File Info
- Filename
- 1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2.fusions.csv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/fusionreport/1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2/1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2.fusions.csv
- Size
- 7.9 KB
- Workflow Run
- dev_rna_exp0016-2cae617
- Published
- May 16, 2026 10:30 AM
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| MTAP--CDKN2B-AS1 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr9:21838010:+#chr9:22112320:+,junction_reads: 76,spanning_reads: 1,ffmp: 0.2614 | |
| TMEM65--ANXA13 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:124371854#chr8:123684722,reading-frame: in-frame,type: deletion,split_reads1: 34,split_reads2: 26,discordant_mates: 1,coverage1: 1480,coverage2: 115,confidence: high | position: chr8:124371854:-#chr8:123684722:-,junction_reads: 60,spanning_reads: 1,ffmp: 0.2055 | |
| TBC1D13--AL442224.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr9:128792574#chr9:93825711,reading-frame: out-of-frame,type: duplication,split_reads1: 34,split_reads2: 11,discordant_mates: 0,coverage1: 895,coverage2: 13,confidence: high | position: chr9:128792574:+#chr9:93825711:+,junction_reads: 47,spanning_reads: 0,ffmp: 0.1595 | |
| B4GALT6--DSC3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr18:31684312#chr18:30994372,reading-frame: out-of-frame,type: deletion,split_reads1: 32,split_reads2: 14,discordant_mates: 0,coverage1: 1693,coverage2: 1162,confidence: high | position: chr18:31684312:-#chr18:30994372:-,junction_reads: 47,spanning_reads: 0,ffmp: 0.1595 | |
| CLTC--VMP1 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr17:59690711:+#chr17:59838295:+,junction_reads: 44,spanning_reads: 1,ffmp: 0.1527 | |
| RPSAP52--HMGA2 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr12:65826843:-#chr12:65828001:+,junction_reads: 34,spanning_reads: 0,ffmp: 0.1154 | |
| TMEM123--PDGFD | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:102448812:-#chr11:104000255:-,junction_reads: 31,spanning_reads: 0,ffmp: 0.1052 | ||
| PTPRM--TTC39C | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr18:7567891:+#chr18:24064140:+,junction_reads: 30,spanning_reads: 0,ffmp: 0.1018 | ||
| PDCD1LG2--DYNC2H1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:5535050:+#chr11:103114103:+,junction_reads: 30,spanning_reads: 0,ffmp: 0.1018 | ||
| TMEM123--DYNC2H1 | Mitelman | 0.312 | 0.5 * (0.125) + 0.5 * (0.500) | position: chr11:102448812:-#chr11:103280348:+,junction_reads: 28,spanning_reads: 1,ffmp: 0.0984 | |
| SH3BP5--AC002074.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr3:15304103#chr7:94279390,reading-frame: out-of-frame,type: translocation,split_reads1: 18,split_reads2: 4,discordant_mates: 0,coverage1: 1665,coverage2: 6,confidence: high | position: chr3:15304103:-#chr7:94279390:-,junction_reads: 24,spanning_reads: 0,ffmp: 0.0815 | |
| SRGAP2C--FCGR1B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:121324640:+#chr1:121092996:+,junction_reads: 20,spanning_reads: 0,ffmp: 0.0679 | ||
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 19,spanning_reads: 0,ffmp: 0.0184 | ||
| FLG-AS1--ARHGAP32 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:152251758:+#chr11:128998468:-,junction_reads: 19,spanning_reads: 0,ffmp: 0.0645 | ||
| BIRC3--PDGFD | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:102317571:+#chr11:104000255:-,junction_reads: 18,spanning_reads: 0,ffmp: 0.0611 | ||
| AL033504.1--SASH1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr6:147947519#chr6:148390134,reading-frame: .,type: deletion,split_reads1: 2,split_reads2: 15,discordant_mates: 0,coverage1: 4,coverage2: 703,confidence: high | position: chr6:147947519:+#chr6:148390134:+,junction_reads: 17,spanning_reads: 0,ffmp: 0.0577 | |
| TRIO--TMEM123 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:14143882:+#chr11:102448868:-,junction_reads: 12,spanning_reads: 0,ffmp: 0.0407 | ||
| TPTE--BAGE2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr21:10527412:+#chr21:10514122:+,junction_reads: 11,spanning_reads: 0,ffmp: 0.0373 | ||
| TMEM123--PPP2R2C | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:102448812:-#chr4:6381094:-,junction_reads: 11,spanning_reads: 0,ffmp: 0.0373 | ||
| C6orf62--ACOT13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr6:24714318:-#chr6:24701459:+,junction_reads: 11,spanning_reads: 0,ffmp: 0.0373 | ||
| TMEM123--WTAPP1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:102448812:-#chr11:102798024:+,junction_reads: 9,spanning_reads: 0,ffmp: 0.0305 | ||
| MAP3K20--RAPGEF4 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr2:173091190#chr2:172917802,reading-frame: in-frame,type: duplication,split_reads1: 2,split_reads2: 6,discordant_mates: 0,coverage1: 1094,coverage2: 156,confidence: high | position: chr2:173091190:+#chr2:172917802:+,junction_reads: 8,spanning_reads: 0,ffmp: 0.0272 | |
| NUP214--AP000851.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:131130836#chr11:102657665,reading-frame: out-of-frame,type: translocation,split_reads1: 220,split_reads2: 147,discordant_mates: 5,coverage1: 1684,coverage2: 233,confidence: high | ||
| NUP214--AP000851.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:131130836#chr11:102657665,reading-frame: out-of-frame,type: translocation,split_reads1: 220,split_reads2: 147,discordant_mates: 5,coverage1: 1684,coverage2: 233,confidence: high | ||
| RCC2--CPS1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:17438230#chr2:211097910,reading-frame: out-of-frame,type: translocation,split_reads1: 48,split_reads2: 4,discordant_mates: 0,coverage1: 2158,coverage2: 13,confidence: high | ||
| RCC2--AC012491.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:17438230#chr2:211097910,reading-frame: out-of-frame,type: translocation,split_reads1: 48,split_reads2: 4,discordant_mates: 0,coverage1: 2158,coverage2: 13,confidence: high | ||
| RPL19P4--TUBA3E | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:130300391#chr2:130196371,reading-frame: .,type: deletion/read-through,split_reads1: 8,split_reads2: 32,discordant_mates: 0,coverage1: 41,coverage2: 155,confidence: high | ||
| TEKT4P3--TUBA3E | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:130300391#chr2:130196371,reading-frame: .,type: deletion/read-through,split_reads1: 8,split_reads2: 32,discordant_mates: 0,coverage1: 41,coverage2: 155,confidence: high | ||
| PDCD1LG2--AP001830.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:5535050#chr11:102508782,reading-frame: out-of-frame,type: translocation,split_reads1: 22,split_reads2: 1,discordant_mates: 0,coverage1: 960,coverage2: 0,confidence: high | ||
| PDCD1LG2--MMP7 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:5535050#chr11:102508782,reading-frame: out-of-frame,type: translocation,split_reads1: 22,split_reads2: 1,discordant_mates: 0,coverage1: 960,coverage2: 0,confidence: high | ||
| PDCD1LG2--OR5AP2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:5535050#chr11:56659462,reading-frame: out-of-frame,type: translocation,split_reads1: 14,split_reads2: 2,discordant_mates: 0,coverage1: 960,coverage2: 2,confidence: high | ||
| PDCD1LG2--OR5AR1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:5535050#chr11:56659462,reading-frame: out-of-frame,type: translocation,split_reads1: 14,split_reads2: 2,discordant_mates: 0,coverage1: 960,coverage2: 2,confidence: high | ||
| AP001347.1--ANKRD20A11P | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr21:14027597#chr21:13970110,reading-frame: .,type: inversion,split_reads1: 12,split_reads2: 2,discordant_mates: 1,coverage1: 179,coverage2: 8,confidence: high | ||
| GLIS3--PDGFD | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:4286038#chr11:104193784,reading-frame: out-of-frame,type: translocation,split_reads1: 12,split_reads2: 1,discordant_mates: 0,coverage1: 811,coverage2: 13,confidence: high | ||
| GLIS3--AP003304.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:4286038#chr11:104193784,reading-frame: out-of-frame,type: translocation,split_reads1: 12,split_reads2: 1,discordant_mates: 0,coverage1: 811,coverage2: 13,confidence: high | ||
| AC244669.1--SEC22B3P | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:120340756#chr1:148779001,reading-frame: .,type: duplication,split_reads1: 6,split_reads2: 5,discordant_mates: 0,coverage1: 610,coverage2: 335,confidence: high | ||
| ELAPOR2--TMEM243 | Mitelman | 0.312 | 0.5 * (0.125) + 0.5 * (0.500) | position: chr7:86897506#chr7:87206742,reading-frame: out-of-frame,type: duplication,split_reads1: 5,split_reads2: 3,discordant_mates: 1,coverage1: 74,coverage2: 8,confidence: high |
38 rows