarkDuplicates Tracking 1387811 as yet unmatched pairs. 33621 records in RAM.
INFO 2026-06-08 09:44:27 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr3:112,630,113
INFO 2026-06-08 09:44:27 MarkDuplicates Tracking 1382795 as yet unmatched pairs. 28597 records in RAM.
INFO 2026-06-08 09:44:28 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr3:122,368,261
INFO 2026-06-08 09:44:28 MarkDuplicates Tracking 1379028 as yet unmatched pairs. 24823 records in RAM.
INFO 2026-06-08 09:44:30 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr3:123,682,270
INFO 2026-06-08 09:44:30 MarkDuplicates Tracking 1384355 as yet unmatched pairs. 30123 records in RAM.
INFO 2026-06-08 09:44:32 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 2s. Last read position: chr3:126,158,577
INFO 2026-06-08 09:44:32 MarkDuplicates Tracking 1373684 as yet unmatched pairs. 19438 records in RAM.
INFO 2026-06-08 09:44:35 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 2s. Last read position: chr3:132,450,651
INFO 2026-06-08 09:44:35 MarkDuplicates Tracking 1370954 as yet unmatched pairs. 16679 records in RAM.
INFO 2026-06-08 09:44:36 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr3:143,055,071
INFO 2026-06-08 09:44:36 MarkDuplicates Tracking 1368303 as yet unmatched pairs. 14009 records in RAM.
INFO 2026-06-08 09:44:38 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr3:159,764,512
INFO 2026-06-08 09:44:38 MarkDuplicates Tracking 1365475 as yet unmatched pairs. 11157 records in RAM.
INFO 2026-06-08 09:44:40 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr3:180,984,696
INFO 2026-06-08 09:44:40 MarkDuplicates Tracking 1362996 as yet unmatched pairs. 8639 records in RAM.
INFO 2026-06-08 09:44:41 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr3:185,586,431
INFO 2026-06-08 09:44:41 MarkDuplicates Tracking 1360005 as yet unmatched pairs. 5644 records in RAM.
INFO 2026-06-08 09:44:43 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr3:188,609,809
INFO 2026-06-08 09:44:43 MarkDuplicates Tracking 1362445 as yet unmatched pairs. 8064 records in RAM.
INFO 2026-06-08 09:44:45 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr3:197,829,658
INFO 2026-06-08 09:44:45 MarkDuplicates Tracking 1354912 as yet unmatched pairs. 497 records in RAM.
INFO 2026-06-08 09:44:47 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 2s. Last read position: chr4:2,829,480
INFO 2026-06-08 09:44:47 MarkDuplicates Tracking 1351505 as yet unmatched pairs. 45808 records in RAM.
INFO 2026-06-08 09:44:50 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 2s. Last read position: chr4:7,772,943
INFO 2026-06-08 09:44:50 MarkDuplicates Tracking 1350197 as yet unmatched pairs. 44461 records in RAM.
INFO 2026-06-08 09:44:52 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 2s. Last read position: chr4:13,602,478
INFO 2026-06-08 09:44:52 MarkDuplicates Tracking 1345851 as yet unmatched pairs. 40083 records in RAM.
INFO 2026-06-08 09:44:54 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 2s. Last read position: chr4:25,369,080
INFO 2026-06-08 09:44:54 MarkDuplicates Tracking 1342615 as yet unmatched pairs. 36824 records in RAM.
INFO 2026-06-08 09:44:57 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 2s. Last read position: chr4:38,827,902
INFO 2026-06-08 09:44:57 MarkDuplicates Tracking 1339821 as yet unmatched pairs. 34001 records in RAM.
INFO 2026-06-08 09:44:59 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr4:47,576,869
INFO 2026-06-08 09:44:59 MarkDuplicates Tracking 1337781 as yet unmatched pairs. 31957 records in RAM.
INFO 2026-06-08 09:45:01 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr4:57,031,275
INFO 2026-06-08 09:45:01 MarkDuplicates Tracking 1338875 as yet unmatched pairs. 33016 records in RAM.
INFO 2026-06-08 09:45:03 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 2s. Last read position: chr4:77,005,674
INFO 2026-06-08 09:45:03 MarkDuplicates Tracking 1332531 as yet unmatched pairs. 26640 records in RAM.
INFO 2026-06-08 09:45:05 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 2s. Last read position: chr4:86,027,372
INFO 2026-06-08 09:45:05 MarkDuplicates Tracking 1329458 as yet unmatched pairs. 23549 records in RAM.
INFO 2026-06-08 09:45:07 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 2s. Last read position: chr4:94,523,724
INFO 2026-06-08 09:45:07 MarkDuplicates Tracking 1328314 as yet unmatched pairs. 22393 records in RAM.
INFO 2026-06-08 09:45:10 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 2s. Last read position: chr4:112,145,528
INFO 2026-06-08 09:45:10 MarkDuplicates Tracking 1324000 as yet unmatched pairs. 18043 records in RAM.
INFO 2026-06-08 09:45:12 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr4:119,030,726
INFO 2026-06-08 09:45:12 MarkDuplicates Tracking 1330078 as yet unmatched pairs. 24108 records in RAM.
INFO 2026-06-08 09:45:14 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 2s. Last read position: chr4:121,045,797
INFO 2026-06-08 09:45:14 MarkDuplicates Tracking 1318887 as yet unmatched pairs. 12906 records in RAM.
INFO 2026-06-08 09:45:16 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr4:127,812,815
INFO 2026-06-08 09:45:16 MarkDuplicates Tracking 1316557 as yet unmatched pairs. 10570 records in RAM.
INFO 2026-06-08 09:45:18 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr4:146,509,958
INFO 2026-06-08 09:45:18 MarkDuplicates Tracking 1313638 as yet unmatched pairs. 7637 records in RAM.
INFO 2026-06-08 09:45:19 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr4:168,442,309
INFO 2026-06-08 09:45:19 MarkDuplicates Tracking 1311003 as yet unmatched pairs. 4978 records in RAM.
INFO 2026-06-08 09:45:21 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr4:185,502,243
INFO 2026-06-08 09:45:21 MarkDuplicates Tracking 1310645 as yet unmatched pairs. 4607 records in RAM.
INFO 2026-06-08 09:45:23 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 2s. Last read position: chr5:5,460,516
INFO 2026-06-08 09:45:23 MarkDuplicates Tracking 1305369 as yet unmatched pairs. 91071 records in RAM.
INFO 2026-06-08 09:45:25 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 2s. Last read position: chr5:14,297,161
INFO 2026-06-08 09:45:25 MarkDuplicates Tracking 1306464 as yet unmatched pairs. 92148 records in RAM.
INFO 2026-06-08 09:45:28 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 2s. Last read position: chr5:14,419,864
INFO 2026-06-08 09:45:28 MarkDuplicates Tracking 1305998 as yet unmatched pairs. 91678 records in RAM.
INFO 2026-06-08 09:45:30 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr5:14,507,997
INFO 2026-06-08 09:45:30 MarkDuplicates Tracking 1303139 as yet unmatched pairs. 88812 records in RAM.
INFO 2026-06-08 09:45:31 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr5:34,823,971
INFO 2026-06-08 09:45:31 MarkDuplicates Tracking 1294701 as yet unmatched pairs. 80351 records in RAM.
INFO 2026-06-08 09:45:33 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr5:40,681,050
INFO 2026-06-08 09:45:33 MarkDuplicates Tracking 1291039 as yet unmatched pairs. 76676 records in RAM.
INFO 2026-06-08 09:45:35 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr5:54,519,567
INFO 2026-06-08 09:45:35 MarkDuplicates Tracking 1289340 as yet unmatched pairs. 74959 records in RAM.
INFO 2026-06-08 09:45:36 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr5:66,076,376
INFO 2026-06-08 09:45:36 MarkDuplicates Tracking 1286046 as yet unmatched pairs. 71640 records in RAM.
INFO 2026-06-08 09:45:38 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr5:71,532,407
INFO 2026-06-08 09:45:38 MarkDuplicates Tracking 1283691 as yet unmatched pairs. 69272 records in RAM.
INFO 2026-06-08 09:45:40 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 2s. Last read position: chr5:72,199,711
INFO 2026-06-08 09:45:40 MarkDuplicates Tracking 1285069 as yet unmatched pairs. 70641 records in RAM.
INFO 2026-06-08 09:45:42 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 2s. Last read position: chr5:77,433,177
INFO 2026-06-08 09:45:42 MarkDuplicates Tracking 1278828 as yet unmatched pairs. 64382 records in RAM.
INFO 2026-06-08 09:45:45 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 2s. Last read position: chr5:83,490,158
INFO 2026-06-08 09:45:45 MarkDuplicates Tracking 1278679 as yet unmatched pairs. 64217 records in RAM.
INFO 2026-06-08 09:45:46 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr5:83,963,248
INFO 2026-06-08 09:45:46 MarkDuplicates Tracking 1281791 as yet unmatched pairs. 67315 records in RAM.
INFO 2026-06-08 09:45:48 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr5:95,755,446
INFO 2026-06-08 09:45:48 MarkDuplicates Tracking 1270647 as yet unmatched pairs. 56135 records in RAM.
INFO 2026-06-08 09:45:50 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr5:109,337,234
INFO 2026-06-08 09:45:50 MarkDuplicates Tracking 1269325 as yet unmatched pairs. 54794 records in RAM.
INFO 2026-06-08 09:45:51 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr5:122,775,098
INFO 2026-06-08 09:45:51 MarkDuplicates Tracking 1265487 as yet unmatched pairs. 50937 records in RAM.
INFO 2026-06-08 09:45:53 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr5:131,675,928
INFO 2026-06-08 09:45:53 MarkDuplicates Tracking 1263026 as yet unmatched pairs. 48455 records in RAM.
INFO 2026-06-08 09:45:55 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr5:134,708,730
INFO 2026-06-08 09:45:55 MarkDuplicates Tracking 1260067 as yet unmatched pairs. 45485 records in RAM.
INFO 2026-06-08 09:45:56 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr5:138,467,100
INFO 2026-06-08 09:45:56 MarkDuplicates Tracking 1257233 as yet unmatched pairs. 42645 records in RAM.
INFO 2026-06-08 09:45:58 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr5:140,535,366
INFO 2026-06-08 09:45:58 MarkDuplicates Tracking 1254719 as yet unmatched pairs. 40112 records in RAM.
INFO 2026-06-08 09:46:00 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 2s. Last read position: chr5:141,180,102
INFO 2026-06-08 09:46:00 MarkDuplicates Tracking 1252628 as yet unmatched pairs. 38020 records in RAM.
INFO 2026-06-08 09:46:02 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 2s. Last read position: chr5:141,477,890
INFO 2026-06-08 09:46:02 MarkDuplicates Tracking 1250962 as yet unmatched pairs. 36343 records in RAM.
INFO 2026-06-08 09:46:04 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 2s. Last read position: chr5:148,425,520
INFO 2026-06-08 09:46:04 MarkDuplicates Tracking 1246603 as yet unmatched pairs. 31972 records in RAM.
INFO 2026-06-08 09:46:07 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr5:150,135,670
INFO 2026-06-08 09:46:07 MarkDuplicates Tracking 1248193 as yet unmatched pairs. 33559 records in RAM.
INFO 2026-06-08 09:46:08 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr5:150,446,930
INFO 2026-06-08 09:46:08 MarkDuplicates Tracking 1244372 as yet unmatched pairs. 29725 records in RAM.
INFO 2026-06-08 09:46:10 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr5:151,673,129
INFO 2026-06-08 09:46:10 MarkDuplicates Tracking 1240303 as yet unmatched pairs. 25647 records in RAM.
INFO 2026-06-08 09:46:12 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr5:160,354,955
INFO 2026-06-08 09:46:12 MarkDuplicates Tracking 1234655 as yet unmatched pairs. 19970 records in RAM.
INFO 2026-06-08 09:46:13 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr5:171,392,775
INFO 2026-06-08 09:46:13 MarkDuplicates Tracking 1252125 as yet unmatched pairs. 37431 records in RAM.
INFO 2026-06-08 09:46:15 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr5:173,944,967
INFO 2026-06-08 09:46:15 MarkDuplicates Tracking 1230512 as yet unmatched pairs. 15813 records in RAM.
INFO 2026-06-08 09:46:17 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr5:177,484,124
INFO 2026-06-08 09:46:17 MarkDuplicates Tracking 1230868 as yet unmatched pairs. 16162 records in RAM.
INFO 2026-06-08 09:46:19 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 2s. Last read position: chr5:179,705,839
INFO 2026-06-08 09:46:19 MarkDuplicates Tracking 1226939 as yet unmatched pairs. 12229 records in RAM.
INFO 2026-06-08 09:46:20 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr5:179,823,016
INFO 2026-06-08 09:46:20 MarkDuplicates Tracking 1240522 as yet unmatched pairs. 25784 records in RAM.
INFO 2026-06-08 09:46:22 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr5:179,836,501
INFO 2026-06-08 09:46:22 MarkDuplicates Tracking 1236192 as yet unmatched pairs. 21444 records in RAM.
INFO 2026-06-08 09:46:24 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr5:181,242,265
INFO 2026-06-08 09:46:24 MarkDuplicates Tracking 1218594 as yet unmatched pairs. 3838 records in RAM.
INFO 2026-06-08 09:46:26 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr6:16,326,833
INFO 2026-06-08 09:46:26 MarkDuplicates Tracking 1212292 as yet unmatched pairs. 71908 records in RAM.
INFO 2026-06-08 09:46:28 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr6:26,445,932
INFO 2026-06-08 09:46:28 MarkDuplicates Tracking 1209354 as yet unmatched pairs. 68949 records in RAM.
INFO 2026-06-08 09:46:29 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr6:30,703,793
INFO 2026-06-08 09:46:29 MarkDuplicates Tracking 1206861 as yet unmatched pairs. 66449 records in RAM.
INFO 2026-06-08 09:46:31 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 2s. Last read position: chr6:31,644,404
INFO 2026-06-08 09:46:31 MarkDuplicates Tracking 1205963 as yet unmatched pairs. 65542 records in RAM.
INFO 2026-06-08 09:46:33 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr6:31,880,820
INFO 2026-06-08 09:46:33 MarkDuplicates Tracking 1202024 as yet unmatched pairs. 61600 records in RAM.
INFO 2026-06-08 09:46:34 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr6:32,191,799
INFO 2026-06-08 09:46:34 MarkDuplicates Tracking 1199833 as yet unmatched pairs. 59408 records in RAM.
INFO 2026-06-08 09:46:36 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr6:33,415,015
INFO 2026-06-08 09:46:36 MarkDuplicates Tracking 1200178 as yet unmatched pairs. 59744 records in RAM.
INFO 2026-06-08 09:46:37 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr6:36,977,247
INFO 2026-06-08 09:46:37 MarkDuplicates Tracking 1195344 as yet unmatched pairs. 54898 records in RAM.
INFO 2026-06-08 09:46:39 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr6:43,225,783
INFO 2026-06-08 09:46:39 MarkDuplicates Tracking 1191271 as yet unmatched pairs. 50816 records in RAM.
INFO 2026-06-08 09:46:41 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr6:56,472,095
INFO 2026-06-08 09:46:41 MarkDuplicates Tracking 1188457 as yet unmatched pairs. 47970 records in RAM.
INFO 2026-06-08 09:46:43 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 2s. Last read position: chr6:63,711,715
INFO 2026-06-08 09:46:43 MarkDuplicates Tracking 1185944 as yet unmatched pairs. 45443 records in RAM.
INFO 2026-06-08 09:46:44 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr6:75,256,056
INFO 2026-06-08 09:46:44 MarkDuplicates Tracking 1184084 as yet unmatched pairs. 43562 records in RAM.
INFO 2026-06-08 09:46:46 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr6:85,619,340
INFO 2026-06-08 09:46:46 MarkDuplicates Tracking 1181311 as yet unmatched pairs. 40760 records in RAM.
INFO 2026-06-08 09:46:48 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr6:99,410,783
INFO 2026-06-08 09:46:48 MarkDuplicates Tracking 1177962 as yet unmatched pairs. 37386 records in RAM.
INFO 2026-06-08 09:46:50 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 2s. Last read position: chr6:110,442,645
INFO 2026-06-08 09:46:50 MarkDuplicates Tracking 1174968 as yet unmatched pairs. 34370 records in RAM.
INFO 2026-06-08 09:46:51 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr6:117,999,321
INFO 2026-06-08 09:46:51 MarkDuplicates Tracking 1173382 as yet unmatched pairs. 32766 records in RAM.
INFO 2026-06-08 09:46:53 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 2s. Last read position: chr6:127,266,869
INFO 2026-06-08 09:46:53 MarkDuplicates Tracking 1169378 as yet unmatched pairs. 28746 records in RAM.
INFO 2026-06-08 09:46:55 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr6:132,372,608
INFO 2026-06-08 09:46:55 MarkDuplicates Tracking 1168481 as yet unmatched pairs. 27825 records in RAM.
INFO 2026-06-08 09:46:57 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 2s. Last read position: chr6:143,507,325
INFO 2026-06-08 09:46:57 MarkDuplicates Tracking 1164380 as yet unmatched pairs. 23708 records in RAM.
INFO 2026-06-08 09:46:59 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 2s. Last read position: chr6:149,683,557
INFO 2026-06-08 09:46:59 MarkDuplicates Tracking 1161663 as yet unmatched pairs. 20982 records in RAM.
INFO 2026-06-08 09:47:01 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr6:151,352,562
INFO 2026-06-08 09:47:01 MarkDuplicates Tracking 1162107 as yet unmatched pairs. 21415 records in RAM.
INFO 2026-06-08 09:47:04 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 2s. Last read position: chr6:152,208,106
INFO 2026-06-08 09:47:04 MarkDuplicates Tracking 1156291 as yet unmatched pairs. 15586 records in RAM.
INFO 2026-06-08 09:47:06 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr6:157,207,341
INFO 2026-06-08 09:47:06 MarkDuplicates Tracking 1153991 as yet unmatched pairs. 13284 records in RAM.
INFO 2026-06-08 09:47:08 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 2s. Last read position: chr6:159,233,572
INFO 2026-06-08 09:47:08 MarkDuplicates Tracking 1153418 as yet unmatched pairs. 12696 records in RAM.
INFO 2026-06-08 09:47:10 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 2s. Last read position: chr6:160,064,824
INFO 2026-06-08 09:47:10 MarkDuplicates Tracking 1148617 as yet unmatched pairs. 7888 records in RAM.
INFO 2026-06-08 09:47:12 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 2s. Last read position: chr6:167,914,261
INFO 2026-06-08 09:47:12 MarkDuplicates Tracking 1144630 as yet unmatched pairs. 3892 records in RAM.
INFO 2026-06-08 09:47:14 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr6:169,250,783
INFO 2026-06-08 09:47:14 MarkDuplicates Tracking 1142744 as yet unmatched pairs. 1998 records in RAM.
INFO 2026-06-08 09:47:16 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 2s. Last read position: chr7:2,541,386
INFO 2026-06-08 09:47:16 MarkDuplicates Tracking 1138387 as yet unmatched pairs. 89898 records in RAM.
INFO 2026-06-08 09:47:18 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr7:5,388,585
INFO 2026-06-08 09:47:18 MarkDuplicates Tracking 1135652 as yet unmatched pairs. 87154 records in RAM.
INFO 2026-06-08 09:47:20 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,347
INFO 2026-06-08 09:47:20 MarkDuplicates Tracking 1160765 as yet unmatched pairs. 112250 records in RAM.
INFO 2026-06-08 09:47:21 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,552
INFO 2026-06-08 09:47:21 MarkDuplicates Tracking 1143979 as yet unmatched pairs. 95464 records in RAM.
INFO 2026-06-08 09:47:23 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr7:18,496,261
INFO 2026-06-08 09:47:23 MarkDuplicates Tracking 1126443 as yet unmatched pairs. 77910 records in RAM.
INFO 2026-06-08 09:47:25 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 2s. Last read position: chr7:26,206,367
INFO 2026-06-08 09:47:25 MarkDuplicates Tracking 1123949 as yet unmatched pairs. 75403 records in RAM.
INFO 2026-06-08 09:47:27 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 2s. Last read position: chr7:36,390,001
INFO 2026-06-08 09:47:27 MarkDuplicates Tracking 1120986 as yet unmatched pairs. 72423 records in RAM.
INFO 2026-06-08 09:47:30 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 2s. Last read position: chr7:44,107,918
INFO 2026-06-08 09:47:30 MarkDuplicates Tracking 1119306 as yet unmatched pairs. 70719 records in RAM.
INFO 2026-06-08 09:47:32 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 2s. Last read position: chr7:45,075,783
INFO 2026-06-08 09:47:32 MarkDuplicates Tracking 1115133 as yet unmatched pairs. 66539 records in RAM.
INFO 2026-06-08 09:47:34 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 2s. Last read position: chr7:55,202,551
INFO 2026-06-08 09:47:34 MarkDuplicates Tracking 1113907 as yet unmatched pairs. 65308 records in RAM.
INFO 2026-06-08 09:47:36 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr7:72,943,346
INFO 2026-06-08 09:47:36 MarkDuplicates Tracking 1110049 as yet unmatched pairs. 61417 records in RAM.
INFO 2026-06-08 09:47:38 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 2s. Last read position: chr7:74,376,716
INFO 2026-06-08 09:47:38 MarkDuplicates Tracking 1107965 as yet unmatched pairs. 59323 records in RAM.
INFO 2026-06-08 09:47:40 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr7:75,985,697
INFO 2026-06-08 09:47:40 MarkDuplicates Tracking 1106306 as yet unmatched pairs. 57660 records in RAM.
INFO 2026-06-08 09:47:41 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr7:76,303,994
INFO 2026-06-08 09:47:41 MarkDuplicates Tracking 1123790 as yet unmatched pairs. 75132 records in RAM.
INFO 2026-06-08 09:47:43 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr7:88,206,417
INFO 2026-06-08 09:47:43 MarkDuplicates Tracking 1101077 as yet unmatched pairs. 52418 records in RAM.
INFO 2026-06-08 09:47:45 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr7:94,400,232
INFO 2026-06-08 09:47:45 MarkDuplicates Tracking 1105093 as yet unmatched pairs. 56413 records in RAM.
INFO 2026-06-08 09:47:46 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr7:94,417,812
INFO 2026-06-08 09:47:46 MarkDuplicates Tracking 1097703 as yet unmatched pairs. 49019 records in RAM.
INFO 2026-06-08 09:47:48 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr7:96,694,821
INFO 2026-06-08 09:47:48 MarkDuplicates Tracking 1091712 as yet unmatched pairs. 43019 records in RAM.
INFO 2026-06-08 09:47:50 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 2s. Last read position: chr7:100,093,322
INFO 2026-06-08 09:47:50 MarkDuplicates Tracking 1088441 as yet unmatched pairs. 39738 records in RAM.
INFO 2026-06-08 09:47:52 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr7:100,865,786
INFO 2026-06-08 09:47:52 MarkDuplicates Tracking 1085163 as yet unmatched pairs. 36455 records in RAM.
INFO 2026-06-08 09:47:53 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr7:102,354,785
INFO 2026-06-08 09:47:53 MarkDuplicates Tracking 1082229 as yet unmatched pairs. 33490 records in RAM.
INFO 2026-06-08 09:47:55 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr7:103,083,711
INFO 2026-06-08 09:47:55 MarkDuplicates Tracking 1081049 as yet unmatched pairs. 32303 records in RAM.
INFO 2026-06-08 09:47:56 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr7:107,964,599
INFO 2026-06-08 09:47:56 MarkDuplicates Tracking 1079030 as yet unmatched pairs. 30268 records in RAM.
INFO 2026-06-08 09:47:58 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr7:127,652,435
INFO 2026-06-08 09:47:58 MarkDuplicates Tracking 1079195 as yet unmatched pairs. 30428 records in RAM.
INFO 2026-06-08 09:48:00 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr7:128,837,714
INFO 2026-06-08 09:48:00 MarkDuplicates Tracking 1076026 as yet unmatched pairs. 27253 records in RAM.
INFO 2026-06-08 09:48:01 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr7:128,854,567
INFO 2026-06-08 09:48:01 MarkDuplicates Tracking 1072331 as yet unmatched pairs. 23557 records in RAM.
INFO 2026-06-08 09:48:04 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 2s. Last read position: chr7:134,843,921
INFO 2026-06-08 09:48:04 MarkDuplicates Tracking 1069614 as yet unmatched pairs. 20817 records in RAM.
INFO 2026-06-08 09:48:06 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 2s. Last read position: chr7:137,227,840
INFO 2026-06-08 09:48:06 MarkDuplicates Tracking 1068623 as yet unmatched pairs. 19808 records in RAM.
INFO 2026-06-08 09:48:08 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 2s. Last read position: chr7:139,575,157
INFO 2026-06-08 09:48:08 MarkDuplicates Tracking 1061909 as yet unmatched pairs. 13079 records in RAM.
INFO 2026-06-08 09:48:11 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 2s. Last read position: chr7:143,383,287
INFO 2026-06-08 09:48:11 MarkDuplicates Tracking 1062576 as yet unmatched pairs. 13734 records in RAM.
INFO 2026-06-08 09:48:12 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr7:150,719,078
INFO 2026-06-08 09:48:12 MarkDuplicates Tracking 1056202 as yet unmatched pairs. 7344 records in RAM.
INFO 2026-06-08 09:48:14 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 2s. Last read position: chr7:152,176,640
INFO 2026-06-08 09:48:14 MarkDuplicates Tracking 1053321 as yet unmatched pairs. 4458 records in RAM.
INFO 2026-06-08 09:48:15 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr7:158,767,715
INFO 2026-06-08 09:48:15 MarkDuplicates Tracking 1053542 as yet unmatched pairs. 4638 records in RAM.
INFO 2026-06-08 09:48:18 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 2s. Last read position: chr8:11,845,219
INFO 2026-06-08 09:48:18 MarkDuplicates Tracking 1065714 as yet unmatched pairs. 82354 records in RAM.
INFO 2026-06-08 09:48:19 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr8:17,985,478
INFO 2026-06-08 09:48:19 MarkDuplicates Tracking 1044540 as yet unmatched pairs. 61175 records in RAM.
INFO 2026-06-08 09:48:21 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 2s. Last read position: chr8:22,616,195
INFO 2026-06-08 09:48:21 MarkDuplicates Tracking 1042586 as yet unmatched pairs. 59199 records in RAM.
INFO 2026-06-08 09:48:23 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr8:27,605,244
INFO 2026-06-08 09:48:23 MarkDuplicates Tracking 1040429 as yet unmatched pairs. 57034 records in RAM.
INFO 2026-06-08 09:48:25 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 2s. Last read position: chr8:33,389,785
INFO 2026-06-08 09:48:25 MarkDuplicates Tracking 1035739 as yet unmatched pairs. 52336 records in RAM.
INFO 2026-06-08 09:48:28 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 2s. Last read position: chr8:38,414,009
INFO 2026-06-08 09:48:28 MarkDuplicates Tracking 1035841 as yet unmatched pairs. 52431 records in RAM.
INFO 2026-06-08 09:48:30 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 2s. Last read position: chr8:38,820,062
INFO 2026-06-08 09:48:30 MarkDuplicates Tracking 1035777 as yet unmatched pairs. 52358 records in RAM.
INFO 2026-06-08 09:48:32 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 2s. Last read position: chr8:41,611,905
INFO 2026-06-08 09:48:32 MarkDuplicates Tracking 1027613 as yet unmatched pairs. 44188 records in RAM.
INFO 2026-06-08 09:48:34 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 2s. Last read position: chr8:47,877,773
INFO 2026-06-08 09:48:34 MarkDuplicates Tracking 1025221 as yet unmatched pairs. 41785 records in RAM.
INFO 2026-06-08 09:48:37 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 2s. Last read position: chr8:58,601,515
INFO 2026-06-08 09:48:37 MarkDuplicates Tracking 1022026 as yet unmatched pairs. 38579 records in RAM.
INFO 2026-06-08 09:48:39 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 2s. Last read position: chr8:69,624,068
INFO 2026-06-08 09:48:39 MarkDuplicates Tracking 1022678 as yet unmatched pairs. 39218 records in RAM.
INFO 2026-06-08 09:48:41 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 2s. Last read position: chr8:76,852,863
INFO 2026-06-08 09:48:41 MarkDuplicates Tracking 1016597 as yet unmatched pairs. 33124 records in RAM.
INFO 2026-06-08 09:48:43 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 2s. Last read position: chr8:94,765,192
INFO 2026-06-08 09:48:43 MarkDuplicates Tracking 1014510 as yet unmatched pairs. 31034 records in RAM.
INFO 2026-06-08 09:48:46 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 2s. Last read position: chr8:99,013,925
INFO 2026-06-08 09:48:46 MarkDuplicates Tracking 1011595 as yet unmatched pairs. 28113 records in RAM.
INFO 2026-06-08 09:48:48 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr8:102,232,216
INFO 2026-06-08 09:48:48 MarkDuplicates Tracking 1009433 as yet unmatched pairs. 25943 records in RAM.
INFO 2026-06-08 09:48:49 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr8:108,216,446
INFO 2026-06-08 09:48:49 MarkDuplicates Tracking 1008625 as yet unmatched pairs. 25126 records in RAM.
INFO 2026-06-08 09:48:51 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr8:120,342,428
INFO 2026-06-08 09:48:51 MarkDuplicates Tracking 1006189 as yet unmatched pairs. 22686 records in RAM.
INFO 2026-06-08 09:48:53 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 2s. Last read position: chr8:127,738,892
INFO 2026-06-08 09:48:53 MarkDuplicates Tracking 1001298 as yet unmatched pairs. 17784 records in RAM.
INFO 2026-06-08 09:48:56 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 2s. Last read position: chr8:143,269,448
INFO 2026-06-08 09:48:56 MarkDuplicates Tracking 997231 as yet unmatched pairs. 13700 records in RAM.
INFO 2026-06-08 09:48:58 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 2s. Last read position: chr8:143,916,961
INFO 2026-06-08 09:48:58 MarkDuplicates Tracking 995376 as yet unmatched pairs. 11835 records in RAM.
INFO 2026-06-08 09:49:00 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 2s. Last read position: chr8:143,938,214
INFO 2026-06-08 09:49:00 MarkDuplicates Tracking 991931 as yet unmatched pairs. 8377 records in RAM.
INFO 2026-06-08 09:49:02 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 2s. Last read position: chr8:144,360,367
INFO 2026-06-08 09:49:02 MarkDuplicates Tracking 987027 as yet unmatched pairs. 3465 records in RAM.
INFO 2026-06-08 09:49:05 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 3s. Last read position: chr9:2,644,769
INFO 2026-06-08 09:49:05 MarkDuplicates Tracking 982901 as yet unmatched pairs. 74080 records in RAM.
INFO 2026-06-08 09:49:07 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 2s. Last read position: chr9:19,126,217
INFO 2026-06-08 09:49:07 MarkDuplicates Tracking 981126 as yet unmatched pairs. 72280 records in RAM.
INFO 2026-06-08 09:49:10 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 2s. Last read position: chr9:35,056,978
INFO 2026-06-08 09:49:10 MarkDuplicates Tracking 978372 as yet unmatched pairs. 69515 records in RAM.
INFO 2026-06-08 09:49:12 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 2s. Last read position: chr9:35,707,242
INFO 2026-06-08 09:49:12 MarkDuplicates Tracking 976822 as yet unmatched pairs. 67958 records in RAM.
INFO 2026-06-08 09:49:14 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 2s. Last read position: chr9:37,919,843
INFO 2026-06-08 09:49:14 MarkDuplicates Tracking 971374 as yet unmatched pairs. 62506 records in RAM.
INFO 2026-06-08 09:49:16 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr9:70,282,580
INFO 2026-06-08 09:49:16 MarkDuplicates Tracking 969412 as yet unmatched pairs. 60537 records in RAM.
INFO 2026-06-08 09:49:19 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 2s. Last read position: chr9:76,708,422
INFO 2026-06-08 09:49:19 MarkDuplicates Tracking 972805 as yet unmatched pairs. 63917 records in RAM.
INFO 2026-06-08 09:49:21 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 2s. Last read position: chr9:83,707,550
INFO 2026-06-08 09:49:21 MarkDuplicates Tracking 964653 as yet unmatched pairs. 55747 records in RAM.
INFO 2026-06-08 09:49:23 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 2s. Last read position: chr9:87,974,005
INFO 2026-06-08 09:49:23 MarkDuplicates Tracking 960251 as yet unmatched pairs. 51342 records in RAM.
INFO 2026-06-08 09:49:25 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 2s. Last read position: chr9:93,543,410
INFO 2026-06-08 09:49:25 MarkDuplicates Tracking 958549 as yet unmatched pairs. 49619 records in RAM.
INFO 2026-06-08 09:49:27 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 2s. Last read position: chr9:98,778,350
INFO 2026-06-08 09:49:27 MarkDuplicates Tracking 954862 as yet unmatched pairs. 45910 records in RAM.
INFO 2026-06-08 09:49:30 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 2s. Last read position: chr9:99,069,694
INFO 2026-06-08 09:49:30 MarkDuplicates Tracking 956342 as yet unmatched pairs. 47388 records in RAM.
INFO 2026-06-08 09:49:32 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 2s. Last read position: chr9:109,119,452
INFO 2026-06-08 09:49:32 MarkDuplicates Tracking 949124 as yet unmatched pairs. 40162 records in RAM.
INFO 2026-06-08 09:49:34 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 2s. Last read position: chr9:113,410,249
INFO 2026-06-08 09:49:34 MarkDuplicates Tracking 945932 as yet unmatched pairs. 36968 records in RAM.
INFO 2026-06-08 09:49:36 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 2s. Last read position: chr9:115,063,983
INFO 2026-06-08 09:49:36 MarkDuplicates Tracking 945128 as yet unmatched pairs. 36159 records in RAM.
INFO 2026-06-08 09:49:39 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 2s. Last read position: chr9:120,467,873
INFO 2026-06-08 09:49:39 MarkDuplicates Tracking 940594 as yet unmatched pairs. 31611 records in RAM.
INFO 2026-06-08 09:49:41 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 2s. Last read position: chr9:123,080,694
INFO 2026-06-08 09:49:41 MarkDuplicates Tracking 937714 as yet unmatched pairs. 28723 records in RAM.
INFO 2026-06-08 09:49:43 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 2s. Last read position: chr9:127,447,892
INFO 2026-06-08 09:49:43 MarkDuplicates Tracking 937325 as yet unmatched pairs. 28318 records in RAM.
INFO 2026-06-08 09:49:45 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 2s. Last read position: chr9:128,309,824
INFO 2026-06-08 09:49:45 MarkDuplicates Tracking 931800 as yet unmatched pairs. 22784 records in RAM.
INFO 2026-06-08 09:49:47 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 2s. Last read position: chr9:128,907,289
INFO 2026-06-08 09:49:47 MarkDuplicates Tracking 929112 as yet unmatched pairs. 20085 records in RAM.
INFO 2026-06-08 09:49:49 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr9:130,862,930
INFO 2026-06-08 09:49:49 MarkDuplicates Tracking 927078 as yet unmatched pairs. 18031 records in RAM.
INFO 2026-06-08 09:49:51 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 2s. Last read position: chr9:132,271,744
INFO 2026-06-08 09:49:51 MarkDuplicates Tracking 922946 as yet unmatched pairs. 13887 records in RAM.
INFO 2026-06-08 09:49:53 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr9:134,436,581
INFO 2026-06-08 09:49:53 MarkDuplicates Tracking 919913 as yet unmatched pairs. 10847 records in RAM.
INFO 2026-06-08 09:49:55 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 2s. Last read position: chr9:136,355,771
INFO 2026-06-08 09:49:55 MarkDuplicates Tracking 916884 as yet unmatched pairs. 7813 records in RAM.
INFO 2026-06-08 09:49:57 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr9:136,942,060
INFO 2026-06-08 09:49:57 MarkDuplicates Tracking 914119 as yet unmatched pairs. 5027 records in RAM.
INFO 2026-06-08 09:49:59 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr9:137,582,515
INFO 2026-06-08 09:49:59 MarkDuplicates Tracking 909854 as yet unmatched pairs. 752 records in RAM.
INFO 2026-06-08 09:50:01 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 2s. Last read position: chr10:5,757,645
INFO 2026-06-08 09:50:01 MarkDuplicates Tracking 906905 as yet unmatched pairs. 57283 records in RAM.
INFO 2026-06-08 09:50:02 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr10:15,718,773
INFO 2026-06-08 09:50:02 MarkDuplicates Tracking 904788 as yet unmatched pairs. 55158 records in RAM.
INFO 2026-06-08 09:50:04 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr10:23,104,188
INFO 2026-06-08 09:50:04 MarkDuplicates Tracking 901777 as yet unmatched pairs. 52131 records in RAM.
INFO 2026-06-08 09:50:06 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr10:29,550,680
INFO 2026-06-08 09:50:06 MarkDuplicates Tracking 900313 as yet unmatched pairs. 50653 records in RAM.
INFO 2026-06-08 09:50:08 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr10:32,055,883
INFO 2026-06-08 09:50:08 MarkDuplicates Tracking 898787 as yet unmatched pairs. 49125 records in RAM.
INFO 2026-06-08 09:50:09 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr10:35,357,081
INFO 2026-06-08 09:50:09 MarkDuplicates Tracking 894893 as yet unmatched pairs. 45226 records in RAM.
INFO 2026-06-08 09:50:12 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 2s. Last read position: chr10:46,358,417
INFO 2026-06-08 09:50:12 MarkDuplicates Tracking 891330 as yet unmatched pairs. 41662 records in RAM.
INFO 2026-06-08 09:50:14 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 2s. Last read position: chr10:59,906,284
INFO 2026-06-08 09:50:14 MarkDuplicates Tracking 891195 as yet unmatched pairs. 41511 records in RAM.
INFO 2026-06-08 09:50:16 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 2s. Last read position: chr10:69,888,317
INFO 2026-06-08 09:50:16 MarkDuplicates Tracking 886336 as yet unmatched pairs. 36645 records in RAM.
INFO 2026-06-08 09:50:18 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr10:73,767,951
INFO 2026-06-08 09:50:18 MarkDuplicates Tracking 884107 as yet unmatched pairs. 34405 records in RAM.
INFO 2026-06-08 09:50:19 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr10:75,399,164
INFO 2026-06-08 09:50:19 MarkDuplicates Tracking 881407 as yet unmatched pairs. 31694 records in RAM.
INFO 2026-06-08 09:50:21 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr10:78,035,674
INFO 2026-06-08 09:50:21 MarkDuplicates Tracking 889278 as yet unmatched pairs. 39561 records in RAM.
INFO 2026-06-08 09:50:23 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr10:86,890,071
INFO 2026-06-08 09:50:23 MarkDuplicates Tracking 875669 as yet unmatched pairs. 25939 records in RAM.
INFO 2026-06-08 09:50:25 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr10:88,943,870
INFO 2026-06-08 09:50:25 MarkDuplicates Tracking 876447 as yet unmatched pairs. 26712 records in RAM.
INFO 2026-06-08 09:50:26 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr10:93,402,232
INFO 2026-06-08 09:50:26 MarkDuplicates Tracking 871115 as yet unmatched pairs. 21380 records in RAM.
INFO 2026-06-08 09:50:28 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr10:97,430,469
INFO 2026-06-08 09:50:28 MarkDuplicates Tracking 869046 as yet unmatched pairs. 19298 records in RAM.
INFO 2026-06-08 09:50:29 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr10:101,005,683
INFO 2026-06-08 09:50:29 MarkDuplicates Tracking 865604 as yet unmatched pairs. 15847 records in RAM.
INFO 2026-06-08 09:50:32 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 2s. Last read position: chr10:102,657,170
INFO 2026-06-08 09:50:32 MarkDuplicates Tracking 862886 as yet unmatched pairs. 13119 records in RAM.
INFO 2026-06-08 09:50:34 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 2s. Last read position: chr10:110,890,658
INFO 2026-06-08 09:50:34 MarkDuplicates Tracking 859838 as yet unmatched pairs. 10061 records in RAM.
INFO 2026-06-08 09:50:36 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 2s. Last read position: chr10:119,576,640
INFO 2026-06-08 09:50:36 MarkDuplicates Tracking 856494 as yet unmatched pairs. 6705 records in RAM.
INFO 2026-06-08 09:50:38 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 2s. Last read position: chr10:124,044,850
INFO 2026-06-08 09:50:38 MarkDuplicates Tracking 853463 as yet unmatched pairs. 3668 records in RAM.
INFO 2026-06-08 09:50:40 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr10:133,288,149
INFO 2026-06-08 09:50:40 MarkDuplicates Tracking 851193 as yet unmatched pairs. 1381 records in RAM.
INFO 2026-06-08 09:50:42 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 2s. Last read position: chr11:489,296
INFO 2026-06-08 09:50:42 MarkDuplicates Tracking 847948 as yet unmatched pairs. 113904 records in RAM.
INFO 2026-06-08 09:50:44 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:985,500
INFO 2026-06-08 09:50:44 MarkDuplicates Tracking 844771 as yet unmatched pairs. 110725 records in RAM.
INFO 2026-06-08 09:50:46 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:3,227,760
INFO 2026-06-08 09:50:46 MarkDuplicates Tracking 840717 as yet unmatched pairs. 106665 records in RAM.
INFO 2026-06-08 09:50:48 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:6,604,318
INFO 2026-06-08 09:50:48 MarkDuplicates Tracking 841271 as yet unmatched pairs. 107208 records in RAM.
INFO 2026-06-08 09:50:49 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:6,632,600
INFO 2026-06-08 09:50:49 MarkDuplicates Tracking 836081 as yet unmatched pairs. 102017 records in RAM.
INFO 2026-06-08 09:50:51 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:9,139,701
INFO 2026-06-08 09:50:51 MarkDuplicates Tracking 832997 as yet unmatched pairs. 98914 records in RAM.
INFO 2026-06-08 09:50:53 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:10,800,146
INFO 2026-06-08 09:50:53 MarkDuplicates Tracking 833038 as yet unmatched pairs. 98947 records in RAM.
INFO 2026-06-08 09:50:54 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:13,714,570
INFO 2026-06-08 09:50:54 MarkDuplicates Tracking 826884 as yet unmatched pairs. 92784 records in RAM.
INFO 2026-06-08 09:50:56 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:20,082,591
INFO 2026-06-08 09:50:56 MarkDuplicates Tracking 824132 as yet unmatched pairs. 90020 records in RAM.
INFO 2026-06-08 09:50:57 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr11:33,747,143
INFO 2026-06-08 09:50:57 MarkDuplicates Tracking 820867 as yet unmatched pairs. 86748 records in RAM.
INFO 2026-06-08 09:50:59 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr11:46,428,895
INFO 2026-06-08 09:50:59 MarkDuplicates Tracking 817985 as yet unmatched pairs. 83837 records in RAM.
INFO 2026-06-08 09:51:01 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:47,487,172
INFO 2026-06-08 09:51:01 MarkDuplicates Tracking 815160 as yet unmatched pairs. 81010 records in RAM.
INFO 2026-06-08 09:51:03 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 2s. Last read position: chr11:57,745,578
INFO 2026-06-08 09:51:03 MarkDuplicates Tracking 812476 as yet unmatched pairs. 78319 records in RAM.
INFO 2026-06-08 09:51:05 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 2s. Last read position: chr11:61,316,500
INFO 2026-06-08 09:51:05 MarkDuplicates Tracking 810067 as yet unmatched pairs. 75906 records in RAM.
INFO 2026-06-08 09:51:08 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 2s. Last read position: chr11:62,517,462
INFO 2026-06-08 09:51:08 MarkDuplicates Tracking 807751 as yet unmatched pairs. 73589 records in RAM.
INFO 2026-06-08 09:51:09 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr11:62,527,862
INFO 2026-06-08 09:51:09 MarkDuplicates Tracking 805857 as yet unmatched pairs. 71694 records in RAM.
INFO 2026-06-08 09:51:11 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 2s. Last read position: chr11:62,600,674
INFO 2026-06-08 09:51:11 MarkDuplicates Tracking 801655 as yet unmatched pairs. 67487 records in RAM.
INFO 2026-06-08 09:51:14 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 2s. Last read position: chr11:63,633,053
INFO 2026-06-08 09:51:14 MarkDuplicates Tracking 799123 as yet unmatched pairs. 64950 records in RAM.
INFO 2026-06-08 09:51:16 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr11:64,288,074
INFO 2026-06-08 09:51:16 MarkDuplicates Tracking 796186 as yet unmatched pairs. 62010 records in RAM.
INFO 2026-06-08 09:51:18 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 2s. Last read position: chr11:65,121,580
INFO 2026-06-08 09:51:18 MarkDuplicates Tracking 798972 as yet unmatched pairs. 64788 records in RAM.
INFO 2026-06-08 09:51:21 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 2s. Last read position: chr11:65,582,495
INFO 2026-06-08 09:51:21 MarkDuplicates Tracking 789274 as yet unmatched pairs. 55033 records in RAM.
INFO 2026-06-08 09:51:23 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 2s. Last read position: chr11:65,866,983
INFO 2026-06-08 09:51:23 MarkDuplicates Tracking 786489 as yet unmatched pairs. 52240 records in RAM.
INFO 2026-06-08 09:51:25 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:66,521,291
INFO 2026-06-08 09:51:25 MarkDuplicates Tracking 782199 as yet unmatched pairs. 47950 records in RAM.
INFO 2026-06-08 09:51:26 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:67,440,118
INFO 2026-06-08 09:51:26 MarkDuplicates Tracking 779036 as yet unmatched pairs. 44782 records in RAM.
INFO 2026-06-08 09:51:28 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr11:69,005,827
INFO 2026-06-08 09:51:28 MarkDuplicates Tracking 776625 as yet unmatched pairs. 42367 records in RAM.
INFO 2026-06-08 09:51:30 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr11:70,435,519
INFO 2026-06-08 09:51:30 MarkDuplicates Tracking 775206 as yet unmatched pairs. 40929 records in RAM.
INFO 2026-06-08 09:51:31 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr11:72,701,653
INFO 2026-06-08 09:51:31 MarkDuplicates Tracking 769823 as yet unmatched pairs. 35546 records in RAM.
INFO 2026-06-08 09:51:33 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr11:74,835,588
INFO 2026-06-08 09:51:33 MarkDuplicates Tracking 767067 as yet unmatched pairs. 32782 records in RAM.
INFO 2026-06-08 09:51:34 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr11:78,069,937
INFO 2026-06-08 09:51:34 MarkDuplicates Tracking 765263 as yet unmatched pairs. 30970 records in RAM.
INFO 2026-06-08 09:51:36 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr11:90,283,182
INFO 2026-06-08 09:51:36 MarkDuplicates Tracking 760998 as yet unmatched pairs. 26683 records in RAM.
INFO 2026-06-08 09:51:38 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr11:102,110,871
INFO 2026-06-08 09:51:38 MarkDuplicates Tracking 773163 as yet unmatched pairs. 38838 records in RAM.
INFO 2026-06-08 09:51:39 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr11:102,229,863
INFO 2026-06-08 09:51:39 MarkDuplicates Tracking 760939 as yet unmatched pairs. 26608 records in RAM.
INFO 2026-06-08 09:51:41 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr11:111,908,798
INFO 2026-06-08 09:51:41 MarkDuplicates Tracking 764390 as yet unmatched pairs. 30052 records in RAM.
INFO 2026-06-08 09:51:42 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr11:114,251,483
INFO 2026-06-08 09:51:42 MarkDuplicates Tracking 752300 as yet unmatched pairs. 17949 records in RAM.
INFO 2026-06-08 09:51:44 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr11:117,204,283
INFO 2026-06-08 09:51:44 MarkDuplicates Tracking 753713 as yet unmatched pairs. 19358 records in RAM.
INFO 2026-06-08 09:51:46 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr11:118,583,829
INFO 2026-06-08 09:51:46 MarkDuplicates Tracking 745708 as yet unmatched pairs. 11336 records in RAM.
INFO 2026-06-08 09:51:47 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr11:119,055,274
INFO 2026-06-08 09:51:47 MarkDuplicates Tracking 743221 as yet unmatched pairs. 8846 records in RAM.
INFO 2026-06-08 09:51:49 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr11:123,059,124
INFO 2026-06-08 09:51:49 MarkDuplicates Tracking 745648 as yet unmatched pairs. 11261 records in RAM.
INFO 2026-06-08 09:51:50 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr11:126,292,987
INFO 2026-06-08 09:51:50 MarkDuplicates Tracking 737044 as yet unmatched pairs. 2640 records in RAM.
INFO 2026-06-08 09:51:53 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 2s. Last read position: chr12:548,031
INFO 2026-06-08 09:51:53 MarkDuplicates Tracking 734252 as yet unmatched pairs. 99227 records in RAM.
INFO 2026-06-08 09:51:54 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:4,274,091
INFO 2026-06-08 09:51:54 MarkDuplicates Tracking 733775 as yet unmatched pairs. 98718 records in RAM.
INFO 2026-06-08 09:51:57 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 2s. Last read position: chr12:6,587,863
INFO 2026-06-08 09:51:57 MarkDuplicates Tracking 729109 as yet unmatched pairs. 94039 records in RAM.
INFO 2026-06-08 09:51:59 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 2s. Last read position: chr12:6,936,027
INFO 2026-06-08 09:51:59 MarkDuplicates Tracking 725811 as yet unmatched pairs. 90741 records in RAM.
INFO 2026-06-08 09:52:01 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:7,190,256
INFO 2026-06-08 09:52:01 MarkDuplicates Tracking 723059 as yet unmatched pairs. 87979 records in RAM.
INFO 2026-06-08 09:52:03 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 2s. Last read position: chr12:9,072,768
INFO 2026-06-08 09:52:03 MarkDuplicates Tracking 738953 as yet unmatched pairs. 103866 records in RAM.
INFO 2026-06-08 09:52:05 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 2s. Last read position: chr12:9,090,453
INFO 2026-06-08 09:52:05 MarkDuplicates Tracking 731435 as yet unmatched pairs. 96345 records in RAM.
INFO 2026-06-08 09:52:08 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 2s. Last read position: chr12:9,109,388
INFO 2026-06-08 09:52:08 MarkDuplicates Tracking 730010 as yet unmatched pairs. 94915 records in RAM.
INFO 2026-06-08 09:52:10 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 2s. Last read position: chr12:11,393,085
INFO 2026-06-08 09:52:10 MarkDuplicates Tracking 712603 as yet unmatched pairs. 77503 records in RAM.
INFO 2026-06-08 09:52:12 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 2s. Last read position: chr12:14,947,910
INFO 2026-06-08 09:52:12 MarkDuplicates Tracking 711094 as yet unmatched pairs. 75990 records in RAM.
INFO 2026-06-08 09:52:14 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 2s. Last read position: chr12:26,230,862
INFO 2026-06-08 09:52:14 MarkDuplicates Tracking 708049 as yet unmatched pairs. 72938 records in RAM.
INFO 2026-06-08 09:52:17 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 2s. Last read position: chr12:39,340,907
INFO 2026-06-08 09:52:17 MarkDuplicates Tracking 704729 as yet unmatched pairs. 69598 records in RAM.
INFO 2026-06-08 09:52:19 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 2s. Last read position: chr12:48,823,425
INFO 2026-06-08 09:52:19 MarkDuplicates Tracking 702644 as yet unmatched pairs. 67500 records in RAM.
INFO 2026-06-08 09:52:21 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 2s. Last read position: chr12:49,185,547
INFO 2026-06-08 09:52:21 MarkDuplicates Tracking 703102 as yet unmatched pairs. 67958 records in RAM.
INFO 2026-06-08 09:52:23 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 2s. Last read position: chr12:51,241,043
INFO 2026-06-08 09:52:23 MarkDuplicates Tracking 699367 as yet unmatched pairs. 64223 records in RAM.
INFO 2026-06-08 09:52:25 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 2s. Last read position: chr12:53,467,257
INFO 2026-06-08 09:52:25 MarkDuplicates Tracking 698072 as yet unmatched pairs. 62926 records in RAM.
INFO 2026-06-08 09:52:27 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 2s. Last read position: chr12:55,693,193
INFO 2026-06-08 09:52:27 MarkDuplicates Tracking 692390 as yet unmatched pairs. 57236 records in RAM.
INFO 2026-06-08 09:52:29 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 2s. Last read position: chr12:56,158,686
INFO 2026-06-08 09:52:29 MarkDuplicates Tracking 696989 as yet unmatched pairs. 61834 records in RAM.
INFO 2026-06-08 09:52:31 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr12:56,604,788
INFO 2026-06-08 09:52:31 MarkDuplicates Tracking 686513 as yet unmatched pairs. 51357 records in RAM.
INFO 2026-06-08 09:52:33 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr12:57,096,583
INFO 2026-06-08 09:52:33 MarkDuplicates Tracking 685956 as yet unmatched pairs. 50797 records in RAM.
INFO 2026-06-08 09:52:34 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr12:57,179,800
INFO 2026-06-08 09:52:34 MarkDuplicates Tracking 681579 as yet unmatched pairs. 46417 records in RAM.
INFO 2026-06-08 09:52:36 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr12:57,488,181
INFO 2026-06-08 09:52:36 MarkDuplicates Tracking 679379 as yet unmatched pairs. 44214 records in RAM.
INFO 2026-06-08 09:52:38 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr12:61,867,329
INFO 2026-06-08 09:52:38 MarkDuplicates Tracking 675148 as yet unmatched pairs. 39982 records in RAM.
INFO 2026-06-08 09:52:40 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr12:68,654,157
INFO 2026-06-08 09:52:40 MarkDuplicates Tracking 673042 as yet unmatched pairs. 37866 records in RAM.
INFO 2026-06-08 09:52:41 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr12:76,055,019
INFO 2026-06-08 09:52:41 MarkDuplicates Tracking 679685 as yet unmatched pairs. 44505 records in RAM.
INFO 2026-06-08 09:52:43 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr12:89,616,746
INFO 2026-06-08 09:52:43 MarkDuplicates Tracking 668167 as yet unmatched pairs. 32982 records in RAM.
INFO 2026-06-08 09:52:45 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr12:98,593,995
INFO 2026-06-08 09:52:45 MarkDuplicates Tracking 667364 as yet unmatched pairs. 32176 records in RAM.
INFO 2026-06-08 09:52:47 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr12:103,946,807
INFO 2026-06-08 09:52:47 MarkDuplicates Tracking 664823 as yet unmatched pairs. 29624 records in RAM.
INFO 2026-06-08 09:52:49 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 2s. Last read position: chr12:108,291,850
INFO 2026-06-08 09:52:49 MarkDuplicates Tracking 661065 as yet unmatched pairs. 25856 records in RAM.
INFO 2026-06-08 09:52:51 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 2s. Last read position: chr12:110,339,520
INFO 2026-06-08 09:52:51 MarkDuplicates Tracking 660447 as yet unmatched pairs. 25236 records in RAM.
INFO 2026-06-08 09:52:53 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr12:112,217,150
INFO 2026-06-08 09:52:53 MarkDuplicates Tracking 654749 as yet unmatched pairs. 19510 records in RAM.
INFO 2026-06-08 09:52:55 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr12:114,674,574
INFO 2026-06-08 09:52:55 MarkDuplicates Tracking 651757 as yet unmatched pairs. 16517 records in RAM.
INFO 2026-06-08 09:52:56 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr12:120,197,347
INFO 2026-06-08 09:52:56 MarkDuplicates Tracking 653903 as yet unmatched pairs. 18652 records in RAM.
INFO 2026-06-08 09:52:58 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr12:122,130,062
INFO 2026-06-08 09:52:58 MarkDuplicates Tracking 646963 as yet unmatched pairs. 11705 records in RAM.
INFO 2026-06-08 09:52:59 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr12:123,608,827
INFO 2026-06-08 09:52:59 MarkDuplicates Tracking 642956 as yet unmatched pairs. 7692 records in RAM.
INFO 2026-06-08 09:53:02 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 2s. Last read position: chr12:124,913,319
INFO 2026-06-08 09:53:02 MarkDuplicates Tracking 640539 as yet unmatched pairs. 5274 records in RAM.
INFO 2026-06-08 09:53:04 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 2s. Last read position: chr12:132,773,257
INFO 2026-06-08 09:53:04 MarkDuplicates Tracking 638296 as yet unmatched pairs. 3029 records in RAM.
INFO 2026-06-08 09:53:05 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr13:23,332,625
INFO 2026-06-08 09:53:05 MarkDuplicates Tracking 634300 as yet unmatched pairs. 26571 records in RAM.
INFO 2026-06-08 09:53:08 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 2s. Last read position: chr13:32,147,290
INFO 2026-06-08 09:53:08 MarkDuplicates Tracking 631501 as yet unmatched pairs. 23760 records in RAM.
INFO 2026-06-08 09:53:10 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 2s. Last read position: chr13:40,560,305
INFO 2026-06-08 09:53:10 MarkDuplicates Tracking 636543 as yet unmatched pairs. 28788 records in RAM.
INFO 2026-06-08 09:53:12 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 2s. Last read position: chr13:45,338,733
INFO 2026-06-08 09:53:12 MarkDuplicates Tracking 632539 as yet unmatched pairs. 24784 records in RAM.
INFO 2026-06-08 09:53:14 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 2s. Last read position: chr13:61,411,448
INFO 2026-06-08 09:53:14 MarkDuplicates Tracking 623864 as yet unmatched pairs. 16107 records in RAM.
INFO 2026-06-08 09:53:17 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 2s. Last read position: chr13:97,976,734
INFO 2026-06-08 09:53:17 MarkDuplicates Tracking 621518 as yet unmatched pairs. 13742 records in RAM.
INFO 2026-06-08 09:53:19 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 2s. Last read position: chr13:110,161,229
INFO 2026-06-08 09:53:19 MarkDuplicates Tracking 619928 as yet unmatched pairs. 12143 records in RAM.
INFO 2026-06-08 09:53:21 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 2s. Last read position: chr13:110,424,854
INFO 2026-06-08 09:53:21 MarkDuplicates Tracking 617234 as yet unmatched pairs. 9446 records in RAM.
INFO 2026-06-08 09:53:23 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 2s. Last read position: chr13:110,506,376
INFO 2026-06-08 09:53:23 MarkDuplicates Tracking 617323 as yet unmatched pairs. 9535 records in RAM.
INFO 2026-06-08 09:53:26 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 2s. Last read position: chr14:20,345,061
INFO 2026-06-08 09:53:26 MarkDuplicates Tracking 607804 as yet unmatched pairs. 38124 records in RAM.
INFO 2026-06-08 09:53:28 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 2s. Last read position: chr14:22,843,742
INFO 2026-06-08 09:53:28 MarkDuplicates Tracking 606588 as yet unmatched pairs. 36904 records in RAM.
INFO 2026-06-08 09:53:30 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr14:24,163,382
INFO 2026-06-08 09:53:30 MarkDuplicates Tracking 603171 as yet unmatched pairs. 33485 records in RAM.
INFO 2026-06-08 09:53:31 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr14:31,173,743
INFO 2026-06-08 09:53:31 MarkDuplicates Tracking 599525 as yet unmatched pairs. 29830 records in RAM.
INFO 2026-06-08 09:53:33 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr14:49,779,635
INFO 2026-06-08 09:53:33 MarkDuplicates Tracking 597203 as yet unmatched pairs. 27487 records in RAM.
INFO 2026-06-08 09:53:35 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr14:55,619,309
INFO 2026-06-08 09:53:35 MarkDuplicates Tracking 594375 as yet unmatched pairs. 24642 records in RAM.
INFO 2026-06-08 09:53:36 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr14:66,508,350
INFO 2026-06-08 09:53:36 MarkDuplicates Tracking 591528 as yet unmatched pairs. 21783 records in RAM.
INFO 2026-06-08 09:53:38 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr14:69,885,873
INFO 2026-06-08 09:53:38 MarkDuplicates Tracking 588990 as yet unmatched pairs. 19238 records in RAM.
INFO 2026-06-08 09:53:39 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr14:74,586,071
INFO 2026-06-08 09:53:39 MarkDuplicates Tracking 586629 as yet unmatched pairs. 16869 records in RAM.
INFO 2026-06-08 09:53:41 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr14:89,984,531
INFO 2026-06-08 09:53:41 MarkDuplicates Tracking 583153 as yet unmatched pairs. 13387 records in RAM.
INFO 2026-06-08 09:53:43 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr14:94,062,526
INFO 2026-06-08 09:53:43 MarkDuplicates Tracking 581823 as yet unmatched pairs. 12050 records in RAM.
INFO 2026-06-08 09:53:44 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr14:102,020,036
INFO 2026-06-08 09:53:44 MarkDuplicates Tracking 578135 as yet unmatched pairs. 8361 records in RAM.
INFO 2026-06-08 09:53:46 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr14:103,701,167
INFO 2026-06-08 09:53:46 MarkDuplicates Tracking 575493 as yet unmatched pairs. 5712 records in RAM.
INFO 2026-06-08 09:53:48 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr14:104,948,114
INFO 2026-06-08 09:53:48 MarkDuplicates Tracking 573911 as yet unmatched pairs. 4124 records in RAM.
INFO 2026-06-08 09:53:49 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr15:22,009,999
INFO 2026-06-08 09:53:49 MarkDuplicates Tracking 569738 as yet unmatched pairs. 57896 records in RAM.
INFO 2026-06-08 09:53:52 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 2s. Last read position: chr15:29,105,477
INFO 2026-06-08 09:53:52 MarkDuplicates Tracking 566944 as yet unmatched pairs. 55096 records in RAM.
INFO 2026-06-08 09:53:53 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr15:32,731,523
INFO 2026-06-08 09:53:53 MarkDuplicates Tracking 576739 as yet unmatched pairs. 64889 records in RAM.
INFO 2026-06-08 09:53:55 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 2s. Last read position: chr15:32,733,223
INFO 2026-06-08 09:53:55 MarkDuplicates Tracking 564646 as yet unmatched pairs. 52796 records in RAM.
INFO 2026-06-08 09:53:57 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 2s. Last read position: chr15:37,098,079
INFO 2026-06-08 09:53:57 MarkDuplicates Tracking 561378 as yet unmatched pairs. 49515 records in RAM.
INFO 2026-06-08 09:54:00 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 2s. Last read position: chr15:39,802,016
INFO 2026-06-08 09:54:00 MarkDuplicates Tracking 557176 as yet unmatched pairs. 45310 records in RAM.
INFO 2026-06-08 09:54:02 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 2s. Last read position: chr15:42,166,863
INFO 2026-06-08 09:54:02 MarkDuplicates Tracking 554065 as yet unmatched pairs. 42199 records in RAM.
INFO 2026-06-08 09:54:04 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 2s. Last read position: chr15:43,525,643
INFO 2026-06-08 09:54:04 MarkDuplicates Tracking 552033 as yet unmatched pairs. 40164 records in RAM.
INFO 2026-06-08 09:54:07 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 2s. Last read position: chr15:44,716,346
INFO 2026-06-08 09:54:07 MarkDuplicates Tracking 553115 as yet unmatched pairs. 41243 records in RAM.
INFO 2026-06-08 09:54:09 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 2s. Last read position: chr15:50,748,119
INFO 2026-06-08 09:54:09 MarkDuplicates Tracking 547092 as yet unmatched pairs. 35219 records in RAM.
INFO 2026-06-08 09:54:11 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 2s. Last read position: chr15:57,234,048
INFO 2026-06-08 09:54:11 MarkDuplicates Tracking 547431 as yet unmatched pairs. 35551 records in RAM.
INFO 2026-06-08 09:54:13 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 2s. Last read position: chr15:62,034,971
INFO 2026-06-08 09:54:13 MarkDuplicates Tracking 541344 as yet unmatched pairs. 29462 records in RAM.
INFO 2026-06-08 09:54:16 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 2s. Last read position: chr15:63,649,901
INFO 2026-06-08 09:54:16 MarkDuplicates Tracking 537888 as yet unmatched pairs. 26001 records in RAM.
INFO 2026-06-08 09:54:18 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 2s. Last read position: chr15:66,499,515
INFO 2026-06-08 09:54:18 MarkDuplicates Tracking 538603 as yet unmatched pairs. 26711 records in RAM.
INFO 2026-06-08 09:54:20 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 2s. Last read position: chr15:71,728,560
INFO 2026-06-08 09:54:20 MarkDuplicates Tracking 532546 as yet unmatched pairs. 20645 records in RAM.
INFO 2026-06-08 09:54:22 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 2s. Last read position: chr15:73,998,463
INFO 2026-06-08 09:54:22 MarkDuplicates Tracking 530530 as yet unmatched pairs. 18626 records in RAM.
INFO 2026-06-08 09:54:24 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 2s. Last read position: chr15:75,676,430
INFO 2026-06-08 09:54:24 MarkDuplicates Tracking 526942 as yet unmatched pairs. 15035 records in RAM.
INFO 2026-06-08 09:54:26 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr15:78,894,871
INFO 2026-06-08 09:54:26 MarkDuplicates Tracking 525771 as yet unmatched pairs. 13859 records in RAM.
INFO 2026-06-08 09:54:28 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 2s. Last read position: chr15:85,245,161
INFO 2026-06-08 09:54:28 MarkDuplicates Tracking 520815 as yet unmatched pairs. 8903 records in RAM.
INFO 2026-06-08 09:54:30 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr15:88,856,397
INFO 2026-06-08 09:54:30 MarkDuplicates Tracking 519244 as yet unmatched pairs. 7330 records in RAM.
INFO 2026-06-08 09:54:32 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr15:89,648,359
INFO 2026-06-08 09:54:32 MarkDuplicates Tracking 517453 as yet unmatched pairs. 5537 records in RAM.
INFO 2026-06-08 09:54:33 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr15:96,334,086
INFO 2026-06-08 09:54:33 MarkDuplicates Tracking 517051 as yet unmatched pairs. 5135 records in RAM.
INFO 2026-06-08 09:54:36 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 3s. Last read position: chr16:88,845
INFO 2026-06-08 09:54:36 MarkDuplicates Tracking 511984 as yet unmatched pairs. 77872 records in RAM.
INFO 2026-06-08 09:54:38 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr16:731,576
INFO 2026-06-08 09:54:38 MarkDuplicates Tracking 507858 as yet unmatched pairs. 73746 records in RAM.
INFO 2026-06-08 09:54:40 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr16:1,822,958
INFO 2026-06-08 09:54:40 MarkDuplicates Tracking 504667 as yet unmatched pairs. 70550 records in RAM.
INFO 2026-06-08 09:54:41 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr16:2,110,238
INFO 2026-06-08 09:54:41 MarkDuplicates Tracking 501618 as yet unmatched pairs. 67496 records in RAM.
INFO 2026-06-08 09:54:43 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 2s. Last read position: chr16:2,762,461
INFO 2026-06-08 09:54:43 MarkDuplicates Tracking 497739 as yet unmatched pairs. 63613 records in RAM.
INFO 2026-06-08 09:54:45 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr16:3,404,630
INFO 2026-06-08 09:54:45 MarkDuplicates Tracking 494212 as yet unmatched pairs. 60086 records in RAM.
INFO 2026-06-08 09:54:48 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 2s. Last read position: chr16:4,811,263
INFO 2026-06-08 09:54:48 MarkDuplicates Tracking 491508 as yet unmatched pairs. 57382 records in RAM.
INFO 2026-06-08 09:54:51 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 2s. Last read position: chr16:14,140,661
INFO 2026-06-08 09:54:51 MarkDuplicates Tracking 489404 as yet unmatched pairs. 55271 records in RAM.
INFO 2026-06-08 09:54:53 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 2s. Last read position: chr16:15,022,734
INFO 2026-06-08 09:54:53 MarkDuplicates Tracking 487459 as yet unmatched pairs. 53326 records in RAM.
INFO 2026-06-08 09:54:55 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 2s. Last read position: chr16:15,721,588
INFO 2026-06-08 09:54:55 MarkDuplicates Tracking 487326 as yet unmatched pairs. 53192 records in RAM.
INFO 2026-06-08 09:54:58 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 2s. Last read position: chr16:15,838,113
INFO 2026-06-08 09:54:58 MarkDuplicates Tracking 487357 as yet unmatched pairs. 53223 records in RAM.
INFO 2026-06-08 09:54:59 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr16:16,360,900
INFO 2026-06-08 09:54:59 MarkDuplicates Tracking 481298 as yet unmatched pairs. 47164 records in RAM.
INFO 2026-06-08 09:55:01 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr16:18,394,639
INFO 2026-06-08 09:55:01 MarkDuplicates Tracking 479285 as yet unmatched pairs. 45149 records in RAM.
INFO 2026-06-08 09:55:02 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr16:19,714,257
INFO 2026-06-08 09:55:02 MarkDuplicates Tracking 476780 as yet unmatched pairs. 42643 records in RAM.
INFO 2026-06-08 09:55:04 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr16:21,887,685
INFO 2026-06-08 09:55:04 MarkDuplicates Tracking 476006 as yet unmatched pairs. 41859 records in RAM.
INFO 2026-06-08 09:55:05 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr16:23,474,905
INFO 2026-06-08 09:55:05 MarkDuplicates Tracking 474542 as yet unmatched pairs. 40395 records in RAM.
INFO 2026-06-08 09:55:07 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr16:28,390,875
INFO 2026-06-08 09:55:07 MarkDuplicates Tracking 471928 as yet unmatched pairs. 37778 records in RAM.
INFO 2026-06-08 09:55:08 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr16:29,389,986
INFO 2026-06-08 09:55:08 MarkDuplicates Tracking 469450 as yet unmatched pairs. 35300 records in RAM.
INFO 2026-06-08 09:55:11 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 2s. Last read position: chr16:29,861,240
INFO 2026-06-08 09:55:11 MarkDuplicates Tracking 468908 as yet unmatched pairs. 34756 records in RAM.
INFO 2026-06-08 09:55:13 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr16:30,276,060
INFO 2026-06-08 09:55:13 MarkDuplicates Tracking 464116 as yet unmatched pairs. 29964 records in RAM.
INFO 2026-06-08 09:55:15 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 2s. Last read position: chr16:30,763,260
INFO 2026-06-08 09:55:15 MarkDuplicates Tracking 461896 as yet unmatched pairs. 27741 records in RAM.
INFO 2026-06-08 09:55:17 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 2s. Last read position: chr16:31,191,396
INFO 2026-06-08 09:55:17 MarkDuplicates Tracking 462799 as yet unmatched pairs. 28641 records in RAM.
INFO 2026-06-08 09:55:19 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr16:53,321,581
INFO 2026-06-08 09:55:19 MarkDuplicates Tracking 455617 as yet unmatched pairs. 21456 records in RAM.
INFO 2026-06-08 09:55:20 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr16:55,505,491
INFO 2026-06-08 09:55:20 MarkDuplicates Tracking 454533 as yet unmatched pairs. 20368 records in RAM.
INFO 2026-06-08 09:55:22 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 1s. Last read position: chr16:66,604,782
INFO 2026-06-08 09:55:22 MarkDuplicates Tracking 450249 as yet unmatched pairs. 16070 records in RAM.
INFO 2026-06-08 09:55:24 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr16:68,346,241
INFO 2026-06-08 09:55:24 MarkDuplicates Tracking 446623 as yet unmatched pairs. 12441 records in RAM.
INFO 2026-06-08 09:55:26 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr16:70,973,343
INFO 2026-06-08 09:55:26 MarkDuplicates Tracking 443611 as yet unmatched pairs. 9429 records in RAM.
INFO 2026-06-08 09:55:27 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr16:79,599,051
INFO 2026-06-08 09:55:27 MarkDuplicates Tracking 440893 as yet unmatched pairs. 6709 records in RAM.
INFO 2026-06-08 09:55:29 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 1s. Last read position: chr16:88,437,620
INFO 2026-06-08 09:55:29 MarkDuplicates Tracking 437657 as yet unmatched pairs. 3466 records in RAM.
INFO 2026-06-08 09:55:31 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 2s. Last read position: chr17:519,520
INFO 2026-06-08 09:55:31 MarkDuplicates Tracking 434296 as yet unmatched pairs. 150809 records in RAM.
INFO 2026-06-08 09:55:33 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 1s. Last read position: chr17:1,651,160
INFO 2026-06-08 09:55:33 MarkDuplicates Tracking 432302 as yet unmatched pairs. 148814 records in RAM.
INFO 2026-06-08 09:55:35 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 1s. Last read position: chr17:2,055,229
INFO 2026-06-08 09:55:35 MarkDuplicates Tracking 429016 as yet unmatched pairs. 145528 records in RAM.
INFO 2026-06-08 09:55:37 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 1s. Last read position: chr17:4,671,889
INFO 2026-06-08 09:55:37 MarkDuplicates Tracking 425906 as yet unmatched pairs. 142412 records in RAM.
INFO 2026-06-08 09:55:39 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:52s. Time for last 1,000,000: 1s. Last read position: chr17:5,331,989
INFO 2026-06-08 09:55:39 MarkDuplicates Tracking 422797 as yet unmatched pairs. 139302 records in RAM.
INFO 2026-06-08 09:55:41 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 2s. Last read position: chr17:7,311,958
INFO 2026-06-08 09:55:41 MarkDuplicates Tracking 421982 as yet unmatched pairs. 138486 records in RAM.
INFO 2026-06-08 09:55:43 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 2s. Last read position: chr17:7,557,565
INFO 2026-06-08 09:55:43 MarkDuplicates Tracking 419218 as yet unmatched pairs. 135721 records in RAM.
INFO 2026-06-08 09:55:45 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 2s. Last read position: chr17:7,947,913
INFO 2026-06-08 09:55:45 MarkDuplicates Tracking 413907 as yet unmatched pairs. 130410 records in RAM.
INFO 2026-06-08 09:55:48 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 2s. Last read position: chr17:8,552,067
INFO 2026-06-08 09:55:48 MarkDuplicates Tracking 414830 as yet unmatched pairs. 131333 records in RAM.
INFO 2026-06-08 09:55:50 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 2s. Last read position: chr17:15,716,303
INFO 2026-06-08 09:55:50 MarkDuplicates Tracking 408107 as yet unmatched pairs. 124608 records in RAM.
INFO 2026-06-08 09:55:52 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 2s. Last read position: chr17:17,158,699
INFO 2026-06-08 09:55:52 MarkDuplicates Tracking 409025 as yet unmatched pairs. 125526 records in RAM.
INFO 2026-06-08 09:55:55 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 2s. Last read position: chr17:18,252,503
INFO 2026-06-08 09:55:55 MarkDuplicates Tracking 403000 as yet unmatched pairs. 119498 records in RAM.
INFO 2026-06-08 09:55:57 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 2s. Last read position: chr17:21,004,925
INFO 2026-06-08 09:55:57 MarkDuplicates Tracking 401080 as yet unmatched pairs. 117573 records in RAM.
INFO 2026-06-08 09:57:47 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 109s. Last read position: chr17:28,714,810
INFO 2026-06-08 09:57:47 MarkDuplicates Tracking 398928 as yet unmatched pairs. 115420 records in RAM.
INFO 2026-06-08 09:57:48 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr17:30,427,543
INFO 2026-06-08 09:57:48 MarkDuplicates Tracking 394258 as yet unmatched pairs. 110723 records in RAM.
INFO 2026-06-08 09:57:50 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr17:32,934,307
INFO 2026-06-08 09:57:50 MarkDuplicates Tracking 392620 as yet unmatched pairs. 109085 records in RAM.
INFO 2026-06-08 09:57:52 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr17:37,252,032
INFO 2026-06-08 09:57:52 MarkDuplicates Tracking 389402 as yet unmatched pairs. 105867 records in RAM.
INFO 2026-06-08 09:57:53 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr17:38,850,371
INFO 2026-06-08 09:57:53 MarkDuplicates Tracking 396930 as yet unmatched pairs. 113391 records in RAM.
INFO 2026-06-08 09:57:55 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr17:39,725,367
INFO 2026-06-08 09:57:55 MarkDuplicates Tracking 384472 as yet unmatched pairs. 100932 records in RAM.
INFO 2026-06-08 09:57:56 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr17:41,690,121
INFO 2026-06-08 09:57:56 MarkDuplicates Tracking 383712 as yet unmatched pairs. 100168 records in RAM.
INFO 2026-06-08 09:57:58 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 1s. Last read position: chr17:42,324,741
INFO 2026-06-08 09:57:58 MarkDuplicates Tracking 379512 as yet unmatched pairs. 95968 records in RAM.
INFO 2026-06-08 09:57:59 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr17:42,851,675
INFO 2026-06-08 09:57:59 MarkDuplicates Tracking 374788 as yet unmatched pairs. 91239 records in RAM.
INFO 2026-06-08 09:58:01 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr17:44,091,610
INFO 2026-06-08 09:58:01 MarkDuplicates Tracking 372657 as yet unmatched pairs. 89107 records in RAM.
INFO 2026-06-08 09:58:03 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr17:45,549,268
INFO 2026-06-08 09:58:03 MarkDuplicates Tracking 368721 as yet unmatched pairs. 85163 records in RAM.
INFO 2026-06-08 09:58:04 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr17:48,051,350
INFO 2026-06-08 09:58:04 MarkDuplicates Tracking 369019 as yet unmatched pairs. 85457 records in RAM.
INFO 2026-06-08 09:58:06 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,494
INFO 2026-06-08 09:58:06 MarkDuplicates Tracking 383246 as yet unmatched pairs. 99677 records in RAM.
INFO 2026-06-08 09:58:08 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,802
INFO 2026-06-08 09:58:08 MarkDuplicates Tracking 374486 as yet unmatched pairs. 90917 records in RAM.
INFO 2026-06-08 09:58:10 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,936
INFO 2026-06-08 09:58:10 MarkDuplicates Tracking 421890 as yet unmatched pairs. 138320 records in RAM.
INFO 2026-06-08 09:58:11 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,779
INFO 2026-06-08 09:58:11 MarkDuplicates Tracking 417235 as yet unmatched pairs. 133665 records in RAM.
INFO 2026-06-08 09:58:13 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,507
INFO 2026-06-08 09:58:13 MarkDuplicates Tracking 409574 as yet unmatched pairs. 125997 records in RAM.
INFO 2026-06-08 09:58:15 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,336
INFO 2026-06-08 09:58:15 MarkDuplicates Tracking 430787 as yet unmatched pairs. 147210 records in RAM.
INFO 2026-06-08 09:58:17 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,824
INFO 2026-06-08 09:58:17 MarkDuplicates Tracking 402286 as yet unmatched pairs. 118709 records in RAM.
INFO 2026-06-08 09:58:19 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,993
INFO 2026-06-08 09:58:19 MarkDuplicates Tracking 400231 as yet unmatched pairs. 116646 records in RAM.
INFO 2026-06-08 09:58:21 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,364
INFO 2026-06-08 09:58:21 MarkDuplicates Tracking 394750 as yet unmatched pairs. 111163 records in RAM.
INFO 2026-06-08 09:58:22 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,084
INFO 2026-06-08 09:58:22 MarkDuplicates Tracking 393203 as yet unmatched pairs. 109616 records in RAM.
INFO 2026-06-08 09:58:24 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,947
INFO 2026-06-08 09:58:24 MarkDuplicates Tracking 386926 as yet unmatched pairs. 103339 records in RAM.
INFO 2026-06-08 09:58:26 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,517
INFO 2026-06-08 09:58:26 MarkDuplicates Tracking 400219 as yet unmatched pairs. 116632 records in RAM.
INFO 2026-06-08 09:58:28 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,948
INFO 2026-06-08 09:58:28 MarkDuplicates Tracking 380094 as yet unmatched pairs. 96497 records in RAM.
INFO 2026-06-08 09:58:30 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,555
INFO 2026-06-08 09:58:30 MarkDuplicates Tracking 354976 as yet unmatched pairs. 71379 records in RAM.
INFO 2026-06-08 09:58:31 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,998,571
INFO 2026-06-08 09:58:31 MarkDuplicates Tracking 321689 as yet unmatched pairs. 38092 records in RAM.
INFO 2026-06-08 09:58:33 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr17:59,607,063
INFO 2026-06-08 09:58:33 MarkDuplicates Tracking 317878 as yet unmatched pairs. 34273 records in RAM.
INFO 2026-06-08 09:58:34 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr17:59,682,905
INFO 2026-06-08 09:58:34 MarkDuplicates Tracking 320272 as yet unmatched pairs. 36660 records in RAM.
INFO 2026-06-08 09:58:36 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr17:61,984,843
INFO 2026-06-08 09:58:36 MarkDuplicates Tracking 312397 as yet unmatched pairs. 28782 records in RAM.
INFO 2026-06-08 09:58:38 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr17:64,500,079
INFO 2026-06-08 09:58:38 MarkDuplicates Tracking 309693 as yet unmatched pairs. 26078 records in RAM.
INFO 2026-06-08 09:58:39 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr17:68,515,480
INFO 2026-06-08 09:58:39 MarkDuplicates Tracking 314216 as yet unmatched pairs. 30598 records in RAM.
INFO 2026-06-08 09:58:41 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr17:75,039,025
INFO 2026-06-08 09:58:41 MarkDuplicates Tracking 305338 as yet unmatched pairs. 21714 records in RAM.
INFO 2026-06-08 09:58:42 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr17:76,057,428
INFO 2026-06-08 09:58:42 MarkDuplicates Tracking 300779 as yet unmatched pairs. 17155 records in RAM.
INFO 2026-06-08 09:58:44 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr17:78,675,793
INFO 2026-06-08 09:58:44 MarkDuplicates Tracking 297621 as yet unmatched pairs. 13997 records in RAM.
INFO 2026-06-08 09:58:46 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr17:80,294,771
INFO 2026-06-08 09:58:46 MarkDuplicates Tracking 295168 as yet unmatched pairs. 11543 records in RAM.
INFO 2026-06-08 09:58:47 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr17:81,511,299
INFO 2026-06-08 09:58:47 MarkDuplicates Tracking 294290 as yet unmatched pairs. 10656 records in RAM.
INFO 2026-06-08 09:58:49 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr17:81,869,396
INFO 2026-06-08 09:58:49 MarkDuplicates Tracking 291791 as yet unmatched pairs. 8151 records in RAM.
INFO 2026-06-08 09:58:50 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr17:82,444,373
INFO 2026-06-08 09:58:50 MarkDuplicates Tracking 286353 as yet unmatched pairs. 2712 records in RAM.
INFO 2026-06-08 09:58:52 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr18:6,462,875
INFO 2026-06-08 09:58:52 MarkDuplicates Tracking 282015 as yet unmatched pairs. 22992 records in RAM.
INFO 2026-06-08 09:58:54 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr18:12,310,956
INFO 2026-06-08 09:58:54 MarkDuplicates Tracking 280926 as yet unmatched pairs. 21891 records in RAM.
INFO 2026-06-08 09:58:55 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr18:23,536,804
INFO 2026-06-08 09:58:55 MarkDuplicates Tracking 276500 as yet unmatched pairs. 17463 records in RAM.
INFO 2026-06-08 09:58:57 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr18:28,005,956
INFO 2026-06-08 09:58:57 MarkDuplicates Tracking 274360 as yet unmatched pairs. 15318 records in RAM.
INFO 2026-06-08 09:58:58 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr18:36,818,907
INFO 2026-06-08 09:58:58 MarkDuplicates Tracking 271370 as yet unmatched pairs. 12328 records in RAM.
INFO 2026-06-08 09:59:00 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr18:49,488,512
INFO 2026-06-08 09:59:00 MarkDuplicates Tracking 271193 as yet unmatched pairs. 12143 records in RAM.
INFO 2026-06-08 09:59:01 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr18:57,648,597
INFO 2026-06-08 09:59:01 MarkDuplicates Tracking 268379 as yet unmatched pairs. 9306 records in RAM.
INFO 2026-06-08 09:59:03 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr18:62,963,462
INFO 2026-06-08 09:59:03 MarkDuplicates Tracking 262967 as yet unmatched pairs. 3889 records in RAM.
INFO 2026-06-08 09:59:04 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr18:79,717,589
INFO 2026-06-08 09:59:04 MarkDuplicates Tracking 260514 as yet unmatched pairs. 1435 records in RAM.
INFO 2026-06-08 09:59:07 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 2s. Last read position: chr19:880,055
INFO 2026-06-08 09:59:07 MarkDuplicates Tracking 256415 as yet unmatched pairs. 111117 records in RAM.
INFO 2026-06-08 09:59:09 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr19:1,275,702
INFO 2026-06-08 09:59:09 MarkDuplicates Tracking 253197 as yet unmatched pairs. 107898 records in RAM.
INFO 2026-06-08 09:59:10 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr19:1,979,785
INFO 2026-06-08 09:59:10 MarkDuplicates Tracking 249638 as yet unmatched pairs. 104333 records in RAM.
INFO 2026-06-08 09:59:12 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:3,006,645
INFO 2026-06-08 09:59:12 MarkDuplicates Tracking 246219 as yet unmatched pairs. 100914 records in RAM.
INFO 2026-06-08 09:59:13 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr19:3,961,071
INFO 2026-06-08 09:59:13 MarkDuplicates Tracking 243008 as yet unmatched pairs. 97701 records in RAM.
INFO 2026-06-08 09:59:15 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr19:4,816,343
INFO 2026-06-08 09:59:15 MarkDuplicates Tracking 239151 as yet unmatched pairs. 93841 records in RAM.
INFO 2026-06-08 09:59:17 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr19:6,222,524
INFO 2026-06-08 09:59:17 MarkDuplicates Tracking 236325 as yet unmatched pairs. 91015 records in RAM.
INFO 2026-06-08 09:59:18 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr19:7,520,745
INFO 2026-06-08 09:59:18 MarkDuplicates Tracking 233884 as yet unmatched pairs. 88573 records in RAM.
INFO 2026-06-08 09:59:20 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr19:9,529,161
INFO 2026-06-08 09:59:20 MarkDuplicates Tracking 229434 as yet unmatched pairs. 84123 records in RAM.
INFO 2026-06-08 09:59:21 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr19:10,636,717
INFO 2026-06-08 09:59:21 MarkDuplicates Tracking 227141 as yet unmatched pairs. 81830 records in RAM.
INFO 2026-06-08 09:59:23 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr19:11,193,008
INFO 2026-06-08 09:59:23 MarkDuplicates Tracking 226528 as yet unmatched pairs. 81217 records in RAM.
INFO 2026-06-08 09:59:25 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr19:11,549,655
INFO 2026-06-08 09:59:25 MarkDuplicates Tracking 220386 as yet unmatched pairs. 75073 records in RAM.
INFO 2026-06-08 09:59:26 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr19:12,940,308
INFO 2026-06-08 09:59:26 MarkDuplicates Tracking 218592 as yet unmatched pairs. 73279 records in RAM.
INFO 2026-06-08 09:59:28 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr19:14,088,437
INFO 2026-06-08 09:59:28 MarkDuplicates Tracking 214571 as yet unmatched pairs. 69250 records in RAM.
INFO 2026-06-08 09:59:30 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr19:14,458,200
INFO 2026-06-08 09:59:30 MarkDuplicates Tracking 212082 as yet unmatched pairs. 66761 records in RAM.
INFO 2026-06-08 09:59:31 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr19:15,161,485
INFO 2026-06-08 09:59:31 MarkDuplicates Tracking 209150 as yet unmatched pairs. 63829 records in RAM.
INFO 2026-06-08 09:59:33 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr19:15,267,445
INFO 2026-06-08 09:59:33 MarkDuplicates Tracking 208012 as yet unmatched pairs. 62691 records in RAM.
INFO 2026-06-08 09:59:35 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr19:16,404,659
INFO 2026-06-08 09:59:35 MarkDuplicates Tracking 201819 as yet unmatched pairs. 56496 records in RAM.
INFO 2026-06-08 09:59:36 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr19:17,470,593
INFO 2026-06-08 09:59:36 MarkDuplicates Tracking 198446 as yet unmatched pairs. 53122 records in RAM.
INFO 2026-06-08 09:59:38 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr19:18,431,840
INFO 2026-06-08 09:59:38 MarkDuplicates Tracking 197669 as yet unmatched pairs. 52342 records in RAM.
INFO 2026-06-08 09:59:39 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr19:19,042,746
INFO 2026-06-08 09:59:39 MarkDuplicates Tracking 191489 as yet unmatched pairs. 46153 records in RAM.
INFO 2026-06-08 09:59:41 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr19:33,207,484
INFO 2026-06-08 09:59:41 MarkDuplicates Tracking 188468 as yet unmatched pairs. 43132 records in RAM.
INFO 2026-06-08 09:59:42 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr19:36,017,400
INFO 2026-06-08 09:59:42 MarkDuplicates Tracking 185574 as yet unmatched pairs. 40233 records in RAM.
INFO 2026-06-08 09:59:44 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr19:38,840,325
INFO 2026-06-08 09:59:44 MarkDuplicates Tracking 182304 as yet unmatched pairs. 36962 records in RAM.
INFO 2026-06-08 09:59:45 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr19:40,235,958
INFO 2026-06-08 09:59:45 MarkDuplicates Tracking 180556 as yet unmatched pairs. 35214 records in RAM.
INFO 2026-06-08 09:59:47 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr19:41,903,341
INFO 2026-06-08 09:59:47 MarkDuplicates Tracking 175971 as yet unmatched pairs. 30629 records in RAM.
INFO 2026-06-08 09:59:48 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr19:42,293,941
INFO 2026-06-08 09:59:48 MarkDuplicates Tracking 175403 as yet unmatched pairs. 30058 records in RAM.
INFO 2026-06-08 09:59:50 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr19:45,413,686
INFO 2026-06-08 09:59:50 MarkDuplicates Tracking 169984 as yet unmatched pairs. 24632 records in RAM.
INFO 2026-06-08 09:59:51 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr19:46,689,546
INFO 2026-06-08 09:59:51 MarkDuplicates Tracking 165393 as yet unmatched pairs. 20040 records in RAM.
INFO 2026-06-08 09:59:53 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr19:48,615,398
INFO 2026-06-08 09:59:53 MarkDuplicates Tracking 164448 as yet unmatched pairs. 19094 records in RAM.
INFO 2026-06-08 09:59:55 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr19:49,513,345
INFO 2026-06-08 09:59:55 MarkDuplicates Tracking 160017 as yet unmatched pairs. 14663 records in RAM.
INFO 2026-06-08 09:59:56 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr19:50,482,808
INFO 2026-06-08 09:59:56 MarkDuplicates Tracking 155698 as yet unmatched pairs. 10344 records in RAM.
INFO 2026-06-08 09:59:58 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr19:54,458,712
INFO 2026-06-08 09:59:58 MarkDuplicates Tracking 153309 as yet unmatched pairs. 7952 records in RAM.
INFO 2026-06-08 09:59:59 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr19:55,597,586
INFO 2026-06-08 09:59:59 MarkDuplicates Tracking 149345 as yet unmatched pairs. 3988 records in RAM.
INFO 2026-06-08 10:00:01 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr19:58,393,470
INFO 2026-06-08 10:00:01 MarkDuplicates Tracking 147989 as yet unmatched pairs. 2629 records in RAM.
INFO 2026-06-08 10:00:02 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr20:2,988,462
INFO 2026-06-08 10:00:02 MarkDuplicates Tracking 143739 as yet unmatched pairs. 36559 records in RAM.
INFO 2026-06-08 10:00:04 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr20:17,600,847
INFO 2026-06-08 10:00:04 MarkDuplicates Tracking 143295 as yet unmatched pairs. 36113 records in RAM.
INFO 2026-06-08 10:00:05 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr20:31,544,987
INFO 2026-06-08 10:00:05 MarkDuplicates Tracking 139298 as yet unmatched pairs. 32114 records in RAM.
INFO 2026-06-08 10:00:07 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr20:34,516,443
INFO 2026-06-08 10:00:07 MarkDuplicates Tracking 135345 as yet unmatched pairs. 28160 records in RAM.
INFO 2026-06-08 10:00:09 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr20:35,707,152
INFO 2026-06-08 10:00:09 MarkDuplicates Tracking 134076 as yet unmatched pairs. 26891 records in RAM.
INFO 2026-06-08 10:00:10 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr20:36,815,876
INFO 2026-06-08 10:00:10 MarkDuplicates Tracking 129317 as yet unmatched pairs. 22132 records in RAM.
INFO 2026-06-08 10:00:12 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr20:41,165,804
INFO 2026-06-08 10:00:12 MarkDuplicates Tracking 126211 as yet unmatched pairs. 19026 records in RAM.
INFO 2026-06-08 10:00:13 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr20:44,966,560
INFO 2026-06-08 10:00:13 MarkDuplicates Tracking 122731 as yet unmatched pairs. 15546 records in RAM.
INFO 2026-06-08 10:00:15 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr20:47,676,544
INFO 2026-06-08 10:00:15 MarkDuplicates Tracking 120605 as yet unmatched pairs. 13420 records in RAM.
INFO 2026-06-08 10:00:16 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr20:50,893,115
INFO 2026-06-08 10:00:16 MarkDuplicates Tracking 117395 as yet unmatched pairs. 10209 records in RAM.
INFO 2026-06-08 10:00:18 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr20:58,909,949
INFO 2026-06-08 10:00:18 MarkDuplicates Tracking 119349 as yet unmatched pairs. 12159 records in RAM.
INFO 2026-06-08 10:00:19 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr20:62,882,181
INFO 2026-06-08 10:00:19 MarkDuplicates Tracking 110901 as yet unmatched pairs. 3708 records in RAM.
INFO 2026-06-08 10:00:21 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr21:5,026,293
INFO 2026-06-08 10:00:21 MarkDuplicates Tracking 107193 as yet unmatched pairs. 16154 records in RAM.
INFO 2026-06-08 10:00:22 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr21:15,811,187
INFO 2026-06-08 10:00:22 MarkDuplicates Tracking 105578 as yet unmatched pairs. 14538 records in RAM.
INFO 2026-06-08 10:00:24 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr21:33,551,184
INFO 2026-06-08 10:00:24 MarkDuplicates Tracking 103868 as yet unmatched pairs. 12827 records in RAM.
INFO 2026-06-08 10:00:25 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chr21:41,168,321
INFO 2026-06-08 10:00:25 MarkDuplicates Tracking 100382 as yet unmatched pairs. 9339 records in RAM.
INFO 2026-06-08 10:00:27 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr21:45,512,211
INFO 2026-06-08 10:00:27 MarkDuplicates Tracking 99012 as yet unmatched pairs. 7968 records in RAM.
INFO 2026-06-08 10:00:29 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr21:46,116,663
INFO 2026-06-08 10:00:29 MarkDuplicates Tracking 96721 as yet unmatched pairs. 5676 records in RAM.
INFO 2026-06-08 10:00:31 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chr22:17,790,740
INFO 2026-06-08 10:00:31 MarkDuplicates Tracking 91023 as yet unmatched pairs. 28029 records in RAM.
INFO 2026-06-08 10:00:32 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr22:21,549,669
INFO 2026-06-08 10:00:32 MarkDuplicates Tracking 87616 as yet unmatched pairs. 24622 records in RAM.
INFO 2026-06-08 10:00:34 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chr22:29,137,474
INFO 2026-06-08 10:00:34 MarkDuplicates Tracking 84575 as yet unmatched pairs. 21581 records in RAM.
INFO 2026-06-08 10:00:35 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr22:31,259,033
INFO 2026-06-08 10:00:35 MarkDuplicates Tracking 81641 as yet unmatched pairs. 18647 records in RAM.
INFO 2026-06-08 10:00:37 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr22:36,289,243
INFO 2026-06-08 10:00:37 MarkDuplicates Tracking 80219 as yet unmatched pairs. 17225 records in RAM.
INFO 2026-06-08 10:00:38 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr22:37,566,570
INFO 2026-06-08 10:00:38 MarkDuplicates Tracking 76085 as yet unmatched pairs. 13089 records in RAM.
INFO 2026-06-08 10:00:40 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr22:38,866,974
INFO 2026-06-08 10:00:40 MarkDuplicates Tracking 73196 as yet unmatched pairs. 10200 records in RAM.
INFO 2026-06-08 10:00:41 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chr22:41,586,178
INFO 2026-06-08 10:00:41 MarkDuplicates Tracking 69711 as yet unmatched pairs. 6714 records in RAM.
INFO 2026-06-08 10:00:43 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chr22:49,903,935
INFO 2026-06-08 10:00:43 MarkDuplicates Tracking 66951 as yet unmatched pairs. 3954 records in RAM.
INFO 2026-06-08 10:00:45 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr22:50,721,073
INFO 2026-06-08 10:00:45 MarkDuplicates Tracking 64039 as yet unmatched pairs. 1038 records in RAM.
INFO 2026-06-08 10:00:47 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 2s. Last read position: chrX:3,321,286
INFO 2026-06-08 10:00:47 MarkDuplicates Tracking 60328 as yet unmatched pairs. 58052 records in RAM.
INFO 2026-06-08 10:00:48 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chrX:15,815,739
INFO 2026-06-08 10:00:48 MarkDuplicates Tracking 57375 as yet unmatched pairs. 55099 records in RAM.
INFO 2026-06-08 10:00:50 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chrX:32,386,308
INFO 2026-06-08 10:00:50 MarkDuplicates Tracking 54695 as yet unmatched pairs. 52418 records in RAM.
INFO 2026-06-08 10:00:51 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chrX:44,873,693
INFO 2026-06-08 10:00:51 MarkDuplicates Tracking 52136 as yet unmatched pairs. 49859 records in RAM.
INFO 2026-06-08 10:00:53 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chrX:48,577,023
INFO 2026-06-08 10:00:53 MarkDuplicates Tracking 50121 as yet unmatched pairs. 47844 records in RAM.
INFO 2026-06-08 10:00:54 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chrX:51,895,558
INFO 2026-06-08 10:00:54 MarkDuplicates Tracking 46293 as yet unmatched pairs. 44016 records in RAM.
INFO 2026-06-08 10:00:56 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chrX:53,593,401
INFO 2026-06-08 10:00:56 MarkDuplicates Tracking 44413 as yet unmatched pairs. 42136 records in RAM.
INFO 2026-06-08 10:00:58 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chrX:65,737,286
INFO 2026-06-08 10:00:58 MarkDuplicates Tracking 42299 as yet unmatched pairs. 40022 records in RAM.
INFO 2026-06-08 10:00:59 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chrX:71,406,709
INFO 2026-06-08 10:00:59 MarkDuplicates Tracking 37864 as yet unmatched pairs. 35587 records in RAM.
INFO 2026-06-08 10:01:01 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chrX:77,676,252
INFO 2026-06-08 10:01:01 MarkDuplicates Tracking 37540 as yet unmatched pairs. 35263 records in RAM.
INFO 2026-06-08 10:01:02 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chrX:101,489,041
INFO 2026-06-08 10:01:02 MarkDuplicates Tracking 32459 as yet unmatched pairs. 30182 records in RAM.
INFO 2026-06-08 10:01:04 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 1s. Last read position: chrX:106,981,358
INFO 2026-06-08 10:01:04 MarkDuplicates Tracking 30248 as yet unmatched pairs. 27970 records in RAM.
INFO 2026-06-08 10:01:05 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chrX:111,519,064
INFO 2026-06-08 10:01:05 MarkDuplicates Tracking 32105 as yet unmatched pairs. 29827 records in RAM.
INFO 2026-06-08 10:01:07 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chrX:123,394,998
INFO 2026-06-08 10:01:07 MarkDuplicates Tracking 24797 as yet unmatched pairs. 22519 records in RAM.
INFO 2026-06-08 10:01:08 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 1s. Last read position: chrX:136,879,033
INFO 2026-06-08 10:01:08 MarkDuplicates Tracking 22364 as yet unmatched pairs. 20086 records in RAM.
INFO 2026-06-08 10:01:10 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chrX:153,786,413
INFO 2026-06-08 10:01:10 MarkDuplicates Tracking 19576 as yet unmatched pairs. 17296 records in RAM.
INFO 2026-06-08 10:01:11 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 1s. Last read position: chrX:154,349,772
INFO 2026-06-08 10:01:11 MarkDuplicates Tracking 25076 as yet unmatched pairs. 22796 records in RAM.
INFO 2026-06-08 10:01:13 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 1s. Last read position: chrX:154,354,843
INFO 2026-06-08 10:01:13 MarkDuplicates Tracking 18921 as yet unmatched pairs. 16640 records in RAM.
INFO 2026-06-08 10:01:14 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 1s. Last read position: chrX:154,360,528
INFO 2026-06-08 10:01:14 MarkDuplicates Tracking 23237 as yet unmatched pairs. 20956 records in RAM.
INFO 2026-06-08 10:01:16 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chrX:154,366,049
INFO 2026-06-08 10:01:16 MarkDuplicates Tracking 17601 as yet unmatched pairs. 15320 records in RAM.
INFO 2026-06-08 10:01:18 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chrX:154,440,379
INFO 2026-06-08 10:01:18 MarkDuplicates Tracking 4853 as yet unmatched pairs. 2572 records in RAM.
INFO 2026-06-08 10:01:19 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: GL000220.1:151,363
INFO 2026-06-08 10:01:19 MarkDuplicates Tracking 1699 as yet unmatched pairs. 41 records in RAM.
INFO 2026-06-08 10:01:20 MarkDuplicates Read 621952339 records. 0 pairs never matched.
INFO 2026-06-08 10:01:56 MarkDuplicates After buildSortedReadEndLists freeMemory: 58189707344; totalMemory: 83114328064; maxMemory: 127137742848
INFO 2026-06-08 10:01:56 MarkDuplicates Will retain up to 2147483642 duplicate indices before spilling to disk.
INFO 2026-06-08 10:01:58 MarkDuplicates Traversing read pair information and detecting duplicates.
INFO 2026-06-08 10:02:20 OpticalDuplicateFinder Large duplicate set. size = 1045
INFO 2026-06-08 10:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,517
INFO 2026-06-08 10:03:03 OpticalDuplicateFinder Large duplicate set. size = 1092
INFO 2026-06-08 10:03:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,785
INFO 2026-06-08 10:03:04 OpticalDuplicateFinder Large duplicate set. size = 1078
INFO 2026-06-08 10:03:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,764
INFO 2026-06-08 10:03:04 OpticalDuplicateFinder Large duplicate set. size = 1422
INFO 2026-06-08 10:03:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,404
INFO 2026-06-08 10:03:04 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-08 10:03:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,717
INFO 2026-06-08 10:03:11 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 10:03:11 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 10:04:00 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 10:04:06 MarkDuplicates After generateDuplicateIndexes freeMemory: 203979792; totalMemory: 234881024; maxMemory: 127137742848
INFO 2026-06-08 10:04:06 MarkDuplicates Marking 371005593 records as duplicates.
INFO 2026-06-08 10:04:06 MarkDuplicates Found 18860465 optical duplicate clusters.
INFO 2026-06-08 10:04:06 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 10:04:22 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:36,179,666
INFO 2026-06-08 10:04:38 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:32s. Time for last 10,000,000: 15s. Last read position: chr1:119,940,612
INFO 2026-06-08 10:04:55 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:49s. Time for last 10,000,000: 16s. Last read position: chr1:153,687,288
INFO 2026-06-08 10:05:11 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:05s. Time for last 10,000,000: 16s. Last read position: chr1:160,292,565
INFO 2026-06-08 10:05:27 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:21s. Time for last 10,000,000: 16s. Last read position: chr1:201,900,721
INFO 2026-06-08 10:05:43 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:37s. Time for last 10,000,000: 15s. Last read position: chr1:234,609,295
INFO 2026-06-08 10:06:00 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:54s. Time for last 10,000,000: 16s. Last read position: chr2:32,916,264
INFO 2026-06-08 10:06:16 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:10s. Time for last 10,000,000: 16s. Last read position: chr2:74,461,446
INFO 2026-06-08 10:06:32 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:26s. Time for last 10,000,000: 16s. Last read position: chr2:186,590,441
INFO 2026-06-08 10:06:48 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:42s. Time for last 10,000,000: 16s. Last read position: chr2:215,397,180
INFO 2026-06-08 10:07:04 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:58s. Time for last 10,000,000: 15s. Last read position: chr2:223,977,600
INFO 2026-06-08 10:07:21 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:14s. Time for last 10,000,000: 16s. Last read position: chr3:39,074,833
INFO 2026-06-08 10:07:37 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:31s. Time for last 10,000,000: 16s. Last read position: chr3:58,132,876
INFO 2026-06-08 10:07:54 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:48s. Time for last 10,000,000: 16s. Last read position: chr3:159,764,512
INFO 2026-06-08 10:08:10 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:04s. Time for last 10,000,000: 16s. Last read position: chr4:47,576,869
INFO 2026-06-08 10:08:27 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:21s. Time for last 10,000,000: 16s. Last read position: chr4:168,442,309
INFO 2026-06-08 10:08:43 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:37s. Time for last 10,000,000: 16s. Last read position: chr5:71,532,407
INFO 2026-06-08 10:09:00 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:54s. Time for last 10,000,000: 16s. Last read position: chr5:138,467,100
INFO 2026-06-08 10:09:16 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:10s. Time for last 10,000,000: 16s. Last read position: chr5:173,944,967
INFO 2026-06-08 10:09:32 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:26s. Time for last 10,000,000: 16s. Last read position: chr6:31,880,820
INFO 2026-06-08 10:09:49 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:43s. Time for last 10,000,000: 16s. Last read position: chr6:110,442,645
INFO 2026-06-08 10:10:05 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:59s. Time for last 10,000,000: 16s. Last read position: chr6:160,064,824
INFO 2026-06-08 10:10:21 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:15s. Time for last 10,000,000: 16s. Last read position: chr7:44,107,918
INFO 2026-06-08 10:10:38 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:31s. Time for last 10,000,000: 16s. Last read position: chr7:96,694,821
INFO 2026-06-08 10:10:54 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:48s. Time for last 10,000,000: 16s. Last read position: chr7:137,227,840
INFO 2026-06-08 10:11:10 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:04s. Time for last 10,000,000: 16s. Last read position: chr8:33,389,785
INFO 2026-06-08 10:11:27 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:21s. Time for last 10,000,000: 16s. Last read position: chr8:102,232,216
INFO 2026-06-08 10:11:43 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:37s. Time for last 10,000,000: 16s. Last read position: chr9:35,056,978
INFO 2026-06-08 10:11:59 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:53s. Time for last 10,000,000: 16s. Last read position: chr9:109,119,452
INFO 2026-06-08 10:12:16 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:10s. Time for last 10,000,000: 16s. Last read position: chr9:134,436,581
INFO 2026-06-08 10:12:32 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:26s. Time for last 10,000,000: 16s. Last read position: chr10:46,358,417
INFO 2026-06-08 10:12:48 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:42s. Time for last 10,000,000: 16s. Last read position: chr10:101,005,683
INFO 2026-06-08 10:13:04 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:58s. Time for last 10,000,000: 16s. Last read position: chr11:6,632,600
INFO 2026-06-08 10:13:20 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:14s. Time for last 10,000,000: 16s. Last read position: chr11:62,517,462
INFO 2026-06-08 10:13:37 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:31s. Time for last 10,000,000: 16s. Last read position: chr11:69,005,827
INFO 2026-06-08 10:13:53 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:47s. Time for last 10,000,000: 16s. Last read position: chr11:117,204,283
INFO 2026-06-08 10:14:09 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:03s. Time for last 10,000,000: 16s. Last read position: chr12:9,072,768
INFO 2026-06-08 10:14:25 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:19s. Time for last 10,000,000: 16s. Last read position: chr12:53,467,257
INFO 2026-06-08 10:14:41 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:35s. Time for last 10,000,000: 16s. Last read position: chr12:89,616,746
INFO 2026-06-08 10:14:57 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:51s. Time for last 10,000,000: 16s. Last read position: chr12:124,913,319
INFO 2026-06-08 10:15:13 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:07s. Time for last 10,000,000: 15s. Last read position: chr13:110,506,376
INFO 2026-06-08 10:15:30 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:24s. Time for last 10,000,000: 16s. Last read position: chr14:89,984,531
INFO 2026-06-08 10:15:46 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:40s. Time for last 10,000,000: 16s. Last read position: chr15:39,802,016
INFO 2026-06-08 10:16:02 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:56s. Time for last 10,000,000: 16s. Last read position: chr15:73,998,463
INFO 2026-06-08 10:16:18 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:12s. Time for last 10,000,000: 16s. Last read position: chr16:2,110,238
INFO 2026-06-08 10:16:34 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:28s. Time for last 10,000,000: 16s. Last read position: chr16:19,714,257
INFO 2026-06-08 10:16:51 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:45s. Time for last 10,000,000: 17s. Last read position: chr16:55,505,491
INFO 2026-06-08 10:17:08 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:02s. Time for last 10,000,000: 16s. Last read position: chr17:5,331,989
INFO 2026-06-08 10:17:24 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:18s. Time for last 10,000,000: 16s. Last read position: chr17:30,427,543
INFO 2026-06-08 10:17:41 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:35s. Time for last 10,000,000: 16s. Last read position: chr17:48,051,350
INFO 2026-06-08 10:17:58 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:52s. Time for last 10,000,000: 17s. Last read position: chr17:50,195,084
INFO 2026-06-08 10:18:15 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:09s. Time for last 10,000,000: 16s. Last read position: chr17:68,515,480
INFO 2026-06-08 10:18:31 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:25s. Time for last 10,000,000: 16s. Last read position: chr18:23,536,804
INFO 2026-06-08 10:18:47 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:41s. Time for last 10,000,000: 16s. Last read position: chr19:3,006,645
INFO 2026-06-08 10:19:04 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:58s. Time for last 10,000,000: 16s. Last read position: chr19:14,088,437
INFO 2026-06-08 10:19:20 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:14s. Time for last 10,000,000: 16s. Last read position: chr19:38,840,325
INFO 2026-06-08 10:19:36 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:30s. Time for last 10,000,000: 16s. Last read position: chr19:55,597,586
INFO 2026-06-08 10:19:53 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:47s. Time for last 10,000,000: 16s. Last read position: chr20:47,676,544
INFO 2026-06-08 10:20:09 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:03s. Time for last 10,000,000: 16s. Last read position: chr22:17,790,740
INFO 2026-06-08 10:20:25 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:19s. Time for last 10,000,000: 16s. Last read position: chrX:3,321,286
INFO 2026-06-08 10:20:42 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:36s. Time for last 10,000,000: 16s. Last read position: chrX:101,489,041
INFO 2026-06-08 10:20:58 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:52s. Time for last 10,000,000: 16s. Last read position: chrX:154,440,379
INFO 2026-06-08 10:21:08 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 10:21:08 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 10:21:08 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 10:21:08 MarkDuplicates Before output close freeMemory: 203944136; totalMemory: 234881024; maxMemory: 127137742848
INFO 2026-06-08 10:21:08 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 10:21:08 MarkDuplicates After output close freeMemory: 104188672; totalMemory: 134217728; maxMemory: 127137742848
[Mon Jun 08 10:21:08 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 41.42 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory