File Info
- Filename
- 1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1.fusions.csv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__73d51683--20260607-225254/fusionreport/1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1/1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1.fusions.csv
- Size
- 8.3 KB
- Workflow Run
- dev_rna_exp0016-73d51683
- Published
- Jun 08, 2026 9:38 AM
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| MTAP--CDKN2B-AS1 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr9:21838010:+#chr9:22112320:+,junction_reads: 85,spanning_reads: 1,ffmp: 0.2912 | |
| CDV3--MT-RNR2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:133575115:+#chrM:2449:+,junction_reads: 55,spanning_reads: 0,ffmp: 0.1862 | ||
| B4GALT6--DSC3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr18:31684312#chr18:30994372,reading-frame: out-of-frame,type: deletion,split_reads1: 41,split_reads2: 10,discordant_mates: 0,coverage1: 1748,coverage2: 1106,confidence: high | position: chr18:31684312:-#chr18:30994372:-,junction_reads: 55,spanning_reads: 0,ffmp: 0.1862 | |
| TMEM65--ANXA13 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:124371854#chr8:123684722,reading-frame: in-frame,type: deletion,split_reads1: 29,split_reads2: 21,discordant_mates: 0,coverage1: 1410,coverage2: 138,confidence: high | position: chr8:124371854:-#chr8:123684722:-,junction_reads: 50,spanning_reads: 0,ffmp: 0.1693 | |
| TMEM123--PDGFD | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:102448812:-#chr11:104000255:-,junction_reads: 44,spanning_reads: 0,ffmp: 0.149 | ||
| PDCD1LG2--DYNC2H1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:5535050:+#chr11:103114103:+,junction_reads: 42,spanning_reads: 0,ffmp: 0.1422 | ||
| RPSAP52--HMGA2 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr12:65826843:-#chr12:65828001:+,junction_reads: 39,spanning_reads: 0,ffmp: 0.1321 | |
| CLTC--VMP1 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr17:59690711:+#chr17:59838295:+,junction_reads: 38,spanning_reads: 1,ffmp: 0.1321 | |
| AL033504.1--SASH1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr6:147947519#chr6:148390134,reading-frame: .,type: deletion,split_reads1: 10,split_reads2: 25,discordant_mates: 1,coverage1: 13,coverage2: 710,confidence: high | position: chr6:147947519:+#chr6:148390134:+,junction_reads: 35,spanning_reads: 1,ffmp: 0.1219 | |
| TBC1D13--AL442224.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr9:128792574#chr9:93825711,reading-frame: out-of-frame,type: duplication,split_reads1: 25,split_reads2: 5,discordant_mates: 0,coverage1: 869,coverage2: 7,confidence: high | position: chr9:128792574:+#chr9:93825711:+,junction_reads: 32,spanning_reads: 0,ffmp: 0.1084 | |
| BIRC3--PDGFD | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:102317571:+#chr11:104000255:-,junction_reads: 25,spanning_reads: 0,ffmp: 0.0846 | ||
| TMEM123--DYNC2H1 | Mitelman | 0.312 | 0.5 * (0.125) + 0.5 * (0.500) | position: chr11:102448812:-#chr11:103280348:+,junction_reads: 23,spanning_reads: 0,ffmp: 0.0779 | |
| COL1A1--SLC45A4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:50189867:-#chr8:141254178:-,junction_reads: 22,spanning_reads: 0,ffmp: 0.0745 | ||
| SH3BP5--AC002074.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr3:15304103#chr7:94279390,reading-frame: out-of-frame,type: translocation,split_reads1: 17,split_reads2: 2,discordant_mates: 0,coverage1: 1385,coverage2: 3,confidence: high | position: chr3:15304103:-#chr7:94279390:-,junction_reads: 20,spanning_reads: 0,ffmp: 0.0677 | |
| AC239859.5--AC013734.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:143419625:-#chrY:26453985:+,junction_reads: 20,spanning_reads: 0,ffmp: 0.012 | ||
| SRGAP2C--FCGR1B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:121324640:+#chr1:121092996:+,junction_reads: 20,spanning_reads: 1,ffmp: 0.0704 | ||
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 19,spanning_reads: 0,ffmp: 0.0643 | ||
| PTPRM--TTC39C | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr18:7567891:+#chr18:24064140:+,junction_reads: 18,spanning_reads: 0,ffmp: 0.0609 | ||
| TMEM123--PPP2R2C | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:102448812:-#chr4:6381094:-,junction_reads: 13,spanning_reads: 0,ffmp: 0.044 | ||
| TPTE--BAGE2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr21:10527412:+#chr21:10514122:+,junction_reads: 11,spanning_reads: 0,ffmp: 0.0186 | ||
| TMEFF2--TEX41 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr2:191998262#chr2:144768098,reading-frame: out-of-frame,type: inversion,split_reads1: 7,split_reads2: 1,discordant_mates: 0,coverage1: 127,coverage2: 2,confidence: high | position: chr2:191998262:-#chr2:144667969:+,junction_reads: 11,spanning_reads: 0,ffmp: 0.0372 | |
| EIF4H--COL1A2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:74195439:+#chr7:94412068:+,junction_reads: 10,spanning_reads: 0,ffmp: 0.0339 | ||
| TLK2--AC018638.8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr7:128617868:+,junction_reads: 9,spanning_reads: 0,ffmp: 0.0194 | ||
| MAP3K20--RAPGEF4 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr2:173091190#chr2:172917802,reading-frame: in-frame,type: duplication,split_reads1: 0,split_reads2: 9,discordant_mates: 1,coverage1: 909,coverage2: 113,confidence: high | position: chr2:173091190:+#chr2:172917802:+,junction_reads: 9,spanning_reads: 1,ffmp: 0.0339 | |
| TMEM123--BIRC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:102448812:-#chr11:102350844:+,junction_reads: 8,spanning_reads: 1,ffmp: 0.0296 | ||
| NUP214--AP000851.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:131130836#chr11:102657665,reading-frame: out-of-frame,type: translocation,split_reads1: 209,split_reads2: 149,discordant_mates: 5,coverage1: 1331,coverage2: 241,confidence: high | ||
| NUP214--AP000851.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:131130836#chr11:102657665,reading-frame: out-of-frame,type: translocation,split_reads1: 209,split_reads2: 149,discordant_mates: 5,coverage1: 1331,coverage2: 241,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 96,split_reads2: 165,discordant_mates: 4,coverage1: 1423,coverage2: 1097,confidence: high | |
| AC092807.3--DDAH1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:85496166#chr1:85358847,reading-frame: .,type: deletion/read-through,split_reads1: 54,split_reads2: 176,discordant_mates: 2,coverage1: 279,coverage2: 1573,confidence: high | ||
| UGDH--UGDH | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr4:39503875#chr4:39510861,reading-frame: in-frame,type: duplication/non-canonical_splicing,split_reads1: 40,split_reads2: 81,discordant_mates: 0,coverage1: 2949,coverage2: 2920,confidence: high | ||
| STX16--NPEPL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 37,split_reads2: 33,discordant_mates: 0,coverage1: 1983,coverage2: 168,confidence: high | ||
| RCC2--CPS1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:17438230#chr2:211081489,reading-frame: out-of-frame,type: translocation,split_reads1: 24,split_reads2: 39,discordant_mates: 0,coverage1: 2420,coverage2: 52,confidence: high | ||
| RCC2--AC012491.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:17438230#chr2:211081489,reading-frame: out-of-frame,type: translocation,split_reads1: 24,split_reads2: 39,discordant_mates: 0,coverage1: 2420,coverage2: 52,confidence: high | ||
| PDCD1LG2--AP001830.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:5535050#chr11:102506419,reading-frame: out-of-frame,type: translocation,split_reads1: 20,split_reads2: 7,discordant_mates: 0,coverage1: 1079,coverage2: 9,confidence: high | ||
| PDCD1LG2--MMP7 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:5535050#chr11:102506419,reading-frame: out-of-frame,type: translocation,split_reads1: 20,split_reads2: 7,discordant_mates: 0,coverage1: 1079,coverage2: 9,confidence: high | ||
| AC015911.9--SLFN12L | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:35522279#chr17:35480195,reading-frame: .,type: deletion/read-through,split_reads1: 9,split_reads2: 9,discordant_mates: 0,coverage1: 172,coverage2: 99,confidence: high | ||
| AP001347.1--ANKRD20A11P | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr21:14027597#chr21:13970110,reading-frame: .,type: inversion,split_reads1: 13,split_reads2: 1,discordant_mates: 0,coverage1: 235,coverage2: 10,confidence: high | ||
| PDGFD--MMP20 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:104001244#chr11:102579142,reading-frame: .,type: inversion/3'-3',split_reads1: 1,split_reads2: 12,discordant_mates: 0,coverage1: 3,coverage2: 105,confidence: high | ||
| AC244669.1--SEC22B3P | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:120340756#chr1:148779001,reading-frame: .,type: duplication,split_reads1: 4,split_reads2: 6,discordant_mates: 0,coverage1: 581,coverage2: 475,confidence: high |
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