Done.
-parsing GTF file: /tmp/nxf.dkJEPjqjJR/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.gtf
* Running CMD: /usr/local/bin/STAR --runThreadN 8 --genomeDir /tmp/nxf.dkJEPjqjJR/ctat_genome_lib_build_dir/ref_genome.fa.star.idx --outSAMtype BAM SortedByCoordinate --twopassMode None --alignSJDBoverhangMin 10 --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705 --alignInsertionFlush Right --alignMatesGapMax 100000 --alignIntronMax 100000 --outSAMattributes All --readFilesIn /tmp/nxf.dkJEPjqjJR/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz /tmp/nxf.dkJEPjqjJR/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1_2.fastp.fastq.gz --genomeFastaFiles /tmp/nxf.dkJEPjqjJR/fi_workdir/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.fa --outSAMfilter KeepAllAddedReferences --sjdbGTFfile /tmp/nxf.dkJEPjqjJR/fi_workdir/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.gtf --alignSJstitchMismatchNmax 5 -1 5 5 --scoreGapNoncan -6 --readFilesCommand 'gunzip -c'
* Running CMD: mv Aligned.sortedByCoord.out.bam 1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.star.sortedByCoord.out.bam
* Running CMD: samtools index 1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.star.sortedByCoord.out.bam
11:46:21 : INFO : Done.
-parsing GTF file: /tmp/nxf.dkJEPjqjJR/fi_workdir/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.gtf
-parsing /tmp/nxf.dkJEPjqjJR/fi_workdir/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam
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[17430000] -done parsing /tmp/nxf.dkJEPjqjJR/fi_workdir/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam. Extracting junction info.
junction read elimination tally: $VAR1 = {
'num_hits: 8 != num_counted_on_fusion_contigs 4 ' => 28,
'num_hits: 9 != num_counted_on_fusion_contigs 8 ' => 16,
'num_hits: 7 != num_counted_on_fusion_contigs 4 ' => 68,
'num_hits: 6 != num_counted_on_fusion_contigs 1 ' => 27,
'num_hits: 8 != num_counted_on_fusion_contigs 3 ' => 3,
'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 48396,
'excessive soft clipping' => 98386,
' ** passed ** ' => 42136,
'num_hits: 5 != num_counted_on_fusion_contigs 2 ' => 4930,
'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 318283,
'low complexity anchor region' => 39,
'num_hits: 5 != num_counted_on_fusion_contigs 3 ' => 6351,
'exons hit < 2' => 2,
'num_hits: 10 != num_counted_on_fusion_contigs 6 ' => 18,
'num_hits: 6 != num_counted_on_fusion_contigs 5 ' => 625,
'num_hits: 8 != num_counted_on_fusion_contigs 2 ' => 2,
'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 1222,
'num_hits: 10 != num_counted_on_fusion_contigs 3 ' => 6,
'num genes matched < 2' => 390,
'num_hits: 7 != num_counted_on_fusion_contigs 6 ' => 162,
'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 30356,
'num_hits: 7 != num_counted_on_fusion_contigs 1 ' => 4,
'num_hits: 6 != num_counted_on_fusion_contigs 4 ' => 556,
'num_hits: 9 != num_counted_on_fusion_contigs 5 ' => 10,
'num_hits: 9 != num_counted_on_fusion_contigs 4 ' => 20,
'num_hits: 8 != num_counted_on_fusion_contigs 7 ' => 77,
'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 15606,
'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 11037,
'num_hits: 9 != num_counted_on_fusion_contigs 6 ' => 18,
'num_hits: 9 != num_counted_on_fusion_contigs 3 ' => 12,
'num_hits: 8 != num_counted_on_fusion_contigs 1 ' => 5,
'per_id < 96' => 77880,
'num_hits: 5 != num_counted_on_fusion_contigs 4 ' => 14476,
'num_hits: 9 != num_counted_on_fusion_contigs 2 ' => 2,
'num_hits: 10 != num_counted_on_fusion_contigs 5 ' => 5,
'num_hits: 6 != num_counted_on_fusion_contigs 3 ' => 654,
'small anchor length' => 597,
'num_hits: 6 != num_counted_on_fusion_contigs 2 ' => 288,
'num_hits: 8 != num_counted_on_fusion_contigs 6 ' => 30,
'num_hits: 5 != num_counted_on_fusion_contigs 1 ' => 11170,
'seq-similar region overlap' => 5,
'num_hits: 7 != num_counted_on_fusion_contigs 2 ' => 20,
'num_hits: 7 != num_counted_on_fusion_contigs 3 ' => 42,
'num_hits: 7 != num_counted_on_fusion_contigs 5 ' => 110
};
-writing fusion junction support info.
-outputting the spanning read info: /tmp/nxf.dkJEPjqjJR/fi_workdir/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info.
- counting read alignments among fusion contigs.
[1000] -fusion SPANNING read extraction for scaff: AC090572.2--CNBD1
[1000]
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[19000] -fusion SPANNING read extraction for scaff: BMS1P7--AGAP13P
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[5017000] -fusion SPANNING read extraction for scaff: COL1A1--SLC45A4
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[26000] -fusion SPANNING read extraction for scaff: FBXO25--AL669831.1
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[44000] -fusion SPANNING read extraction for scaff: GOLGA6L10--GOLGA2P6
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[6075000] -fusion SPANNING read extraction for scaff: MYB--NFIB
[1000]
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[41000]
[42000] -fusion SPANNING read extraction for scaff: PCDHA4--PCDHAC2
[1000]
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[47000] -fusion SPANNING read extraction for scaff: PCDHA4--PCDHAC1
[1000]
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[53000] -fusion SPANNING read extraction for scaff: PCDHA4--PCDHA13
[1000]
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[79000] -fusion SPANNING read extraction for scaff: PCDHA6--PCDHA13
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[74000] -fusion SPANNING read extraction for scaff: PCDHA6--PCDHAC1
[1000]
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[68000] -fusion SPANNING read extraction for scaff: PCDHA6--PCDHAC2
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[17000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC4
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[19000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC5
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[27000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB6
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[50000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA8
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[31000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC3
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[25000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB7
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[30000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA9
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[41000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA11
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[35000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA12
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[43000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA10
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[5305000] -fusion SPANNING read extraction for scaff: PRB3--MTRNR2L12
[1000]
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[113000] -fusion SPANNING read extraction for scaff: STX16--NPEPL1
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[70000] -fusion SPANNING read extraction for scaff: TLK2--AC240565.1
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[23000] -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1
[1000]
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[50000] -fusion SPANNING read extraction for scaff: TVP23C--CDRT4
-filtered reads reasons: $VAR1 = {
'seq similar region alignment' => 28512,
'lacks exon overlap' => 9538
};
EM: Starting log likelihood: -16366.880708
EM: Round [1] log likelihood: -16364.488195
EM: Round [2] log likelihood: -16364.163584
EM: Round [3] log likelihood: -16364.082508
EM: Round [4] log likelihood: -16364.051697
EM: Round [5] log likelihood: -16364.035801
EM: Round [6] log likelihood: -16364.025411
EM: Round [7] log likelihood: -16364.017369
EM: Round [8] log likelihood: -16364.010426
EM: Round [9] log likelihood: -16364.004029
EM: Round [10] log likelihood: -16363.997920
EM: Round [11] log likelihood: -16363.991972
EM: Round [12] log likelihood: -16363.986123
EM: Round [13] log likelihood: -16363.980343
EM: Round [14] log likelihood: -16363.974614
EM: Round [15] log likelihood: -16363.968929
EM: Round [16] log likelihood: -16363.963284
EM: Round [17] log likelihood: -16363.957677
EM: Round [18] log likelihood: -16363.952106
EM: Round [19] log likelihood: -16363.946570
EM: Round [20] log likelihood: -16363.941068
EM: Round [21] log likelihood: -16363.935600
EM: Round [22] log likelihood: -16363.930166
EM: Round [23] log likelihood: -16363.924766
EM: Round [24] log likelihood: -16363.919398
EM: Round [25] log likelihood: -16363.914062
EM: Round [26] log likelihood: -16363.908759
EM: Round [27] log likelihood: -16363.903487
EM: Round [28] log likelihood: -16363.898246
EM: Round [29] log likelihood: -16363.893036
EM: Round [30] log likelihood: -16363.887857
EM: Round [31] log likelihood: -16363.882709
EM: Round [32] log likelihood: -16363.877590
EM: Round [33] log likelihood: -16363.872500
EM: Round [34] log likelihood: -16363.867441
EM: Round [35] log likelihood: -16363.862410
EM: Round [36] log likelihood: -16363.857407
EM: Round [37] log likelihood: -16363.852434
EM: Round [38] log likelihood: -16363.847488
EM: Round [39] log likelihood: -16363.842570
EM: Round [40] log likelihood: -16363.837679
EM: Round [41] log likelihood: -16363.832816
EM: Round [42] log likelihood: -16363.827979
EM: Round [43] log likelihood: -16363.823170
EM: Round [44] log likelihood: -16363.818386
EM: Round [45] log likelihood: -16363.813629
EM: Round [46] log likelihood: -16363.808897
EM: Round [47] log likelihood: -16363.804191
EM: Round [48] log likelihood: -16363.799511
EM: Round [49] log likelihood: -16363.794855
EM: Round [50] log likelihood: -16363.790224
EM: Round [51] log likelihood: -16363.785618
EM: Round [52] log likelihood: -16363.781036
EM: Round [53] log likelihood: -16363.776479
EM: Round [54] log likelihood: -16363.771945
EM: Round [55] log likelihood: -16363.767434
EM: Round [56] log likelihood: -16363.762947
EM: Round [57] log likelihood: -16363.758483
EM: Round [58] log likelihood: -16363.754043
EM: Round [59] log likelihood: -16363.749624
EM: Round [60] log likelihood: -16363.745229
EM: Round [61] log likelihood: -16363.740855
EM: Round [62] log likelihood: -16363.736504
EM: Round [63] log likelihood: -16363.732175
EM: Round [64] log likelihood: -16363.727867
EM: Round [65] log likelihood: -16363.723581
EM: Round [66] log likelihood: -16363.719316
EM: Round [67] log likelihood: -16363.715072
EM: Round [68] log likelihood: -16363.710849
EM: Round [69] log likelihood: -16363.706647
EM: Round [70] log likelihood: -16363.702465
EM: Round [71] log likelihood: -16363.698303
EM: Round [72] log likelihood: -16363.694162
EM: Round [73] log likelihood: -16363.690040
EM: Round [74] log likelihood: -16363.685939
EM: Round [75] log likelihood: -16363.681857
EM: Round [76] log likelihood: -16363.677794
EM: Round [77] log likelihood: -16363.673751
EM: Round [78] log likelihood: -16363.669727
EM: Round [79] log likelihood: -16363.665721
EM: Round [80] log likelihood: -16363.661735
EM: Round [81] log likelihood: -16363.657767
EM: Round [82] log likelihood: -16363.653817
EM: Round [83] log likelihood: -16363.649886
EM: Round [84] log likelihood: -16363.645973
EM: Round [85] log likelihood: -16363.642078
EM: Round [86] log likelihood: -16363.638201
EM: Round [87] log likelihood: -16363.634341
EM: Round [88] log likelihood: -16363.630499
EM: Round [89] log likelihood: -16363.626674
EM: Round [90] log likelihood: -16363.622867
EM: Round [91] log likelihood: -16363.619076
EM: Round [92] log likelihood: -16363.615303
EM: Round [93] log likelihood: -16363.611546
EM: Round [94] log likelihood: -16363.607806
EM: Round [95] log likelihood: -16363.604083
EM: Round [96] log likelihood: -16363.600376
EM: Round [97] log likelihood: -16363.596685
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[bam_sort_core] merging from 0 files and 8 in-memory blocks...
-extracting read coordinates from /tmp/nxf.dkJEPjqjJR/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam into /tmp/nxf.dkJEPjqjJR/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam.read_coords
CMD: touch /tmp/nxf.dkJEPjqjJR/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.dkJEPjqjJR/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam.read_coords > /tmp/nxf.dkJEPjqjJR/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.dkJEPjqjJR/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam.frag_coords > /tmp/nxf.dkJEPjqjJR/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam.frag_coords.coord_sorted
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.dkJEPjqjJR/fi_workdir/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.dkJEPjqjJR/fi_workdir/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: cp /tmp/nxf.dkJEPjqjJR/fi_workdir/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.dkJEPjqjJR/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter
-done, see /tmp/nxf.dkJEPjqjJR/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass
EM: Starting log likelihood: -11068.564366
EM: Round [1] log likelihood: -11067.213459
EM: Round [2] log likelihood: -11067.135328
EM: Round [3] log likelihood: -11067.126607
EM: Round [4] log likelihood: -11067.121623
EM: Round [5] log likelihood: -11067.116862
EM: Round [6] log likelihood: -11067.112136
EM: Round [7] log likelihood: -11067.107437
EM: Round [8] log likelihood: -11067.102763
EM: Round [9] log likelihood: -11067.098115
EM: Round [10] log likelihood: -11067.093491
EM: Round [11] log likelihood: -11067.088891
EM: Round [12] log likelihood: -11067.084316
EM: Round [13] log likelihood: -11067.079764
EM: Round [14] log likelihood: -11067.075237
EM: Round [15] log likelihood: -11067.070733
EM: Round [16] log likelihood: -11067.066252
EM: Round [17] log likelihood: -11067.061794
EM: Round [18] log likelihood: -11067.057360
EM: Round [19] log likelihood: -11067.052948
EM: Round [20] log likelihood: -11067.048558
EM: Round [21] log likelihood: -11067.044191
EM: Round [22] log likelihood: -11067.039845
EM: Round [23] log likelihood: -11067.035522
EM: Round [24] log likelihood: -11067.031220
EM: Round [25] log likelihood: -11067.026939
EM: Round [26] log likelihood: -11067.022680
EM: Round [27] log likelihood: -11067.018442
EM: Round [28] log likelihood: -11067.014224
EM: Round [29] log likelihood: -11067.010028
EM: Round [30] log likelihood: -11067.005851
EM: Round [31] log likelihood: -11067.001695
EM: Round [32] log likelihood: -11066.997559
EM: Round [33] log likelihood: -11066.993443
EM: Round [34] log likelihood: -11066.989347
EM: Round [35] log likelihood: -11066.985270
EM: Round [36] log likelihood: -11066.981213
EM: Round [37] log likelihood: -11066.977175
EM: Round [38] log likelihood: -11066.973156
EM: Round [39] log likelihood: -11066.969155
EM: Round [40] log likelihood: -11066.965174
EM: Round [41] log likelihood: -11066.961211
EM: Round [42] log likelihood: -11066.957266
EM: Round [43] log likelihood: -11066.953340
EM: Round [44] log likelihood: -11066.949432
EM: Round [45] log likelihood: -11066.945542
EM: Round [46] log likelihood: -11066.941669
EM: Round [47] log likelihood: -11066.937814
EM: Round [48] log likelihood: -11066.933977
EM: Round [49] log likelihood: -11066.930157
EM: Round [50] log likelihood: -11066.926354
EM: Round [51] log likelihood: -11066.922568
EM: Round [52] log likelihood: -11066.918799
EM: Round [53] log likelihood: -11066.915047
EM: Round [54] log likelihood: -11066.911312
EM: Round [55] log likelihood: -11066.907593
EM: Round [56] log likelihood: -11066.903890
EM: Round [57] log likelihood: -11066.900204
EM: Round [58] log likelihood: -11066.896533
EM: Round [59] log likelihood: -11066.892879
EM: Round [60] log likelihood: -11066.889240
EM: Round [61] log likelihood: -11066.885618
EM: Round [62] log likelihood: -11066.882011
EM: Round [63] log likelihood: -11066.878419
EM: Round [64] log likelihood: -11066.874843
EM: Round [65] log likelihood: -11066.871281
EM: Round [66] log likelihood: -11066.867736
EM: Round [67] log likelihood: -11066.864205
EM: Round [68] log likelihood: -11066.860688
EM: Round [69] log likelihood: -11066.857187
EM: Round [70] log likelihood: -11066.853700
EM: Round [71] log likelihood: -11066.850228
EM: Round [72] log likelihood: -11066.846771
EM: Round [73] log likelihood: -11066.843327
EM: Round [74] log likelihood: -11066.839898
EM: Round [75] log likelihood: -11066.836483
EM: Round [76] log likelihood: -11066.833082
EM: Round [77] log likelihood: -11066.829695
EM: Round [78] log likelihood: -11066.826321
EM: Round [79] log likelihood: -11066.822961
EM: Round [80] log likelihood: -11066.819615
EM: Round [81] log likelihood: -11066.816283
EM: Round [82] log likelihood: -11066.812963
EM: Round [83] log likelihood: -11066.809658
EM: Round [84] log likelihood: -11066.806365
EM: Round [85] log likelihood: -11066.803085
EM: Round [86] log likelihood: -11066.799818
EM: Round [87] log likelihood: -11066.796565
EM: Round [88] log likelihood: -11066.793324
EM: Round [89] log likelihood: -11066.790096
EM: Round [90] log likelihood: -11066.786880
EM: Round [91] log likelihood: -11066.783677
EM: Round [92] log likelihood: -11066.780486
EM: Round [93] log likelihood: -11066.777308
EM: Round [94] log likelihood: -11066.774142
EM: Round [95] log likelihood: -11066.770989
EM: Round [96] log likelihood: -11066.767847
EM: Round [97] log likelihood: -11066.764717
EM: Round [98] log likelihood: -11066.761600
EM: Round [99] log likelihood: -11066.758494
EM: Round [100] log likelihood: -11066.755400
EM: Round [101] log likelihood: -11066.752318
EM: Round [102] log likelihood: -11066.749247
EM: Round [103] log likelihood: -11066.746188
EM: Round [104] log likelihood: -11066.743140
EM: Round [105] log likelihood: -11066.740104
EM: Round [106] log likelihood: -11066.737079
EM: Round [107] log likelihood: -11066.734065
EM: Round [108] log likelihood: -11066.731062
EM: Round [109] log likelihood: -11066.728071
EM: Round [110] log likelihood: -11066.725090
EM: Round [111] log likelihood: -11066.722121
EM: Round [112] log likelihood: -11066.719162
EM: Round [113] log likelihood: -11066.716214
EM: Round [114] log likelihood: -11066.713277
EM: Round [115] log likelihood: -11066.710350
EM: Round [116] log likelihood: -11066.707434
EM: Round [117] log likelihood: -11066.704528
EM: Round [118] log likelihood: -11066.701633
EM: Round [119] log likelihood: -11066.698749
EM: Round [120] log likelihood: -11066.695874
EM: Round [121] log likelihood: -11066.693010
EM: Round [122] log likelihood: -11066.690156
EM: Round [123] log likelihood: -11066.687312
EM: Round [124] log likelihood: -11066.684478
EM: Round [125] log likelihood: -11066.681655
EM: Round [126] log likelihood: -11066.678841
EM: Round [127] log likelihood: -11066.676037
EM: Round [128] log likelihood: -11066.673242
EM: Round [129] log likelihood: -11066.670458
EM: Round [130] log likelihood: -11066.667683
EM: Round [131] log likelihood: -11066.664918
EM: Round [132] log likelihood: -11066.662162
EM: Round [133] log likelihood: -11066.659416
EM: Round [134] log likelihood: -11066.656679
EM: Round [135] log likelihood: -11066.653951
EM: Round [136] log likelihood: -11066.651233
EM: Round [137] log likelihood: -11066.648525
EM: Round [138] log likelihood: -11066.645825
EM: Round [139] log likelihood: -11066.643134
EM: Round [140] log likelihood: -11066.640453
EM: Round [141] log likelihood: -11066.637781
EM: Round [142] log likelihood: -11066.635117
EM: Round [143] log likelihood: -11066.632463
EM: Round [144] log likelihood: -11066.629817
EM: Round [145] log likelihood: -11066.627181
EM: Round [146] log likelihood: -11066.624553
EM: Round [147] log likelihood: -11066.621933
EM: Round [148] log likelihood: -11066.619323
EM: Round [149] log likelihood: -11066.616721
EM: Round [150] log likelihood: -11066.614127
EM: Round [151] log likelihood: -11066.611543
EM: Round [152] log likelihood: -11066.608966
EM: Round [153] log likelihood: -11066.606398
EM: Round [154] log likelihood: -11066.603839
EM: Round [155] log likelihood: -11066.601287
EM: Round [156] log likelihood: -11066.598744
EM: Round [157] log likelihood: -11066.596209
EM: Round [158] log likelihood: -11066.593683
EM: Round [159] log likelihood: -11066.591164
EM: Round [160] log likelihood: -11066.588654
EM: Round [161] log likelihood: -11066.586151
EM: Round [162] log likelihood: -11066.583657
EM: Round [163] log likelihood: -11066.581170
EM: Round [164] log likelihood: -11066.578692
EM: Round [165] log likelihood: -11066.576221
EM: Round [166] log likelihood: -11066.573758
EM: Round [167] log likelihood: -11066.571303
EM: Round [168] log likelihood: -11066.568856
EM: Round [169] log likelihood: -11066.566416
EM: Round [170] log likelihood: -11066.563984
EM: Round [171] log likelihood: -11066.561559
EM: Round [172] log likelihood: -11066.559142
EM: Round [173] log likelihood: -11066.556733
EM: Round [174] log likelihood: -11066.554331
EM: Round [175] log likelihood: -11066.551936
EM: Round [176] log likelihood: -11066.549549
EM: Round [177] log likelihood: -11066.547169
EM: Round [178] log likelihood: -11066.544797
EM: Round [179] log likelihood: -11066.542432
EM: Round [180] log likelihood: -11066.540074
EM: Round [181] log likelihood: -11066.537723
EM: Round [182] log likelihood: -11066.535379
EM: Round [183] log likelihood: -11066.533043
EM: Round [184] log likelihood: -11066.530713
EM: Round [185] log likelihood: -11066.528391
EM: Round [186] log likelihood: -11066.526075
EM: Round [187] log likelihood: -11066.523767
EM: Round [188] log likelihood: -11066.521465
EM: Round [189] log likelihood: -11066.519171
EM: Round [190] log likelihood: -11066.516883
EM: Round [191] log likelihood: -11066.514602
EM: Round [192] log likelihood: -11066.512328
EM: Round [193] log likelihood: -11066.510060
EM: Round [194] log likelihood: -11066.507800
EM: Round [195] log likelihood: -11066.505546
EM: Round [196] log likelihood: -11066.503298
EM: Round [197] log likelihood: -11066.501057
EM: Round [198] log likelihood: -11066.498823
EM: Round [199] log likelihood: -11066.496595
EM: Round [200] log likelihood: -11066.494374
EM: Round [201] log likelihood: -11066.492159
EM: Round [202] log likelihood: -11066.489951
EM: Round [203] log likelihood: -11066.487749
EM: Round [204] log likelihood: -11066.485554
EM: Round [205] log likelihood: -11066.483364
EM: Round [206] log likelihood: -11066.481182
EM: Round [207] log likelihood: -11066.479005
EM: Round [208] log likelihood: -11066.476835
EM: Round [209] log likelihood: -11066.474670
EM: Round [210] log likelihood: -11066.472513
EM: Round [211] log likelihood: -11066.470361
EM: Round [212] log likelihood: -11066.468215
EM: Round [213] log likelihood: -11066.466075
EM: Round [214] log likelihood: -11066.463942
EM: Round [215] log likelihood: -11066.461814
EM: Round [216] log likelihood: -11066.459693
EM: Round [217] log likelihood: -11066.457577
EM: Round [218] log likelihood: -11066.455468
EM: Round [219] log likelihood: -11066.453364
EM: Round [220] log likelihood: -11066.451266
EM: Round [221] log likelihood: -11066.449174
EM: Round [222] log likelihood: -11066.447088
EM: Round [223] log likelihood: -11066.445008
EM: Round [224] log likelihood: -11066.442933
EM: Round [225] log likelihood: -11066.440864
EM: Round [226] log likelihood: -11066.438801
EM: Round [227] log likelihood: -11066.436744
EM: Round [228] log likelihood: -11066.434692
EM: Round [229] log likelihood: -11066.432646
EM: Round [230] log likelihood: -11066.430606
EM: Round [231] log likelihood: -11066.428571
EM: Round [232] log likelihood: -11066.426541
EM: Round [233] log likelihood: -11066.424517
EM: Round [234] log likelihood: -11066.422499
EM: Round [235] log likelihood: -11066.420486
EM: Round [236] log likelihood: -11066.418479
EM: Round [237] log likelihood: -11066.416477
EM: Round [238] log likelihood: -11066.414480
EM: Round [239] log likelihood: -11066.412489
EM: Round [240] log likelihood: -11066.410503
EM: Round [241] log likelihood: -11066.408522
EM: Round [242] log likelihood: -11066.406547
EM: Round [243] log likelihood: -11066.404577
EM: Round [244] log likelihood: -11066.402612
EM: Round [245] log likelihood: -11066.400652
EM: Round [246] log likelihood: -11066.398698
EM: Round [247] log likelihood: -11066.396749
EM: Round [248] log likelihood: -11066.394805
EM: Round [249] log likelihood: -11066.392866
EM: Round [250] log likelihood: -11066.390932
EM: Round [251] log likelihood: -11066.389003
EM: Round [252] log likelihood: -11066.387080
EM: Round [253] log likelihood: -11066.385161
EM: Round [254] log likelihood: -11066.383247
EM: Round [255] log likelihood: -11066.381339
EM: Round [256] log likelihood: -11066.379435
EM: Round [257] log likelihood: -11066.377536
EM: Round [258] log likelihood: -11066.375643
EM: Round [259] log likelihood: -11066.373754
EM: Round [260] log likelihood: -11066.371870
EM: Round [261] log likelihood: -11066.369991
EM: Round [262] log likelihood: -11066.368116
EM: Round [263] log likelihood: -11066.366247
EM: Round [264] log likelihood: -11066.364382
EM: Round [265] log likelihood: -11066.362522
EM: Round [266] log likelihood: -11066.360667
EM: Round [267] log likelihood: -11066.358816
EM: Round [268] log likelihood: -11066.356971
EM: Round [269] log likelihood: -11066.355130
EM: Round [270] log likelihood: -11066.353293
EM: Round [271] log likelihood: -11066.351461
EM: Round [272] log likelihood: -11066.349634
EM: Round [273] log likelihood: -11066.347812
EM: Round [274] log likelihood: -11066.345994
EM: Round [275] log likelihood: -11066.344180
EM: Round [276] log likelihood: -11066.342372
EM: Round [277] log likelihood: -11066.340567
EM: Round [278] log likelihood: -11066.338768
EM: Round [279] log likelihood: -11066.336972
EM: Round [280] log likelihood: -11066.335181
EM: Round [281] log likelihood: -11066.333395
EM: Round [282] log likelihood: -11066.331613
EM: Round [283] log likelihood: -11066.329836
EM: Round [284] log likelihood: -11066.328062
EM: Round [285] log likelihood: -11066.326294
EM: Round [286] log likelihood: -11066.324529
EM: Round [287] log likelihood: -11066.322769
EM: Round [288] log likelihood: -11066.321013
EM: Round [289] log likelihood: -11066.319262
EM: Round [290] log likelihood: -11066.317515
EM: Round [291] log likelihood: -11066.315772
EM: Round [292] log likelihood: -11066.314033
EM: Round [293] log likelihood: -11066.312299
EM: Round [294] log likelihood: -11066.310569
EM: Round [295] log likelihood: -11066.308843
EM: Round [296] log likelihood: -11066.307121
EM: Round [297] log likelihood: -11066.305403
EM: Round [298] log likelihood: -11066.303689
EM: Round [299] log likelihood: -11066.301980
EM: Round [300] log likelihood: -11066.300275
EM: Round [301] log likelihood: -11066.298574
EM: Round [302] log likelihood: -11066.296876
EM: Round [303] log likelihood: -11066.295183
EM: Round [304] log likelihood: -11066.293494
EM: Round [305] log likelihood: -11066.291809
EM: Round [306] log likelihood: -11066.290128
EM: Round [307] log likelihood: -11066.288451
EM: Round [308] log likelihood: -11066.286778
EM: Round [309] log likelihood: -11066.285109
EM: Round [310] log likelihood: -11066.283444
EM: Round [311] log likelihood: -11066.281783
EM: Round [312] log likelihood: -11066.280126
EM: Round [313] log likelihood: -11066.278472
EM: Round [314] log likelihood: -11066.276823
EM: Round [315] log likelihood: -11066.275177
EM: Round [316] log likelihood: -11066.273535
EM: Round [317] log likelihood: -11066.271897
EM: Round [318] log likelihood: -11066.270263
EM: Round [319] log likelihood: -11066.268633
EM: Round [320] log likelihood: -11066.267007
EM: Round [321] log likelihood: -11066.265384
EM: Round [322] log likelihood: -11066.263765
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EM: Round [324] log likelihood: -11066.260538
EM: Round [325] log likelihood: -11066.258930
EM: Round [326] log likelihood: -11066.257326
EM: Round [327] log likelihood: -11066.255726
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EM: Round [329] log likelihood: -11066.252536
EM: Round [330] log likelihood: -11066.250947
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EM: Round [332] log likelihood: -11066.247779
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EM: Round [334] log likelihood: -11066.244625
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EM: Round [369] log likelihood: -11066.191660
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EM: Round [371] log likelihood: -11066.188754
EM: Round [372] log likelihood: -11066.187306
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EM: Round [385] log likelihood: -11066.168759
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EM: Round [408] log likelihood: -11066.137158
EM: Round [409] log likelihood: -11066.135818
EM: Round [410] log likelihood: -11066.134480
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EM: Round [869] log likelihood: -11065.712764
EM: Round [870] log likelihood: -11065.712129
EM: Round [871] log likelihood: -11065.711494
EM: Round [872] log likelihood: -11065.710861
EM: Round [873] log likelihood: -11065.710228
EM: Round [874] log likelihood: -11065.709596
EM: Round [875] log likelihood: -11065.708965
EM: Round [876] log likelihood: -11065.708335
EM: Round [877] log likelihood: -11065.707705
EM: Round [878] log likelihood: -11065.707077
EM: Round [879] log likelihood: -11065.706449
EM: Round [880] log likelihood: -11065.705822
EM: Round [881] log likelihood: -11065.705196
EM: Round [882] log likelihood: -11065.704571
EM: Round [883] log likelihood: -11065.703946
EM: Round [884] log likelihood: -11065.703323
EM: Round [885] log likelihood: -11065.702700
EM: Round [886] log likelihood: -11065.702078
EM: Round [887] log likelihood: -11065.701457
EM: Round [888] log likelihood: -11065.700837
EM: Round [889] log likelihood: -11065.700217
EM: Round [890] log likelihood: -11065.699599
EM: Round [891] log likelihood: -11065.698981
EM: Round [892] log likelihood: -11065.698364
EM: Round [893] log likelihood: -11065.697748
EM: Round [894] log likelihood: -11065.697132
EM: Round [895] log likelihood: -11065.696518
EM: Round [896] log likelihood: -11065.695904
EM: Round [897] log likelihood: -11065.695291
EM: Round [898] log likelihood: -11065.694679
EM: Round [899] log likelihood: -11065.694067
EM: Round [900] log likelihood: -11065.693457
EM: Round [901] log likelihood: -11065.692847
EM: Round [902] log likelihood: -11065.692238
EM: Round [903] log likelihood: -11065.691630
EM: Round [904] log likelihood: -11065.691022
EM: Round [905] log likelihood: -11065.690416
EM: Round [906] log likelihood: -11065.689810
EM: Round [907] log likelihood: -11065.689205
EM: Round [908] log likelihood: -11065.688601
EM: Round [909] log likelihood: -11065.687997
EM: Round [910] log likelihood: -11065.687395
EM: Round [911] log likelihood: -11065.686793
EM: Round [912] log likelihood: -11065.686192
EM: Round [913] log likelihood: -11065.685591
EM: Round [914] log likelihood: -11065.684992
EM: Round [915] log likelihood: -11065.684393
EM: Round [916] log likelihood: -11065.683795
EM: Round [917] log likelihood: -11065.683198
EM: Round [918] log likelihood: -11065.682601
EM: Round [919] log likelihood: -11065.682006
EM: Round [920] log likelihood: -11065.681411
EM: Round [921] log likelihood: -11065.680817
EM: Round [922] log likelihood: -11065.680224
EM: Round [923] log likelihood: -11065.679631
EM: Round [924] log likelihood: -11065.679039
EM: Round [925] log likelihood: -11065.678448
EM: Round [926] log likelihood: -11065.677858
EM: Round [927] log likelihood: -11065.677268
EM: Round [928] log likelihood: -11065.676680
EM: Round [929] log likelihood: -11065.676091
EM: Round [930] log likelihood: -11065.675504
EM: Round [931] log likelihood: -11065.674918
EM: Round [932] log likelihood: -11065.674332
EM: Round [933] log likelihood: -11065.673747
EM: Round [934] log likelihood: -11065.673163
EM: Round [935] log likelihood: -11065.672579
EM: Round [936] log likelihood: -11065.671997
EM: Round [937] log likelihood: -11065.671415
EM: Round [938] log likelihood: -11065.670833
EM: Round [939] log likelihood: -11065.670253
EM: Round [940] log likelihood: -11065.669673
EM: Round [941] log likelihood: -11065.669094
EM: Round [942] log likelihood: -11065.668516
EM: Round [943] log likelihood: -11065.667938
EM: Round [944] log likelihood: -11065.667361
EM: Round [945] log likelihood: -11065.666785
EM: Round [946] log likelihood: -11065.666210
EM: Round [947] log likelihood: -11065.665635
EM: Round [948] log likelihood: -11065.665061
EM: Round [949] log likelihood: -11065.664488
EM: Round [950] log likelihood: -11065.663916
EM: Round [951] log likelihood: -11065.663344
EM: Round [952] log likelihood: -11065.662773
EM: Round [953] log likelihood: -11065.662203
EM: Round [954] log likelihood: -11065.661633
EM: Round [955] log likelihood: -11065.661065
EM: Round [956] log likelihood: -11065.660497
EM: Round [957] log likelihood: -11065.659929
EM: Round [958] log likelihood: -11065.659363
EM: Round [959] log likelihood: -11065.658797
EM: Round [960] log likelihood: -11065.658232
EM: Round [961] log likelihood: -11065.657667
EM: Round [962] log likelihood: -11065.657103
EM: Round [963] log likelihood: -11065.656540
EM: Round [964] log likelihood: -11065.655978
EM: Round [965] log likelihood: -11065.655416
EM: Round [966] log likelihood: -11065.654855
EM: Round [967] log likelihood: -11065.654295
EM: Round [968] log likelihood: -11065.653736
EM: Round [969] log likelihood: -11065.653177
EM: Round [970] log likelihood: -11065.652619
EM: Round [971] log likelihood: -11065.652061
EM: Round [972] log likelihood: -11065.651504
EM: Round [973] log likelihood: -11065.650948
EM: Round [974] log likelihood: -11065.650393
EM: Round [975] log likelihood: -11065.649838
EM: Round [976] log likelihood: -11065.649285
EM: Round [977] log likelihood: -11065.648731
EM: Round [978] log likelihood: -11065.648179
EM: Round [979] log likelihood: -11065.647627
EM: Round [980] log likelihood: -11065.647076
EM: Round [981] log likelihood: -11065.646525
EM: Round [982] log likelihood: -11065.645975
EM: Round [983] log likelihood: -11065.645426
EM: Round [984] log likelihood: -11065.644878
EM: Round [985] log likelihood: -11065.644330
EM: Round [986] log likelihood: -11065.643783
EM: Round [987] log likelihood: -11065.643237
EM: Round [988] log likelihood: -11065.642691
EM: Round [989] log likelihood: -11065.642146
EM: Round [990] log likelihood: -11065.641602
EM: Round [991] log likelihood: -11065.641058
EM: Round [992] log likelihood: -11065.640515
EM: Round [993] log likelihood: -11065.639973
EM: Round [994] log likelihood: -11065.639431
EM: Round [995] log likelihood: -11065.638890
EM: Round [996] log likelihood: -11065.638350
EM: Round [997] log likelihood: -11065.637810
EM: Round [998] log likelihood: -11065.637271
EM: Round [999] log likelihood: -11065.636733
EM: Round [1000] log likelihood: -11065.636196
EM: Round [1001] log likelihood: -11065.635659
-total frags in /tmp/nxf.dkJEPjqjJR/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz: 282587251
Warning - not locating file: /tmp/nxf.dkJEPjqjJR/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.gmap_trinity_GG.fusions.gff3.bed
WARNING, no entry stored in dbm for [ENSG00000228327.3]
WARNING, no entry stored in dbm for [ENSG00000228327.3]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000241621.1]
WARNING, no entry stored in dbm for [ENSG00000241621.1]
WARNING, no entry stored in dbm for [ENSG00000270025.2]
WARNING, no entry stored in dbm for [ENSG00000243289.1]
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WARNING, no entry stored in dbm for [ENSG00000243289.1]
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WARNING, no entry stored in dbm for [ENSG00000243289.1]
WARNING, no entry stored in dbm for [ENSG00000253778.1]
WARNING, no entry stored in dbm for [ENSG00000253778.1]
WARNING, no entry stored in dbm for [ENSG00000253778.1]
WARNING, no entry stored in dbm for [ENSG00000253778.1]
ls: cannot access 'IGV_inputs': No such file or directory