File Info
- Filename
- run_level_intermediate.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC_run_metrics/intermediate/run_level_intermediate.tsv
- Size
- 2.7 KB
- Workflow Run
- dev_rna_exp0016-2cae617
- Published
- May 16, 2026 12:23 PM
Content
View in new tab| SAMPLE_ID | SOURCE_QC | ANALYTE | PIPELINE_VERSION | QC_METRIC | VALUE | METRIC_ORIGIN |
| RUN | RNA | rnafusion_3.0.2-gunknown | CLUSTER_DENSITY | 9457.29 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | READS_PASSING_FILTER_PERCENT | 73.343 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | Q30_RUN_WIDE_PERCENT | 91.6133 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | OCCUPANCY_RATE | 87.6049 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | YIELD_IN_GB | 9035.606087108 | bclconvert | |
| NTC_0001_0001_A23T55JLT4_1 | NTC | RNA | rnafusion_3.0.2-gunknown | READS | 17452 | bclconvert |
| FFPE_HD789_01_RNA_13_A23T55JLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS | 604274477 | bclconvert |
| FFPE_HD789_01_RNA_13_A23T55JLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 588609644.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23T55JLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_ON_TARGET | 0.945788 | seqtools |
| FFPE_HD789_01_RNA_13_A23T55JLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_ON_TARGET | 0.978525 | seqtools |
| FFPE_HD789_01_RNA_13_A23T55JLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_OFF_TARGET | 0.043778 | seqtools |
| FFPE_HD789_01_RNA_13_A23T55JLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_OFF_TARGET | 0.021475 | seqtools |
| FFPE_HD789_01_RNA_13_A23T55JLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_ON_TARGET | 328636355.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23T55JLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_ON_TARGET | 166504100.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23T55JLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_OFF_TARGET | 15211665.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23T55JLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_OFF_TARGET | 3654097.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23T55JLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | GC_BIAS | 0.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23T55JLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MAPPED_READS | 282298648.0 | star |
| FFPE_HD789_01_RNA_13_A23T55JLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_UNMAPPED | 0.006159 | star |
| FFPE_HD789_01_RNA_13_A23T55JLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAGMENT_LENGTH_MEDIAN | 158.0 | kallisto |
| FFPE_HD789_01_RNA_13_A23T55JLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MITOCHONDRIAL_CONTAMINATION | 0.01 | kallisto |
| FFPE_HD789_01_RNA_13_A23T55JLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | RIBOSOMAL_CONTAMINATION | 4.92 | kallisto |
| FFPE_HD789_01_RNA_13_A23T55JLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PCT_CONTAMINATION | 62.05 | contamination |
| NTC_0001_0001_A23T55JLT4_1 | NTC | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 1444.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23T55JLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_ALL_RNA_FUSIONS | 51 | fusion |
| FFPE_HD789_01_RNA_13_A23T55JLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_TRUE_RNA_FUSIONS | 0 | fusion |
| FFPE_HD789_01_RNA_13_A23T55JLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_FALSE_RNA_FUSIONS | 51 | fusion |
28 rows