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Filename
1173_JLC_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.abridged.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__73d51683--20260607-225254/fusioninspector/1173_JLC_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.abridged.tsv
Size
9.4 KB
Workflow Run
dev_rna_exp0016-73d51683
Published
Jun 08, 2026 6:05 AM

Content

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
PKD1--PKMYT1 299 1 299.00 1.00 PKD1^ENSG00000008710.20 23890 chr16:2097728:- PKMYT1^ENSG00000127564.17 44544 chr16:2968515:- ONLY_REF_SPLICE YES 152 37 1.97 7.92 GT 1.8256 AG 1.6895 1.0173 545 0
NFKB1--CISD2 227 2 227.00 1.99 NFKB1^ENSG00000109320.13 15079 chr4:102580639:+ CISD2^ENSG00000145354.12 38245 chr4:102885216:+ ONLY_REF_SPLICE YES 236 582 0.97 0.39 GT 1.7232 AG 1.9219 0.7765 1890 0
NFKB1--CISD2 1 2 1.00 0.01 NFKB1^ENSG00000109320.13 15079 chr4:102580639:+ CISD2^ENSG00000145354.12 35980 chr4:102874510:+ ONLY_REF_SPLICE YES 236 538 0.02 0.01 GT 1.7232 AG 1.9656 0.0034 3848 0
CASTOR2--LIMK1 150 2 150.00 2.00 CASTOR2^ENSG00000274070.2 1394 chr7:74965098:+ LIMK1^ENSG00000106683.15 23760 chr7:74096622:+ ONLY_REF_SPLICE YES 210 546 0.73 0.28 GT 1.8892 AG 1.8323 0.5155 1178 0
PCDHGB2--PCDHGC3 126 0 126.00 0.00 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGC3^ENSG00000240184.7 10438 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 306 127.00 0.41 GT 1.7819 AG 1.3383 0.4273 1210 0
TVP23C--CDRT4 119 1 119.00 0.98 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- INCL_NON_REF_SPLICE YES 112 9 1.07 12.10 GT 1.9329 AG 1.9899 0.4068 1215 0
TVP23C--CDRT4 44 0 44.00 0.00 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- INCL_NON_REF_SPLICE YES 112 66 0.40 0.67 GT 1.9329 AG 1.6402 0.1492 137 0
TVP23C--CDRT4 36 0 36.00 0.00 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 217 9 0.17 3.70 GT 1.8323 AG 1.9899 0.1221 2126 0
TVP23C--CDRT4 21 0 21.00 0.00 TVP23C^ENSG00000175106.17 12676 chr17:15516419:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 22 9 0.96 2.20 GT 1.8892 AG 1.9899 0.0712 1949 0
TVP23C--CDRT4 7 0 7.00 0.00 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- ONLY_REF_SPLICE YES 217 66 0.04 0.12 GT 1.8323 AG 1.6402 0.0237 1363 0
TVP23C--CDRT4 3 1 3.00 0.02 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 21051 chr17:15453085:- INCL_NON_REF_SPLICE YES 112 0 0.04 5.00 GT 1.9329 AG 1.8892 0.0103 1153 0
TVP23C--CDRT4 2 0 2.00 0.00 TVP23C^ENSG00000175106.17 12676 chr17:15516419:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- ONLY_REF_SPLICE YES 22 66 0.13 0.04 GT 1.8892 AG 1.6402 0.0068 873 0
TRIM35--SCARA5 114 0 114.00 0.00 TRIM35^ENSG00000104228.13 1472 chr8:27310801:- SCARA5^ENSG00000168079.17 16772 chr8:27922245:- ONLY_REF_SPLICE YES 218 20 0.53 5.48 GT 1.8892 AG 1.8323 0.3866 263 0
TRIM35--SCARA5 4 0 4.00 0.00 TRIM35^ENSG00000104228.13 1472 chr8:27310801:- SCARA5^ENSG00000168079.17 18447 chr8:27909743:- ONLY_REF_SPLICE YES 218 102 0.02 0.05 GT 1.8892 AG 1.5058 0.0136 1470 0
STX16--NPEPL1 111 2 111.00 2.00 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 423 97 0.27 1.16 GT 1.7968 AG 1.8256 0.3832 1940 0
STX16--NPEPL1 2 0 2.00 0.00 STX16^ENSG00000124222.22 7774 chr20:58671297:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 379 97 0.01 0.03 GT 1.8062 AG 1.8256 0.0068 2729 0
STX16--NPEPL1 1 0 1.00 0.00 STX16^ENSG00000124222.22 1835 chr20:58652087:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1102 97 0.00 0.02 GT 1.9899 AG 1.8256 0.0034 1258 0
VTI1A--TCF7L2 98 0 98.00 0.00 VTI1A^ENSG00000151532.14 6899 chr10:112464657:+ TCF7L2^ENSG00000148737.17 26793 chr10:113040025:+ ONLY_REF_SPLICE YES 360 472 0.27 0.21 GT 1.9086 AG 1.8892 0.3323 3451 0
TLK2P1--AC110079.1 91 0 79.09 0.00 TLK2P1^ENSG00000226049.3 1830 chr17:34039043:- AC110079.1^ENSG00000260404.3 8316 chr4:118595912:+ INCL_NON_REF_SPLICE YES 25 28 3.54 3.17 GT 1.7465 AG 1.8892 0.2682 311 0
TLK2--AC240565.1 85 0 71.91 0.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ AC240565.1^ENSG00000280136.2 41242 chr17:106864:- ONLY_REF_SPLICE YES 343 41 0.25 2.05 GT 1.8892 AG 1.8892 0.2439 1734 0
GRK2--KDM2A 66 0 66.00 0.00 GRK2^ENSG00000173020.11 4223 chr11:67277348:+ KDM2A^ENSG00000173120.15 46158 chr11:67257484:+ INCL_NON_REF_SPLICE YES 1043 1 0.06 33.50 GT 1.9899 AG 1.8892 0.2238 76 1
KLRC4--KLRK1 51 0 51.00 0.00 KLRC4^ENSG00000183542.5 3122 chr12:10407636:- KLRK1^ENSG00000213809.9 8583 chr12:10388875:- INCL_NON_REF_SPLICE YES 18 78 2.74 0.66 GT 1.3996 AG 1.9219 0.1729 1207 0
KLRC4--KLRK1 3 0 3.00 0.00 KLRC4^ENSG00000183542.5 3122 chr12:10407636:- KLRK1^ENSG00000213809.9 7431 chr12:10390027:- INCL_NON_REF_SPLICE YES 18 7 0.21 0.50 GT 1.3996 AG 1.8323 0.0102 2359 0
KLRC4--KLRK1 3 0 3.00 0.00 KLRC4^ENSG00000183542.5 3122 chr12:10407636:- KLRK1^ENSG00000213809.9 6360 chr12:10391891:- INCL_NON_REF_SPLICE YES 18 0 0.21 4.00 GT 1.3996 AG 1.6895 0.0102 3430 0
TENT4B--RMI2 46 0 46.00 0.00 TENT4B^ENSG00000121274.14 2349 chr16:50154259:+ RMI2^ENSG00000175643.10 30478 chr16:11379822:+ ONLY_REF_SPLICE YES 85 8 0.55 5.22 GT 1.7232 AG 1.7968 0.156 1411 0
TENT4B--RMI2 7 0 7.00 0.00 TENT4B^ENSG00000121274.14 2349 chr16:50154259:+ RMI2^ENSG00000175643.10 28359 chr16:11350642:+ ONLY_REF_SPLICE YES 85 287 0.09 0.03 GT 1.7232 AG 1.5656 0.0237 1146 0
AC092807.3--DDAH1 41 1 41.00 0.93 AC092807.3^ENSG00000282057.1 5553 chr1:85496166:- DDAH1^ENSG00000153904.21 16212 chr1:85358847:- ONLY_REF_SPLICE YES 0 88 43.00 0.48 GT 1.5628 AG 1.8062 0.1422 3011 0
AC092807.3--DDAH1 7 0 7.00 0.00 AC092807.3^ENSG00000282057.1 1267 chr1:85577984:- DDAH1^ENSG00000153904.21 16212 chr1:85358847:- ONLY_REF_SPLICE YES 0 88 8.00 0.09 GT 1.8062 AG 1.8062 0.0237 2484 0
AC092807.3--DDAH1 3 1 3.00 0.07 AC092807.3^ENSG00000282057.1 9402 chr1:85488291:- DDAH1^ENSG00000153904.21 16212 chr1:85358847:- ONLY_REF_SPLICE YES 0 88 5.00 0.06 GT 1.8892 AG 1.8062 0.0104 2892 0
AC092807.3--DDAH1 1 0 1.00 0.00 AC092807.3^ENSG00000282057.1 3294 chr1:85575832:- DDAH1^ENSG00000153904.21 16212 chr1:85358847:- ONLY_REF_SPLICE YES 0 88 2.00 0.02 GT 1.6895 AG 1.8062 0.0034 3244 0
ANO2--NOP2 33 0 33.00 0.00 ANO2^ENSG00000047617.15 4549 chr12:5921040:- NOP2^ENSG00000111641.12 54126 chr12:6557642:- ONLY_REF_SPLICE YES 64 221 0.52 0.15 GT 1.6895 AG 1.8295 0.1119 464 0
ETV6--AC008014.1 31 0 31.00 0.00 ETV6^ENSG00000139083.11 1487 chr12:11650160:+ AC008014.1^ENSG00000257261.6 31901 chr12:46874817:+ ONLY_REF_SPLICE YES 2343 0 0.01 32.00 GT 1.9329 AG 1.9329 0.1051 474 0
ETV6--AC008014.1 27 0 27.00 0.00 ETV6^ENSG00000139083.11 1487 chr12:11650160:+ AC008014.1^ENSG00000257261.6 33659 chr12:46876575:+ INCL_NON_REF_SPLICE YES 2343 0 0.01 28.00 GT 1.9329 AG 1.9329 0.0916 1276 0
NR6A1--SCAI 23 0 23.00 0.00 NR6A1^ENSG00000148200.17 4637 chr9:124554328:- SCAI^ENSG00000173611.18 25602 chr9:125029739:- ONLY_REF_SPLICE YES 44 68 0.53 0.35 GT 1.6895 AG 1.8892 0.078 5184 0
NR6A1--SCAI 1 0 1.00 0.00 NR6A1^ENSG00000148200.17 2334 chr9:124733308:- SCAI^ENSG00000173611.18 31508 chr9:125003570:- ONLY_REF_SPLICE YES 63 75 0.03 0.03 GT 1.9656 AG 1.8256 0.0034 4613 0
MROH1--AL021392.1 21 0 21.00 0.00 MROH1^ENSG00000179832.17 5212 chr8:144168440:+ AL021392.1^ENSG00000234869.1 43690 chr22:46546688:+ ONLY_REF_SPLICE YES 1345 0 0.02 22.00 GT 1.8256 AG 1.7232 0.0712 927 0
ATG5--AC004083.1 19 0 19.00 0.00 ATG5^ENSG00000057663.16 7147 chr6:106248150:- AC004083.1^ENSG00000254180.2 32445 chr8:90201050:- ONLY_REF_SPLICE YES 154 0 0.13 20.00 GT 1.7056 AG 1.2729 0.0644 1088 0
GRAMD4--WDR97 19 0 19.00 0.00 GRAMD4^ENSG00000075240.17 2229 chr22:46577290:+ WDR97^ENSG00000179698.14 34193 chr8:144115943:+ ONLY_REF_SPLICE YES 66 209 0.30 0.10 GT 1.9656 AG 1.6729 0.0644 319 0
PABPC1L--CCN5 10 0 10.00 0.00 PABPC1L^ENSG00000101104.13 16033 chr20:44938748:+ CCN5^ENSG00000064205.11 28922 chr20:44727087:+ ONLY_REF_SPLICE YES 803 160 0.01 0.07 GT 1.8892 AG 1.9086 0.0339 323 0
PABPC1L--CCN5 7 0 7.00 0.00 PABPC1L^ENSG00000101104.13 15476 chr20:44938191:+ CCN5^ENSG00000064205.11 28922 chr20:44727087:+ ONLY_REF_SPLICE YES 1234 160 0.01 0.05 GT 1.8295 AG 1.9086 0.0237 440 0
PABPC1L--CCN5 2 0 2.00 0.00 PABPC1L^ENSG00000101104.13 17664 chr20:44952704:+ CCN5^ENSG00000064205.11 28922 chr20:44727087:+ ONLY_REF_SPLICE YES 60 160 0.05 0.02 GT 1.9219 AG 1.9086 0.0068 1707 0
SCAMP3--PLD5 9 1 9.00 0.60 SCAMP3^ENSG00000116521.11 1345 chr1:155262086:- PLD5^ENSG00000180287.17 12684 chr1:242348242:- ONLY_REF_SPLICE YES 881 9 0.01 1.10 GT 1.8892 AG 1.9329 0.0325 1140 0
SCAMP3--PLD5 5 2 5.00 1.40 SCAMP3^ENSG00000116521.11 3101 chr1:155260330:- PLD5^ENSG00000180287.17 12684 chr1:242348242:- ONLY_REF_SPLICE YES 325 9 0.02 0.80 GT 1.8295 AG 1.9329 0.0217 1590 0
RPL14--SMARCA2 4 0 4.00 0.00 RPL14^ENSG00000188846.14 4476 chr3:40462017:+ SMARCA2^ENSG00000080503.24 24504 chr9:2039813:+ INCL_NON_REF_SPLICE YES 1208 1720 0.00 0.00 GT 1.6895 AG 1.5656 0.0136 325 0
RPL14--SMARCA2 4 0 4.00 0.00 RPL14^ENSG00000188846.14 4439 chr3:40461980:+ SMARCA2^ENSG00000080503.24 24494 chr9:2039803:+ INCL_NON_REF_SPLICE YES 1592 1713 0.00 0.00 GC 1.7232 CA 1.5850 0.0136 335 0
RPL14--SMARCA2 3 0 3.00 0.00 RPL14^ENSG00000188846.14 4476 chr3:40462017:+ SMARCA2^ENSG00000080503.24 24501 chr9:2039810:+ INCL_NON_REF_SPLICE YES 1208 1714 0.00 0.00 GT 1.6895 AG 1.5656 0.0102 328 0
SASH1--AL589693.1 2 0 2.00 0.00 SASH1^ENSG00000111961.18 4813 chr6:148440407:+ AL589693.1^ENSG00000287092.1 36579 chr6:156294754:- ONLY_REF_SPLICE YES 211 0 0.01 3.00 GT 1.2310 AG 1.9329 0.0068 2784 0
48 rows