File Info
- Filename
- 1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1.fusions.csv
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- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__73d51683--20260607-225254/fusionreport/1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1/1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1.fusions.csv
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- 9.0 KB
- Workflow Run
- dev_rna_exp0016-73d51683
- Published
- Jun 08, 2026 6:57 AM
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| TTC26--HIPK2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr7:139181198#chr7:139584064,reading-frame: out-of-frame,type: inversion,split_reads1: 47,split_reads2: 28,discordant_mates: 0,coverage1: 518,coverage2: 1312,confidence: high | position: chr7:139181198:+#chr7:139584064:-,junction_reads: 76,spanning_reads: 0,ffmp: 0.2858 | |
| POLR2F--HMGB1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr22:37986312:+#chr13:30463694:-,junction_reads: 69,spanning_reads: 0,ffmp: 0.2595 | ||
| CROT--DEFB123 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr7:87346430#chr20:31450029,reading-frame: .,type: translocation,split_reads1: 3,split_reads2: 59,discordant_mates: 2,coverage1: 91,coverage2: 330,confidence: high | position: chr7:87346430:+#chr20:31450029:+,junction_reads: 67,spanning_reads: 2,ffmp: 0.2594 | |
| POLR2F--MXI1 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr22:37986312:+#chr10:110228189:+,junction_reads: 46,spanning_reads: 0,ffmp: 0.173 | |
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 37,spanning_reads: 0,ffmp: 0.1376 | ||
| SKA2--RNFT1-DT | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:59131281#chr17:59995620,reading-frame: out-of-frame,type: inversion,split_reads1: 5,split_reads2: 16,discordant_mates: 1,coverage1: 1789,coverage2: 434,confidence: high | position: chr17:59131281:-#chr17:59995620:+,junction_reads: 26,spanning_reads: 1,ffmp: 0.1014 | |
| RPL14--MAML2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:40462017:+#chr11:96092215:-,junction_reads: 18,spanning_reads: 1,ffmp: 0.0642 | ||
| POLR2F--GNAS | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr22:37986312:+#chr20:58895612:+,junction_reads: 15,spanning_reads: 0,ffmp: 0.0564 | ||
| RPL14--ATN1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:40462017:+#chr12:6936765:+,junction_reads: 13,spanning_reads: 0,ffmp: 0.0489 | ||
| GUSBP13--NAIP | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:69920867:+#chr5:71003857:-,junction_reads: 13,spanning_reads: 0,ffmp: 0.0163 | ||
| TCEAL4--MTRNR2L12 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chrX:103586848:+#chr3:96617452:-,junction_reads: 10,spanning_reads: 0,ffmp: 0.0188 | ||
| RPL14--EP400 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:40462017:+#chr12:132062582:+,junction_reads: 10,spanning_reads: 0,ffmp: 0.034 | ||
| TAS2R14--PRR4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:11034782:-#chr12:10848407:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.0301 | ||
| RPL14--MPRIP | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:40462017:+#chr17:17136278:+,junction_reads: 8,spanning_reads: 0,ffmp: 0.015 | ||
| RPL14--E2F4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr3:40462017:+#chr16:67195927:+,junction_reads: 8,spanning_reads: 0,ffmp: 0.0301 | |
| AC134878.2--AK6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chrY:11212744:-#chr5:69366595:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.0301 | ||
| PCDHA6--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140830485#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 60,split_reads2: 141,discordant_mates: 0,coverage1: 588,coverage2: 2213,confidence: high | ||
| PCDHA6--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140830485#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 60,split_reads2: 141,discordant_mates: 0,coverage1: 588,coverage2: 2213,confidence: high | ||
| PCDHA6--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140830485#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 60,split_reads2: 141,discordant_mates: 0,coverage1: 588,coverage2: 2213,confidence: high | ||
| PCDHGB2--PCDHGC5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 131,split_reads2: 45,discordant_mates: 0,coverage1: 1183,coverage2: 11286,confidence: high | ||
| PCDHGB2--PCDHGC4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 131,split_reads2: 45,discordant_mates: 0,coverage1: 1183,coverage2: 11286,confidence: high | ||
| PCDHGB2--PCDHGA8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 131,split_reads2: 45,discordant_mates: 0,coverage1: 1183,coverage2: 11286,confidence: high | ||
| PCDHGB2--PCDHGA10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 131,split_reads2: 45,discordant_mates: 0,coverage1: 1183,coverage2: 11286,confidence: high | ||
| PCDHGB2--PCDHGB6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 131,split_reads2: 45,discordant_mates: 0,coverage1: 1183,coverage2: 11286,confidence: high | ||
| PCDHGB2--PCDHGC3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 131,split_reads2: 45,discordant_mates: 0,coverage1: 1183,coverage2: 11286,confidence: high | ||
| PCDHGB2--PCDHGA11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 131,split_reads2: 45,discordant_mates: 0,coverage1: 1183,coverage2: 11286,confidence: high | ||
| PCDHGB2--PCDHGA12 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 131,split_reads2: 45,discordant_mates: 0,coverage1: 1183,coverage2: 11286,confidence: high | ||
| PCDHGB2--PCDHGB7 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 131,split_reads2: 45,discordant_mates: 0,coverage1: 1183,coverage2: 11286,confidence: high | ||
| PCDHGB2--PCDHGA9 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 131,split_reads2: 45,discordant_mates: 0,coverage1: 1183,coverage2: 11286,confidence: high | ||
| WDR91--AC008163.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:135204268#chr7:81605653,reading-frame: out-of-frame,type: inversion/5'-5',split_reads1: 128,split_reads2: 16,discordant_mates: 0,coverage1: 1194,coverage2: 29,confidence: high | ||
| ARHGEF10--ARHGEF10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr8:1909470#chr8:1843353,reading-frame: in-frame,type: duplication/non-canonical_splicing,split_reads1: 30,split_reads2: 81,discordant_mates: 0,coverage1: 520,coverage2: 1896,confidence: high | ||
| DIP2C--DIP2C | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:413913#chr10:486530,reading-frame: in-frame,type: duplication/non-canonical_splicing,split_reads1: 35,split_reads2: 75,discordant_mates: 0,coverage1: 2899,coverage2: 3581,confidence: high | ||
| PCDHA11--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 48,split_reads2: 47,discordant_mates: 0,coverage1: 966,coverage2: 2213,confidence: high | ||
| PCDHA11--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 48,split_reads2: 47,discordant_mates: 0,coverage1: 966,coverage2: 2213,confidence: high | ||
| PCDHA11--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140871494#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 48,split_reads2: 47,discordant_mates: 0,coverage1: 966,coverage2: 2213,confidence: high | ||
| STX16--NPEPL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 43,split_reads2: 21,discordant_mates: 1,coverage1: 2399,coverage2: 212,confidence: high | ||
| ARNT2--ARNT2 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr15:80514405#chr15:80450880,reading-frame: in-frame,type: duplication/non-canonical_splicing,split_reads1: 23,split_reads2: 40,discordant_mates: 0,coverage1: 3843,coverage2: 4267,confidence: high | |
| DHX40--SKA2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:59579879#chr17:59137038,reading-frame: out-of-frame,type: duplication/5'-5',split_reads1: 17,split_reads2: 12,discordant_mates: 0,coverage1: 1390,coverage2: 37,confidence: high | ||
| CCDC169--SOHLH2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr13:36248606#chr13:36202093,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 4,split_reads2: 16,discordant_mates: 0,coverage1: 73,coverage2: 45,confidence: high | ||
| AC092807.3--DDAH1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:85496166#chr1:85358847,reading-frame: .,type: deletion/read-through,split_reads1: 4,split_reads2: 13,discordant_mates: 0,coverage1: 18,coverage2: 113,confidence: high | ||
| NBAS--EFEMP1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:15415546#chr2:55870752,reading-frame: out-of-frame,type: inversion/5'-5',split_reads1: 4,split_reads2: 8,discordant_mates: 0,coverage1: 1354,coverage2: 238,confidence: high |
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