File Info
- Filename
- multiqc_general_stats_controls.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
- Size
- 1.8 KB
- Workflow Run
- dev_rna_exp0016-2cae617
- Published
- May 16, 2026 12:22 PM
Content
View in new tab| sample_id | TOTAL_READS | EXPECTED_DISTINCT | IS_CONTAMINATED | CONTAMINATION_PCT | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | PCT_MITO_EST_COUNTS | PCT_RIBO_EST_COUNTS | PCT_HK_EST_COUNTS | PCT_MALE_EST_COUNTS | MITOCHONDRIAL_CONTAMINATION | RIBOSOMAL_CONTAMINATION | PCT_HK_TPM | PCT_MALE_TPM | READS | FRAC_UNMAPPED | FRAC_DUPES | UNIQUE_READS | FRAC_READS_ON_TARGET | FRAC_PAIRS_ON_TARGET | FRAC_READS_OFF_TARGET | FRAC_PAIRS_OFF_TARGET | READS_ON_TARGET | PAIRS_ON_TARGET | READS_OFF_TARGET | PAIRS_OFF_TARGET | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT30X | FRAC_BASES_GT100X | N_Q30 | GC_BIAS | SUMMED_MEDIAN | SUMMED_MEAN | PERCENT_DUPLICATION | PCT_RIBOSOMAL_BASES | PCT_MRNA_BASES | PROPER_PAIRS_PERCENT | UNIQUELY_MAPPED_PERCENT | MAPPED_READS | PCT_DUPLICATION | AFTER_FILTERING_Q30_RATE | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | AFTER_FILTERING_GC_CONTENT | PCT_SURVIVING | PCT_ADAPTER | FRAGMENT_LENGTH | PERCENT_ALIGNED | PSEUDOALIGNED_READS | PERCENT_DUPLICATES | PERCENT_GC | AVG_SEQUENCE_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_FAILS | TOTAL_SEQUENCES |
| FFPE_HD789_01_RNA_13_A23T55JLT4_1 | 9999000000.0 | 531926337.0 | Yes | 62.05 | 175.8 | 158.0 | 0.01 | 1.71 | 0.76 | 0.0 | 0.01 | 4.92 | 1.09 | 0.0 | 588609644.0 | 0.006159 | 0.409671 | 347473501.0 | 0.945788 | 0.978525 | 0.043778 | 0.021475 | 328636355.0 | 166504100.0 | 15211665.0 | 3654097.0 | 729.006164 | 298.0 | 0.719071 | 0.623105 | 0.972208 | 0.0 | 315 | 932.459799 | 0.41221 | 0.0 | 97.6481 | 90.20313567252451 | 95.92 | 282298648.0 | 29.828 | 0.97106 | 78182985721.0 | 588609644.0 | 0.540505 | 98.10160733333333 | 38.952271833333334 | |||||||||
| NTC_0001_0001_A23T55JLT4_1 | 9999000000.0 | 2116.0 | Skipped | N/A | 91.5 | 100.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1444.0 | 0.443213 | 0.218144 | 1129.0 | 0.080602 | 0.2 | 0.352524 | 0.8 | 91.0 | 47.0 | 398.0 | 188.0 | 0.000138 | 0.0 | 0.0 | 0.0 | 0.93599 | 0.0 | 33 | 51.109195 | 0.391791 | 0.2997 | 45.311800000000005 | 4.687230742719283 | 17.73 | 128.0 | 29.4408 | 0.889823 | 119974.0 | 1444.0 | 0.684571 | 4.137061654824662 | 50.77641531056612 |
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