#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAR_left	FAR_right	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	FFPM	microh_brkpt_dist	num_microh_near_brkpt
MCM9--CCDC162P	500	1	500.00	0.97	MCM9^ENSG00000111877.18	17266	chr6:118856371:-	CCDC162P^ENSG00000203799.13	39824	chr6:109227059:+	ONLY_REF_SPLICE	YES	82	0	6.05	502.00	GT	1.8323	AG	1.8892	1.7502	2138	0
MCM9--CCDC162P	47	0	47.00	0.00	MCM9^ENSG00000111877.18	13708	chr6:118911650:-	CCDC162P^ENSG00000203799.13	39824	chr6:109227059:+	ONLY_REF_SPLICE	YES	281	0	0.17	48.00	GT	1.9899	AG	1.8892	0.1642	773	0
MCM9--CCDC162P	16	1	16.00	0.03	MCM9^ENSG00000111877.18	17266	chr6:118856371:-	CCDC162P^ENSG00000203799.13	39331	chr6:109226566:+	ONLY_REF_SPLICE	YES	82	0	0.22	18.00	GT	1.8323	AG	1.0530	0.056	2220	0
MCM9--CCDC162P	9	0	9.00	0.00	MCM9^ENSG00000111877.18	17266	chr6:118856371:-	CCDC162P^ENSG00000203799.13	42582	chr6:109239328:+	ONLY_REF_SPLICE	YES	82	0	0.12	10.00	GT	1.8323	AG	1.8892	0.0314	1745	0
MCM9--CCDC162P	5	0	5.00	0.00	MCM9^ENSG00000111877.18	17266	chr6:118856371:-	CCDC162P^ENSG00000203799.13	43775	chr6:109242179:+	ONLY_REF_SPLICE	YES	82	1	0.07	3.00	GT	1.8323	AG	1.9086	0.0175	1265	0
MCM9--CCDC162P	3	0	3.00	0.00	MCM9^ENSG00000111877.18	13713	chr6:118911645:-	CCDC162P^ENSG00000203799.13	39824	chr6:109227059:+	INCL_NON_REF_SPLICE	YES	265	0	0.02	4.00	GT	1.9329	AG	1.8892	0.0105	777	0
STX16--NPEPL1	180	0	180.00	0.00	STX16^ENSG00000124222.22	8855	chr20:58673711:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	256	16	0.70	10.65	GT	1.7968	AG	1.8256	0.6289	1940	0
STX16--NPEPL1	5	0	5.00	0.00	STX16^ENSG00000124222.22	1835	chr20:58652087:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	322	16	0.02	0.35	GT	1.9899	AG	1.8256	0.0175	1258	0
STX16--NPEPL1	4	0	4.00	0.00	STX16^ENSG00000124222.22	8855	chr20:58673711:+	NPEPL1^ENSG00000215440.12	19290	chr20:58693737:+	ONLY_REF_SPLICE	YES	256	395	0.02	0.01	GT	1.7968	AG	1.7819	0.014	1248	0
HSP90AB1--SLC35B2	165	0	165.00	0.00	HSP90AB1^ENSG00000096384.20	8098	chr6:44253263:+	SLC35B2^ENSG00000157593.19	13970	chr6:44255644:-	INCL_NON_REF_SPLICE	YES	981	263	0.17	0.63	GT	1.6402	AG	1.8295	0.5765	282	0
HSP90AB1--SLC35B2	17	0	17.00	0.00	HSP90AB1^ENSG00000096384.20	8096	chr6:44253261:+	SLC35B2^ENSG00000157593.19	13967	chr6:44255647:-	INCL_NON_REF_SPLICE	YES	974	252	0.02	0.07	CA	1.6402	AA	1.8892	0.0594	285	0
HSP90AB1--SLC35B2	6	0	6.00	0.00	HSP90AB1^ENSG00000096384.20	8095	chr6:44253260:+	SLC35B2^ENSG00000157593.19	13970	chr6:44255644:-	INCL_NON_REF_SPLICE	YES	938	263	0.01	0.03	GC	1.6402	AG	1.8295	0.021	284	0
HSP90AB1--SLC35B2	1	0	1.00	0.00	HSP90AB1^ENSG00000096384.20	7102	chr6:44252267:+	SLC35B2^ENSG00000157593.19	13970	chr6:44255644:-	ONLY_REF_SPLICE	YES	1025	263	0.00	0.01	GT	1.4295	AG	1.8295	0.0035	159	0
HSP90AB1--SLC35B2	1	0	1.00	0.00	HSP90AB1^ENSG00000096384.20	4669	chr6:44249834:+	SLC35B2^ENSG00000157593.19	13970	chr6:44255644:-	ONLY_REF_SPLICE	YES	1431	263	0.00	0.01	GT	1.9329	AG	1.8295	0.0035	724	0
TVP23C--CDRT4	140	0	140.00	0.00	TVP23C^ENSG00000175106.17	14926	chr17:15503098:-	CDRT4^ENSG00000239704.11	22624	chr17:15440285:-	INCL_NON_REF_SPLICE	YES	94	12	1.48	10.85	GT	1.9329	AG	1.9899	0.4891	1215	0
TVP23C--CDRT4	119	0	119.00	0.00	TVP23C^ENSG00000175106.17	7982	chr17:15540433:-	CDRT4^ENSG00000239704.11	22624	chr17:15440285:-	ONLY_REF_SPLICE	YES	328	12	0.36	9.23	GT	1.8323	AG	1.9899	0.4157	2126	0
TVP23C--CDRT4	49	0	49.00	0.00	TVP23C^ENSG00000175106.17	14926	chr17:15503098:-	CDRT4^ENSG00000239704.11	23702	chr17:15438200:-	INCL_NON_REF_SPLICE	YES	94	74	0.53	0.67	GT	1.9329	AG	1.6402	0.1712	137	0
TVP23C--CDRT4	36	0	36.00	0.00	TVP23C^ENSG00000175106.17	7982	chr17:15540433:-	CDRT4^ENSG00000239704.11	23702	chr17:15438200:-	ONLY_REF_SPLICE	YES	328	74	0.11	0.49	GT	1.8323	AG	1.6402	0.1258	1363	0
TVP23C--CDRT4	18	0	18.00	0.00	TVP23C^ENSG00000175106.17	6853	chr17:15545785:-	CDRT4^ENSG00000239704.11	22624	chr17:15440285:-	ONLY_REF_SPLICE	YES	142	12	0.13	1.46	GT	1.9086	AG	1.9899	0.0629	1774	0
TVP23C--CDRT4	9	0	9.00	0.00	TVP23C^ENSG00000175106.17	12676	chr17:15516419:-	CDRT4^ENSG00000239704.11	22624	chr17:15440285:-	ONLY_REF_SPLICE	YES	23	12	0.42	0.77	GT	1.8892	AG	1.9899	0.0314	1949	0
TVP23C--CDRT4	4	0	4.00	0.00	TVP23C^ENSG00000175106.17	6853	chr17:15545785:-	CDRT4^ENSG00000239704.11	23702	chr17:15438200:-	ONLY_REF_SPLICE	YES	142	74	0.03	0.07	GT	1.9086	AG	1.6402	0.014	697	0
HNRNPUL1--LIPE-AS1	110	0	110.00	0.00	HNRNPUL1^ENSG00000105323.17	10612	chr19:41279176:+	LIPE-AS1^ENSG00000213904.9	34347	chr19:42485096:+	ONLY_REF_SPLICE	YES	295	210	0.38	0.53	GT	1.8062	AG	1.8323	0.3843	1766	0
HNRNPUL1--LIPE-AS1	69	0	69.00	0.00	HNRNPUL1^ENSG00000105323.17	10612	chr19:41279176:+	LIPE-AS1^ENSG00000213904.9	34386	chr19:42485135:+	ONLY_REF_SPLICE	YES	295	236	0.24	0.30	GT	1.8062	AG	1.7232	0.2411	1791	0
HNRNPUL1--LIPE-AS1	22	0	22.00	0.00	HNRNPUL1^ENSG00000105323.17	10612	chr19:41279176:+	LIPE-AS1^ENSG00000213904.9	39283	chr19:42651087:+	ONLY_REF_SPLICE	YES	295	0	0.08	23.00	GT	1.8062	AG	1.6729	0.0769	2414	0
HBS1L--LINC01312	96	0	96.00	0.00	HBS1L^ENSG00000112339.15	13372	chr6:134996777:-	LINC01312^ENSG00000223586.6	33372	chr6:133821547:+	INCL_NON_REF_SPLICE	YES	175	0	0.55	97.00	GT	1.2729	AG	1.9329	0.3354	791	0
HBS1L--LINC01312	7	0	7.00	0.00	HBS1L^ENSG00000112339.15	12752	chr6:134997397:-	LINC01312^ENSG00000223586.6	33372	chr6:133821547:+	INCL_NON_REF_SPLICE	YES	469	0	0.02	8.00	GT	1.8892	AG	1.9329	0.0245	312	0
HBS1L--LINC01312	4	0	4.00	0.00	HBS1L^ENSG00000112339.15	12752	chr6:134997397:-	LINC01312^ENSG00000223586.6	34979	chr6:133837593:+	ONLY_REF_SPLICE	YES	469	0	0.01	5.00	GT	1.8892	AG	1.9656	0.014	261	0
TLK2--AC240565.1	76	0	65.56	0.00	TLK2^ENSG00000146872.18	17137	chr17:62560126:+	AC240565.1^ENSG00000280136.2	41242	chr17:106864:-	ONLY_REF_SPLICE	YES	286	30	0.27	2.48	GT	1.8892	AG	1.8892	0.229	1734	0
ANKRD12--RAB31	69	0	69.00	0.00	ANKRD12^ENSG00000101745.17	1869	chr18:9137096:+	RAB31^ENSG00000168461.13	37596	chr18:9775278:+	ONLY_REF_SPLICE	YES	39	322	1.75	0.22	GT	1.7465	AG	1.7232	0.2411	3319	0
ANKRD12--RAB31	32	0	32.00	0.00	ANKRD12^ENSG00000101745.17	1738	chr18:9136965:+	RAB31^ENSG00000168461.13	37596	chr18:9775278:+	ONLY_REF_SPLICE	YES	21	322	1.50	0.10	GT	1.5058	AG	1.7232	0.1118	3311	0
ANKRD12--RAB31	3	0	3.00	0.00	ANKRD12^ENSG00000101745.17	1748	chr18:9136975:+	RAB31^ENSG00000168461.13	37596	chr18:9775278:+	INCL_NON_REF_SPLICE	YES	22	322	0.17	0.01	GT	1.7819	AG	1.7232	0.0105	3311	0
ANKRD12--RAB31	1	0	1.00	0.00	ANKRD12^ENSG00000101745.17	1738	chr18:9136965:+	RAB31^ENSG00000168461.13	38677	chr18:9792154:+	ONLY_REF_SPLICE	YES	21	274	0.09	0.01	GT	1.5058	AG	1.9219	0.0035	4391	0
PCDHA7--PCDHAC1	68	0	34.00	0.00	PCDHA7^ENSG00000204963.6	3491	chr5:140836738:+	PCDHAC1^ENSG00000248383.5	12070	chr5:140978949:+	INCL_NON_REF_SPLICE	YES	25	0	2.65	69.00	GT	1.8256	AG	1.3996	0.1188	1133	0
PCDHA7--PCDHAC2	68	0	34.00	0.00	PCDHA7^ENSG00000204963.6	3491	chr5:140836738:+	PCDHAC2^ENSG00000243232.6	10934	chr5:140978949:+	INCL_NON_REF_SPLICE	YES	25	2	2.65	23.00	GT	1.8256	AG	1.3996	0.1188	2264	0
TLK2P1--AC110079.1	64	0	50.44	0.00	TLK2P1^ENSG00000226049.3	1830	chr17:34039043:-	AC110079.1^ENSG00000260404.3	8316	chr4:118595912:+	INCL_NON_REF_SPLICE	YES	37	20	1.71	3.10	GT	1.7465	AG	1.8892	0.1762	311	0
LAMA2--CDK19	51	0	51.00	0.00	LAMA2^ENSG00000196569.13	1220	chr6:128883357:+	CDK19^ENSG00000155111.15	83405	chr6:110670541:-	ONLY_REF_SPLICE	YES	105	349	0.49	0.15	GT	1.7465	AG	1.8892	0.1782	2575	0
LAMA2--CDK19	1	0	1.00	0.00	LAMA2^ENSG00000196569.13	1220	chr6:128883357:+	CDK19^ENSG00000155111.15	85657	chr6:110638706:-	ONLY_REF_SPLICE	YES	105	233	0.02	0.01	GT	1.7465	AG	1.6402	0.0035	2485	0
AC092807.3--DDAH1	49	0	49.00	0.00	AC092807.3^ENSG00000282057.1	5553	chr1:85496166:-	DDAH1^ENSG00000153904.21	16212	chr1:85358847:-	ONLY_REF_SPLICE	YES	0	24	50.00	2.00	GT	1.5628	AG	1.8062	0.1712	3011	0
AC092807.3--DDAH1	7	0	7.00	0.00	AC092807.3^ENSG00000282057.1	1267	chr1:85577984:-	DDAH1^ENSG00000153904.21	16212	chr1:85358847:-	ONLY_REF_SPLICE	YES	0	24	8.00	0.32	GT	1.8062	AG	1.8062	0.0245	2484	0
AC092807.3--DDAH1	3	0	3.00	0.00	AC092807.3^ENSG00000282057.1	9402	chr1:85488291:-	DDAH1^ENSG00000153904.21	16212	chr1:85358847:-	ONLY_REF_SPLICE	YES	0	24	4.00	0.16	GT	1.8892	AG	1.8062	0.0105	2892	0
FNDC3B--SLC7A14-AS1	42	0	42.00	0.00	FNDC3B^ENSG00000075420.13	6382	chr3:172133546:+	SLC7A14-AS1^ENSG00000285051.2	62716	chr3:170708044:+	ONLY_REF_SPLICE	YES	2720	6	0.02	6.14	GT	1.9656	AG	1.7465	0.1467	3137	0
FNDC3B--SLC7A14-AS1	14	0	14.00	0.00	FNDC3B^ENSG00000075420.13	6382	chr3:172133546:+	SLC7A14-AS1^ENSG00000285051.2	54893	chr3:170591114:+	ONLY_REF_SPLICE	YES	2720	0	0.01	15.00	GT	1.9656	AG	1.9656	0.0489	3328	0
FNDC3B--SLC7A14-AS1	8	0	8.00	0.00	FNDC3B^ENSG00000075420.13	6382	chr3:172133546:+	SLC7A14-AS1^ENSG00000285051.2	68087	chr3:170859983:+	ONLY_REF_SPLICE	YES	2720	7	0.00	1.12	GT	1.9656	AG	1.8892	0.0279	2151	0
FNDC3B--SLC7A14-AS1	3	0	3.00	0.00	FNDC3B^ENSG00000075420.13	6382	chr3:172133546:+	SLC7A14-AS1^ENSG00000285051.2	63867	chr3:170725560:+	ONLY_REF_SPLICE	YES	2720	5	0.00	0.67	GT	1.9656	AG	1.9329	0.0105	3373	0
FNDC3B--SLC7A14-AS1	1	0	1.00	0.00	FNDC3B^ENSG00000075420.13	6382	chr3:172133546:+	SLC7A14-AS1^ENSG00000285051.2	60392	chr3:170670174:+	ONLY_REF_SPLICE	YES	2720	3	0.00	0.50	GT	1.9656	AG	1.8062	0.0035	2163	0
SESN1--CLVS2	30	1	30.00	1.00	SESN1^ENSG00000080546.13	2025	chr6:109093795:-	CLVS2^ENSG00000146352.13	27066	chr6:123063674:+	ONLY_REF_SPLICE	YES	91	6	0.35	4.57	GT	1.9329	AG	1.9086	0.1083	1257	0
CDV3--MT-RNR2	24	0	24.00	0.00	CDV3^ENSG00000091527.16	2430	chr3:133575115:+	MT-RNR2^ENSG00000210082.2	12057	chrM:2449:+	INCL_NON_REF_SPLICE	YES	563	0	0.04	25.00	GT	1.7968	AG	1.2419	0.0838	3615	0
CDV3--MT-RNR2	5	0	5.00	0.00	CDV3^ENSG00000091527.16	2430	chr3:133575115:+	MT-RNR2^ENSG00000210082.2	12044	chrM:2436:+	INCL_NON_REF_SPLICE	YES	563	0	0.01	6.00	GT	1.7968	AG	1.9656	0.0175	3614	0
NKAIN2--LAMA2	24	0	24.00	0.00	NKAIN2^ENSG00000188580.15	1390	chr6:123804254:+	LAMA2^ENSG00000196569.13	20595	chr6:129049918:+	ONLY_REF_SPLICE	YES	6	113	3.57	0.22	GT	1.9656	AG	1.7465	0.0838	2216	0
CCDC162P--AL137009.1	23	0	23.00	0.00	CCDC162P^ENSG00000203799.13	52641	chr6:109348547:+	AL137009.1^ENSG00000253194.2	59892	chr6:119006483:+	ONLY_REF_SPLICE	YES	0	98	24.00	0.24	GT	1.7465	AG	1.9219	0.0804	1132	0
CCDC162P--AL137009.1	2	0	2.00	0.00	CCDC162P^ENSG00000203799.13	51520	chr6:109344196:+	AL137009.1^ENSG00000253194.2	59892	chr6:119006483:+	ONLY_REF_SPLICE	YES	0	98	3.00	0.03	GT	1.8062	AG	1.9219	0.007	2250	0
RPL23AP53--ATP8A2	19	0	19.00	0.00	RPL23AP53^ENSG00000223508.5	1103	chr8:232129:-	ATP8A2^ENSG00000132932.18	37085	chr13:25699173:+	ONLY_REF_SPLICE	YES	4	0	4.00	20.00	GT	1.9086	AG	1.5656	0.0664	4939	0
RPL23AP53--ATP8A2	2	0	2.00	0.00	RPL23AP53^ENSG00000223508.5	4131	chr8:219290:-	ATP8A2^ENSG00000132932.18	37085	chr13:25699173:+	ONLY_REF_SPLICE	YES	4	0	0.60	3.00	GT	1.8323	AG	1.5656	0.007	2558	0
LARP4B--LAMA2	18	0	18.00	0.00	LARP4B^ENSG00000107929.15	8420	chr10:863743:-	LAMA2^ENSG00000196569.13	34965	chr6:129049918:+	ONLY_REF_SPLICE	YES	427	113	0.04	0.17	GT	1.6402	AG	1.7465	0.0629	2349	0
KCNK5--SLC2A12	16	0	16.00	0.00	KCNK5^ENSG00000164626.9	4254	chr6:39194169:-	SLC2A12^ENSG00000146411.6	16884	chr6:133991308:-	ONLY_REF_SPLICE	YES	114	174	0.15	0.10	GT	1.7819	AG	1.6729	0.0559	1783	0
TBC1D32--EPB41L2	16	0	16.00	0.00	TBC1D32^ENSG00000146350.14	23143	chr6:121223236:-	EPB41L2^ENSG00000079819.19	55120	chr6:130956499:-	ONLY_REF_SPLICE	YES	35	367	0.47	0.05	GT	1.8892	AG	1.9899	0.0559	2327	0
TBC1D32--EPB41L2	8	0	8.00	0.00	TBC1D32^ENSG00000146350.14	24232	chr6:121205075:-	EPB41L2^ENSG00000079819.19	55120	chr6:130956499:-	ONLY_REF_SPLICE	YES	37	367	0.24	0.02	GT	1.8295	AG	1.9899	0.0279	1436	0
PTPRK--PDE7B	14	1	14.00	1.00	PTPRK^ENSG00000152894.15	5860	chr6:128397566:-	PDE7B^ENSG00000171408.14	57795	chr6:136147351:+	ONLY_REF_SPLICE	YES	451	9	0.04	1.60	GT	1.8062	AG	1.8892	0.0524	4711	0
KLRC4--KLRK1	13	0	13.00	0.00	KLRC4^ENSG00000183542.5	3122	chr12:10407636:-	KLRK1^ENSG00000213809.9	8583	chr12:10388875:-	INCL_NON_REF_SPLICE	YES	3	15	3.50	0.88	GT	1.3996	AG	1.9219	0.0454	1207	0
CEP57L1--FIG4	12	0	12.00	0.00	CEP57L1^ENSG00000183137.15	1466	chr6:109095575:+	FIG4^ENSG00000112367.12	81641	chr6:109825088:+	ONLY_REF_SPLICE	YES	35	123	0.36	0.10	GT	1.8892	AG	1.7968	0.0419	1290	0
CEP57L1--FIG4	6	0	6.00	0.00	CEP57L1^ENSG00000183137.15	3617	chr6:109106090:+	FIG4^ENSG00000112367.12	81641	chr6:109825088:+	ONLY_REF_SPLICE	YES	46	123	0.15	0.06	GT	1.8295	AG	1.7968	0.021	1326	0