Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/c9502631f4eda69bc49a9f8aa7ce04/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/c9502631f4eda69bc49a9f8aa7ce04/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/79271e97b1eaf9b226ab03289fcf44/FFPE_V4_0002_RNA_0001_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/8a7d33286577814638e7e5cd03b512/FFPE_V4_0002_RNA_0001_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory