File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/a2ac3cb18c4f8a05c8495de3625056/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:58:12
                             Started mapping on |	Jun 08 11:03:45
                                    Finished on |	Jun 08 11:45:13
       Mapping speed, Million of reads per hour |	408.89

                          Number of input reads |	282587251
                      Average input read length |	219
                                    UNIQUE READS:
                   Uniquely mapped reads number |	256719526
                        Uniquely mapped reads % |	90.85%
                          Average mapped length |	218.77
                       Number of splices: Total |	207383515
            Number of splices: Annotated (sjdb) |	203982825
                       Number of splices: GT/AG |	205049019
                       Number of splices: GC/AG |	1406401
                       Number of splices: AT/AC |	178279
               Number of splices: Non-canonical |	749816
                      Mismatch rate per base, % |	0.24%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.92
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.67
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	20312876
             % of reads mapped to multiple loci |	7.19%
        Number of reads mapped to too many loci |	1144579
             % of reads mapped to too many loci |	0.41%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	3344115
                 % of reads unmapped: too short |	1.18%
                Number of reads unmapped: other |	1066155
                     % of reads unmapped: other |	0.38%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%