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Filename
1173_JLC_T1_RNA_SLD_01_A23T55JLT4_2.FusionInspector.fusions.abridged.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__73d51683--20260607-225254/fusioninspector/1173_JLC_T1_RNA_SLD_01_A23T55JLT4_2.FusionInspector.fusions.abridged.tsv
Size
11.4 KB
Workflow Run
dev_rna_exp0016-73d51683
Published
Jun 08, 2026 5:54 AM

Content

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
PKD1--PKMYT1 258 3 258.00 2.99 PKD1^ENSG00000008710.20 23890 chr16:2097728:- PKMYT1^ENSG00000127564.17 44544 chr16:2968515:- ONLY_REF_SPLICE YES 236 36 1.11 7.08 GT 1.8256 AG 1.6895 0.8867 545 0
PKD1--PKMYT1 2 1 2.00 0.01 PKD1^ENSG00000008710.20 23750 chr16:2097868:- PKMYT1^ENSG00000127564.17 44544 chr16:2968515:- ONLY_REF_SPLICE YES 259 36 0.02 0.11 GT 1.8323 AG 1.6895 0.0068 471 0
NFKB1--CISD2 242 0 242.00 0.00 NFKB1^ENSG00000109320.13 15079 chr4:102580639:+ CISD2^ENSG00000145354.12 38245 chr4:102885216:+ ONLY_REF_SPLICE YES 334 651 0.73 0.37 GT 1.7232 AG 1.9219 0.8222 1890 0
NFKB1--CISD2 3 0 3.00 0.00 NFKB1^ENSG00000109320.13 15079 chr4:102580639:+ CISD2^ENSG00000145354.12 38251 chr4:102885222:+ INCL_NON_REF_SPLICE YES 334 664 0.01 0.01 GT 1.7232 AG 1.8892 0.0102 1886 0
NFKB1--CISD2 2 0 2.00 0.00 NFKB1^ENSG00000109320.13 11974 chr4:102577039:+ CISD2^ENSG00000145354.12 38245 chr4:102885216:+ ONLY_REF_SPLICE YES 387 651 0.01 0.00 GT 1.7465 AG 1.9219 0.0068 1607 0
NFKB1--CISD2 1 0 1.00 0.00 NFKB1^ENSG00000109320.13 15079 chr4:102580639:+ CISD2^ENSG00000145354.12 37142 chr4:102882771:+ ONLY_REF_SPLICE YES 334 622 0.01 0.00 GT 1.7232 AG 1.7465 0.0034 2786 0
CASTOR2--LIMK1 196 0 196.00 0.00 CASTOR2^ENSG00000274070.2 1394 chr7:74965098:+ LIMK1^ENSG00000106683.15 23760 chr7:74096622:+ ONLY_REF_SPLICE YES 232 622 0.85 0.32 GT 1.8892 AG 1.8323 0.6659 1178 0
CASTOR2--LIMK1 1 0 1.00 0.00 CASTOR2^ENSG00000274070.2 1394 chr7:74965098:+ LIMK1^ENSG00000106683.15 25328 chr7:74099032:+ ONLY_REF_SPLICE YES 232 1312 0.01 0.00 GT 1.8892 AG 1.9656 0.0034 2369 0
TRIM35--SCARA5 149 0 149.00 0.00 TRIM35^ENSG00000104228.13 1472 chr8:27310801:- SCARA5^ENSG00000168079.17 16772 chr8:27922245:- ONLY_REF_SPLICE YES 271 33 0.55 4.41 GT 1.8892 AG 1.8323 0.5062 263 0
TRIM35--SCARA5 8 0 8.00 0.00 TRIM35^ENSG00000104228.13 1472 chr8:27310801:- SCARA5^ENSG00000168079.17 18447 chr8:27909743:- ONLY_REF_SPLICE YES 271 105 0.03 0.08 GT 1.8892 AG 1.5058 0.0272 1470 0
TVP23C--CDRT4 126 0 126.00 0.00 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- INCL_NON_REF_SPLICE YES 117 17 1.08 7.06 GT 1.9329 AG 1.9899 0.4281 1215 0
TVP23C--CDRT4 45 0 45.00 0.00 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- INCL_NON_REF_SPLICE YES 117 66 0.39 0.69 GT 1.9329 AG 1.6402 0.1529 137 0
TVP23C--CDRT4 32 0 32.00 0.00 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 269 17 0.12 1.83 GT 1.8323 AG 1.9899 0.1087 2126 0
TVP23C--CDRT4 21 0 21.00 0.00 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- ONLY_REF_SPLICE YES 269 66 0.08 0.33 GT 1.8323 AG 1.6402 0.0713 1363 0
TVP23C--CDRT4 19 0 19.00 0.00 TVP23C^ENSG00000175106.17 12676 chr17:15516419:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 37 17 0.53 1.11 GT 1.8892 AG 1.9899 0.0645 1949 0
TVP23C--CDRT4 3 0 3.00 0.00 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 21051 chr17:15453085:- INCL_NON_REF_SPLICE YES 117 0 0.03 4.00 GT 1.9329 AG 1.8892 0.0102 1153 0
TVP23C--CDRT4 1 0 1.00 0.00 TVP23C^ENSG00000175106.17 12676 chr17:15516419:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- ONLY_REF_SPLICE YES 37 66 0.05 0.03 GT 1.8892 AG 1.6402 0.0034 873 0
TVP23C--CDRT4 1 0 1.00 0.00 TVP23C^ENSG00000175106.17 6853 chr17:15545785:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 289 17 0.01 0.11 GT 1.9086 AG 1.9899 0.0034 1774 0
VTI1A--TCF7L2 121 0 121.00 0.00 VTI1A^ENSG00000151532.14 6899 chr10:112464657:+ TCF7L2^ENSG00000148737.17 26793 chr10:113040025:+ ONLY_REF_SPLICE YES 302 507 0.40 0.24 GT 1.9086 AG 1.8892 0.4111 3451 0
STX16--NPEPL1 108 1 108.00 0.97 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 485 117 0.23 0.93 GT 1.7968 AG 1.8256 0.3702 1940 0
STX16--NPEPL1 3 1 3.00 0.03 STX16^ENSG00000124222.22 7774 chr20:58671297:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 478 117 0.01 0.04 GT 1.8062 AG 1.8256 0.0103 2729 0
TLK2--AC240565.1 107 0 101.72 0.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ AC240565.1^ENSG00000280136.2 41242 chr17:106864:- ONLY_REF_SPLICE YES 356 37 0.30 2.84 GT 1.8892 AG 1.8892 0.3456 1734 0
PCDHGB2--PCDHGA10 81 0 10.12 0.00 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGA10^ENSG00000253846.2 12051 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 88 82.00 0.92 GT 1.7819 AG 1.3383 0.0344 1890 0
PCDHGB2--PCDHGA11 81 0 10.12 0.00 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGA11^ENSG00000253873.6 11222 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 73 82.00 1.11 GT 1.7819 AG 1.3383 0.0344 1018 0
PCDHGB2--PCDHGA12 81 0 10.12 0.00 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGA12^ENSG00000253159.3 10305 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 52 82.00 1.55 GT 1.7819 AG 1.3383 0.0344 1413 0
PCDHGB2--PCDHGA8 81 0 10.12 0.00 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGA8^ENSG00000253767.3 14069 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 15 82.00 5.12 GT 1.7819 AG 1.3383 0.0344 1419 0
PCDHGB2--PCDHGA9 81 0 10.12 0.00 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGA9^ENSG00000261934.2 10157 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 47 82.00 1.71 GT 1.7819 AG 1.3383 0.0344 1493 0
PCDHGB2--PCDHGC3 81 0 10.12 0.00 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGC3^ENSG00000240184.7 10438 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 339 82.00 0.24 GT 1.7819 AG 1.3383 0.0344 1210 0
PCDHGB2--PCDHGC4 81 0 10.12 0.00 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGC4^ENSG00000242419.5 10382 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 4 82.00 16.40 GT 1.7819 AG 1.3383 0.0344 1585 0
PCDHGB2--PCDHGC5 81 0 10.12 0.00 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGC5^ENSG00000240764.4 10438 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 1 82.00 41.00 GT 1.7819 AG 1.3383 0.0344 1206 0
GRK2--KDM2A 71 0 71.00 0.00 GRK2^ENSG00000173020.11 4223 chr11:67277348:+ KDM2A^ENSG00000173120.15 46158 chr11:67257484:+ INCL_NON_REF_SPLICE YES 1266 0 0.06 72.00 GT 1.9899 AG 1.8892 0.2412 76 1
TLK2P1--AC110079.1 65 0 55.28 0.00 TLK2P1^ENSG00000226049.3 1830 chr17:34039043:- AC110079.1^ENSG00000260404.3 8316 chr4:118595912:+ INCL_NON_REF_SPLICE YES 20 43 3.14 1.50 GT 1.7465 AG 1.8892 0.1878 311 0
GRAMD4--WDR97 61 2 61.00 2.00 GRAMD4^ENSG00000075240.17 2229 chr22:46577290:+ WDR97^ENSG00000179698.14 34193 chr8:144115943:+ ONLY_REF_SPLICE YES 76 313 0.83 0.20 GT 1.9656 AG 1.6729 0.214 319 0
TENT4B--RMI2 58 1 58.00 0.76 TENT4B^ENSG00000121274.14 2349 chr16:50154259:+ RMI2^ENSG00000175643.10 30478 chr16:11379822:+ ONLY_REF_SPLICE YES 74 13 0.80 4.29 GT 1.7232 AG 1.7968 0.1996 1411 0
TENT4B--RMI2 18 1 18.00 0.24 TENT4B^ENSG00000121274.14 2349 chr16:50154259:+ RMI2^ENSG00000175643.10 28359 chr16:11350642:+ ONLY_REF_SPLICE YES 74 348 0.27 0.06 GT 1.7232 AG 1.5656 0.062 1146 0
TENT4B--RMI2 1 0 1.00 0.00 TENT4B^ENSG00000121274.14 1122 chr16:50153032:+ RMI2^ENSG00000175643.10 28359 chr16:11350642:+ ONLY_REF_SPLICE YES 36 348 0.05 0.01 GT 1.6402 AG 1.5656 0.0034 1146 0
KLRC4--KLRK1 53 1 53.00 0.95 KLRC4^ENSG00000183542.5 3122 chr12:10407636:- KLRK1^ENSG00000213809.9 8583 chr12:10388875:- INCL_NON_REF_SPLICE YES 28 78 1.90 0.70 GT 1.3996 AG 1.9219 0.1833 1207 0
KLRC4--KLRK1 3 1 3.00 0.05 KLRC4^ENSG00000183542.5 3122 chr12:10407636:- KLRK1^ENSG00000213809.9 6360 chr12:10391891:- INCL_NON_REF_SPLICE YES 28 0 0.17 5.00 GT 1.3996 AG 1.6895 0.0104 3430 0
NR6A1--SCAI 31 0 31.00 0.00 NR6A1^ENSG00000148200.17 4637 chr9:124554328:- SCAI^ENSG00000173611.18 25602 chr9:125029739:- ONLY_REF_SPLICE YES 46 77 0.68 0.41 GT 1.6895 AG 1.8892 0.1053 5184 0
ETV6--AC008014.1 29 0 29.00 0.00 ETV6^ENSG00000139083.11 1487 chr12:11650160:+ AC008014.1^ENSG00000257261.6 31901 chr12:46874817:+ ONLY_REF_SPLICE YES 2473 0 0.01 30.00 GT 1.9329 AG 1.9329 0.0985 474 0
ETV6--AC008014.1 15 0 15.00 0.00 ETV6^ENSG00000139083.11 1487 chr12:11650160:+ AC008014.1^ENSG00000257261.6 33659 chr12:46876575:+ INCL_NON_REF_SPLICE YES 2473 0 0.01 16.00 GT 1.9329 AG 1.9329 0.051 1276 0
ANO2--NOP2 27 0 27.00 0.00 ANO2^ENSG00000047617.15 4549 chr12:5921040:- NOP2^ENSG00000111641.12 54126 chr12:6557642:- ONLY_REF_SPLICE YES 68 227 0.41 0.12 GT 1.6895 AG 1.8295 0.0917 464 0
AC092807.3--DDAH1 24 1 24.00 0.83 AC092807.3^ENSG00000282057.1 5553 chr1:85496166:- DDAH1^ENSG00000153904.21 16212 chr1:85358847:- ONLY_REF_SPLICE YES 0 82 26.00 0.31 GT 1.5628 AG 1.8062 0.0843 3011 0
AC092807.3--DDAH1 4 1 4.00 0.14 AC092807.3^ENSG00000282057.1 1267 chr1:85577984:- DDAH1^ENSG00000153904.21 16212 chr1:85358847:- ONLY_REF_SPLICE YES 0 82 6.00 0.07 GT 1.8062 AG 1.8062 0.0141 2484 0
AC092807.3--DDAH1 1 1 1.00 0.03 AC092807.3^ENSG00000282057.1 3294 chr1:85575832:- DDAH1^ENSG00000153904.21 16212 chr1:85358847:- ONLY_REF_SPLICE YES 0 82 3.00 0.04 GT 1.6895 AG 1.8062 0.0035 3244 0
AC092807.3--DDAH1 1 0 1.00 0.00 AC092807.3^ENSG00000282057.1 5553 chr1:85496166:- DDAH1^ENSG00000153904.21 17312 chr1:85351579:- ONLY_REF_SPLICE YES 0 88 2.00 0.02 GT 1.5628 AG 1.8062 0.0034 2313 0
MROH1--AL021392.1 24 0 24.00 0.00 MROH1^ENSG00000179832.17 5212 chr8:144168440:+ AL021392.1^ENSG00000234869.1 43690 chr22:46546688:+ ONLY_REF_SPLICE YES 1593 1 0.02 12.50 GT 1.8256 AG 1.7232 0.0815 927 0
PABPC1L--CCN5 24 0 24.00 0.00 PABPC1L^ENSG00000101104.13 16033 chr20:44938748:+ CCN5^ENSG00000064205.11 28922 chr20:44727087:+ ONLY_REF_SPLICE YES 1020 256 0.02 0.10 GT 1.8892 AG 1.9086 0.0815 323 0
PABPC1L--CCN5 7 0 7.00 0.00 PABPC1L^ENSG00000101104.13 15476 chr20:44938191:+ CCN5^ENSG00000064205.11 28922 chr20:44727087:+ ONLY_REF_SPLICE YES 1437 256 0.01 0.03 GT 1.8295 AG 1.9086 0.0238 440 0
PABPC1L--CCN5 4 0 4.00 0.00 PABPC1L^ENSG00000101104.13 17664 chr20:44952704:+ CCN5^ENSG00000064205.11 28922 chr20:44727087:+ ONLY_REF_SPLICE YES 66 256 0.07 0.02 GT 1.9219 AG 1.9086 0.0136 1707 0
ARHGEF35-AS1--ARHGEF35 21 0 21.00 0.00 ARHGEF35-AS1^ENSG00000244198.7 15289 chr7:144251610:+ ARHGEF35^ENSG00000213214.5 23004 chr7:144195701:- INCL_NON_REF_SPLICE YES 98 0 0.22 22.00 CT 1.5656 AC 1.9899 0.0713 1685 0
ARHGEF35-AS1--ARHGEF35 12 0 12.00 0.00 ARHGEF35-AS1^ENSG00000244198.7 12029 chr7:144239388:+ ARHGEF35^ENSG00000213214.5 24168 chr7:144188395:- ONLY_REF_SPLICE YES 4 69 2.60 0.19 GT 1.9329 AG 1.9899 0.0408 1043 0
ARHGEF35-AS1--ARHGEF35 12 0 12.00 0.00 ARHGEF35-AS1^ENSG00000244198.7 5762 chr7:144207804:+ ARHGEF35^ENSG00000213214.5 24168 chr7:144188395:- ONLY_REF_SPLICE YES 2 69 4.33 0.19 GT 1.8256 AG 1.9899 0.0408 1256 0
ATG5--AC004083.1 17 0 17.00 0.00 ATG5^ENSG00000057663.16 7147 chr6:106248150:- AC004083.1^ENSG00000254180.2 32445 chr8:90201050:- ONLY_REF_SPLICE YES 176 0 0.10 18.00 GT 1.7056 AG 1.2729 0.0578 1088 0
LCLAT1--GRID1 11 0 11.00 0.00 LCLAT1^ENSG00000172954.14 7152 chr2:30533314:+ GRID1^ENSG00000182771.19 26647 chr10:85916239:- ONLY_REF_SPLICE YES 140 16 0.09 0.71 GT 1.6895 AG 1.8256 0.0374 2463 0
SASH1--AL589693.1 5 0 5.00 0.00 SASH1^ENSG00000111961.18 4813 chr6:148440407:+ AL589693.1^ENSG00000287092.1 36579 chr6:156294754:- ONLY_REF_SPLICE YES 244 0 0.02 6.00 GT 1.2310 AG 1.9329 0.017 2784 0
ACTBP6--ACTB 4 0 4.00 0.00 ACTBP6^ENSG00000203413.3 1385 chr8:84948969:+ ACTB^ENSG00000075624.17 11169 chr7:5528696:- INCL_NON_REF_SPLICE YES 0 7359 5.00 0.00 TC 1.9329 AC 1.9219 0.0136 3 20
58 rows