File Info

Filename
1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2.starfusion.starfusion.fusion_predictions.filter_summary.txt
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/starfusion/1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2.starfusion.starfusion.fusion_predictions.filter_summary.txt
Size
1.4 KB
Workflow Run
dev_rna_exp0016-2cae617
Published
May 16, 2026 10:29 AM

Content

View in new tab 
STAR-FUSION FILTERING SUMMARY
================================================================================

Input file: 1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2.starfusion.starfusion.fusion_predictions.tsv
Blacklist: blacklist_hg38_GRCh38_v2.4.0.tsv.gz
Filter config: starfusion_filter_config.yaml
Output file: 1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2.starfusion.starfusion.fusion_predictions.filter_summary.tsv

Total fusions: 412
Pass (CALL=1): 25 (6.1%)
Fail (CALL=0): 387 (93.9%)

Blacklist Flagging:
  Total blacklisted: 120
  All blacklisted fusions have CALL=0

Failure Reasons:
  Read count too low: 1 < 8: 143
  Excluded SpliceType: INCL_NON_REF_SPLICE: 87
  Blacklisted: 46
  Blacklisted; aih_curated_blacklist score(3): 44
  aih_curated_blacklist score(3): 28
  Excluded annotation pattern: GTEx_recurrent_StarF2019: 7
  Read count too low: 2 < 8: 5
  Excluded annotation pattern: HGNC_GENEFAM: 4
  Read count too low: 7 < 8: 4
  Read count too low: 6 < 8: 4
  Read count too low: 4 < 8: 4
  Does not meet inclusion criteria: 3
  Excluded annotation pattern: DGD_PARALOGS: 3
  aih_curated_blacklist score(6): 1
  aih_curated_blacklist score(5): 1
  Read count too low: 5 < 8: 1
  Read count too low: 3 < 8: 1
  Excluded annotation pattern: Babiceanu_Normal: 1

Breakdown by SpliceType:
  INCL_NON_REF_SPLICE: 0 pass, 218 fail (total: 218)
  ONLY_REF_SPLICE: 25 pass, 169 fail (total: 194)