File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/2483f7b879f650ad16f06864240b80/.command.log
Size
2.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (1173_C31_T1_RNA_SLD_01_A23T55JLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/c50dde31c41b2fa000cf66f79180b1/1173_C31_T1_RNA_SLD_01_A23T55JLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/45/503758169673f6b79761b4db9d3b84/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/2483f7b879f650ad16f06864240b80/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/2483f7b879f650ad16f06864240b80/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/9ce4e903c00d8bc8452c57073af4f3/1173_C31_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
COL1A1--SLC45A4
starfusion
TLK2P1--AC110079.1
starfusion
CABLES1--ABHD3
starfusion
arriba
STX16--NPEPL1
starfusion
arriba
TVP23C--CDRT4
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba

  0%|          | 0/8 [00:00<?, ?it/s]
Processing COL1A1--SLC45A4:   0%|          | 0/8 [00:00<?, ?it/s]
Processing COL1A1--SLC45A4:  12%|█▎        | 1/8 [00:00<00:00,  9.20it/s]
Processing TLK2P1--AC110079.1:  12%|█▎        | 1/8 [00:00<00:00,  9.20it/s]
Processing TLK2P1--AC110079.1:  25%|██▌       | 2/8 [00:00<00:00,  9.38it/s]
Processing CABLES1--ABHD3:  25%|██▌       | 2/8 [00:00<00:00,  9.38it/s]    
Processing CABLES1--ABHD3:  38%|███▊      | 3/8 [00:00<00:00,  9.38it/s]
Processing STX16--NPEPL1:  38%|███▊      | 3/8 [00:00<00:00,  9.38it/s] 
Processing STX16--NPEPL1:  50%|█████     | 4/8 [00:00<00:00,  9.41it/s]
Processing TVP23C--CDRT4:  50%|█████     | 4/8 [00:00<00:00,  9.41it/s]
Processing TVP23C--CDRT4:  62%|██████▎   | 5/8 [00:00<00:00,  9.43it/s]
Processing PCDHA4--PCDHAC2:  62%|██████▎   | 5/8 [00:00<00:00,  9.43it/s]
Processing PCDHA4--PCDHAC2:  75%|███████▌  | 6/8 [00:00<00:00,  9.44it/s]
Processing PCDHA4--PCDHAC1:  75%|███████▌  | 6/8 [00:00<00:00,  9.44it/s]
Processing PCDHA4--PCDHAC1:  88%|████████▊ | 7/8 [00:00<00:00,  9.45it/s]
Processing PCDHA4--PCDHA13:  88%|████████▊ | 7/8 [00:00<00:00,  9.45it/s]
Processing PCDHA4--PCDHA13: 100%|██████████| 8/8 [00:00<00:00,  9.45it/s]
Processing PCDHA4--PCDHA13: 100%|██████████| 8/8 [00:00<00:00,  9.42it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory