Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_1.md.bam --METRICS_FILE 1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT 08:41:30.174 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so [Mon Jun 08 08:41:30 GMT 2026] MarkDuplicates --INPUT 1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_1.md.bam --METRICS_FILE 1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Mon Jun 08 08:41:30 GMT 2026] Executing as ?@nf-00d6f1958fbb2e8686869dfe78c33df4-cfbf9-ngrj6 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0 INFO 2026-06-08 08:41:30 MarkDuplicates Start of doWork freeMemory: 105494504; totalMemory: 134217728; maxMemory: 63585648640 INFO 2026-06-08 08:41:30 MarkDuplicates Reading input file and constructing read end information. INFO 2026-06-08 08:41:30 MarkDuplicates Will retain up to 230382784 data points before spilling to disk. INFO 2026-06-08 08:41:34 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,439,681 INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 3081 as yet unmatched pairs. 8 records in RAM. INFO 2026-06-08 08:41:36 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 1s. Last read position: chr1:3,628,480 INFO 2026-06-08 08:41:36 MarkDuplicates Tracking 5818 as yet unmatched pairs. 14 records in RAM. INFO 2026-06-08 08:41:38 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 2s. Last read position: chr1:8,360,994 INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 8931 as yet unmatched pairs. 55 records in RAM. INFO 2026-06-08 08:41:40 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:11,022,368 INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 11754 as yet unmatched pairs. 15 records in RAM. INFO 2026-06-08 08:41:42 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:15,718,535 INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 14624 as yet unmatched pairs. 32 records in RAM. INFO 2026-06-08 08:41:43 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:17,580,580 INFO 2026-06-08 08:41:43 MarkDuplicates Tracking 17327 as yet unmatched pairs. 71 records in RAM. INFO 2026-06-08 08:41:46 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:20,744,916 INFO 2026-06-08 08:41:46 MarkDuplicates Tracking 20081 as yet unmatched pairs. 21 records in RAM. INFO 2026-06-08 08:41:47 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:21,878,482 INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 23098 as yet unmatched pairs. 99 records in RAM. INFO 2026-06-08 08:41:49 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:23,694,782 INFO 2026-06-08 08:41:49 MarkDuplicates Tracking 26048 as yet unmatched pairs. 287 records in RAM. INFO 2026-06-08 08:41:51 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:26,574,114 INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 28338 as yet unmatched pairs. 40 records in RAM. INFO 2026-06-08 08:41:53 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:28,987,489 INFO 2026-06-08 08:41:53 MarkDuplicates Tracking 31154 as yet unmatched pairs. 68 records in RAM. INFO 2026-06-08 08:41:55 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:32,037,000 INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 33827 as yet unmatched pairs. 35 records in RAM. INFO 2026-06-08 08:41:57 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:35,192,517 INFO 2026-06-08 08:41:57 MarkDuplicates Tracking 36642 as yet unmatched pairs. 46 records in RAM. INFO 2026-06-08 08:41:59 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:39,335,865 INFO 2026-06-08 08:41:59 MarkDuplicates Tracking 39267 as yet unmatched pairs. 42 records in RAM. INFO 2026-06-08 08:42:00 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:42,697,248 INFO 2026-06-08 08:42:00 MarkDuplicates Tracking 41774 as yet unmatched pairs. 50 records in RAM. INFO 2026-06-08 08:42:02 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:44,776,086 INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 45332 as yet unmatched pairs. 691 records in RAM. INFO 2026-06-08 08:42:04 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:47,218,041 INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 47303 as yet unmatched pairs. 13 records in RAM. INFO 2026-06-08 08:42:06 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:54,609,017 INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 49972 as yet unmatched pairs. 20 records in RAM. INFO 2026-06-08 08:42:07 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:64,867,004 INFO 2026-06-08 08:42:07 MarkDuplicates Tracking 52569 as yet unmatched pairs. 49 records in RAM. INFO 2026-06-08 08:42:09 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:85,582,786 INFO 2026-06-08 08:42:09 MarkDuplicates Tracking 55444 as yet unmatched pairs. 516 records in RAM. INFO 2026-06-08 08:42:11 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:100,077,169 INFO 2026-06-08 08:42:11 MarkDuplicates Tracking 57454 as yet unmatched pairs. 13 records in RAM. INFO 2026-06-08 08:42:13 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:110,339,568 INFO 2026-06-08 08:42:13 MarkDuplicates Tracking 59963 as yet unmatched pairs. 42 records in RAM. INFO 2026-06-08 08:42:14 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:114,581,299 INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 62343 as yet unmatched pairs. 35 records in RAM. INFO 2026-06-08 08:42:16 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:119,916,649 INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 65190 as yet unmatched pairs. 317 records in RAM. INFO 2026-06-08 08:42:18 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:145,233,323 INFO 2026-06-08 08:42:18 MarkDuplicates Tracking 66837 as yet unmatched pairs. 51 records in RAM. INFO 2026-06-08 08:42:19 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:148,540,206 INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 68347 as yet unmatched pairs. 105 records in RAM. INFO 2026-06-08 08:42:20 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:149,842,457 INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 70337 as yet unmatched pairs. 571 records in RAM. INFO 2026-06-08 08:42:22 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:150,473,212 INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 71648 as yet unmatched pairs. 27 records in RAM. INFO 2026-06-08 08:42:23 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:151,326,189 INFO 2026-06-08 08:42:23 MarkDuplicates Tracking 74160 as yet unmatched pairs. 11 records in RAM. INFO 2026-06-08 08:42:25 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:153,614,896 INFO 2026-06-08 08:42:25 MarkDuplicates Tracking 76928 as yet unmatched pairs. 35 records in RAM. INFO 2026-06-08 08:42:26 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:154,170,410 INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 82248 as yet unmatched pairs. 2704 records in RAM. INFO 2026-06-08 08:42:28 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 2s. Last read position: chr1:154,465,321 INFO 2026-06-08 08:42:28 MarkDuplicates Tracking 81926 as yet unmatched pairs. 13 records in RAM. INFO 2026-06-08 08:42:30 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:155,133,730 INFO 2026-06-08 08:42:30 MarkDuplicates Tracking 85138 as yet unmatched pairs. 347 records in RAM. INFO 2026-06-08 08:42:32 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:155,614,705 INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 87143 as yet unmatched pairs. 35 records in RAM. INFO 2026-06-08 08:42:34 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:156,134,803 INFO 2026-06-08 08:42:34 MarkDuplicates Tracking 90409 as yet unmatched pairs. 346 records in RAM. INFO 2026-06-08 08:42:35 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:156,593,991 INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 92858 as yet unmatched pairs. 18 records in RAM. INFO 2026-06-08 08:42:37 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:160,211,632 INFO 2026-06-08 08:42:37 MarkDuplicates Tracking 95689 as yet unmatched pairs. 124 records in RAM. INFO 2026-06-08 08:42:39 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 2s. Last read position: chr1:161,222,434 INFO 2026-06-08 08:42:39 MarkDuplicates Tracking 100642 as yet unmatched pairs. 2418 records in RAM. INFO 2026-06-08 08:42:41 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:167,055,768 INFO 2026-06-08 08:42:41 MarkDuplicates Tracking 100474 as yet unmatched pairs. 48 records in RAM. INFO 2026-06-08 08:42:42 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:171,103,800 INFO 2026-06-08 08:42:42 MarkDuplicates Tracking 103101 as yet unmatched pairs. 24 records in RAM. INFO 2026-06-08 08:42:44 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:178,664,412 INFO 2026-06-08 08:42:44 MarkDuplicates Tracking 105519 as yet unmatched pairs. 5 records in RAM. INFO 2026-06-08 08:42:45 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:183,884,829 INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 108235 as yet unmatched pairs. 6 records in RAM. INFO 2026-06-08 08:42:47 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:186,374,918 INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 110532 as yet unmatched pairs. 146 records in RAM. INFO 2026-06-08 08:42:48 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:202,011,185 INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 113294 as yet unmatched pairs. 228 records in RAM. INFO 2026-06-08 08:42:50 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 2s. Last read position: chr1:204,438,962 INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 115647 as yet unmatched pairs. 69 records in RAM. INFO 2026-06-08 08:42:52 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:206,940,489 INFO 2026-06-08 08:42:52 MarkDuplicates Tracking 118681 as yet unmatched pairs. 476 records in RAM. INFO 2026-06-08 08:42:53 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:214,620,834 INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 120770 as yet unmatched pairs. 9 records in RAM. INFO 2026-06-08 08:42:55 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:225,848,446 INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 123391 as yet unmatched pairs. 98 records in RAM. INFO 2026-06-08 08:42:56 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:230,236,031 INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 126018 as yet unmatched pairs. 42 records in RAM. INFO 2026-06-08 08:42:57 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:236,558,389 INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 128929 as yet unmatched pairs. 9 records in RAM. INFO 2026-06-08 08:43:00 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 2s. Last read position: chr2:272,199 INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 131659 as yet unmatched pairs. 131249 records in RAM. INFO 2026-06-08 08:43:02 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr2:11,584,813 INFO 2026-06-08 08:43:02 MarkDuplicates Tracking 134298 as yet unmatched pairs. 133881 records in RAM. INFO 2026-06-08 08:43:03 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr2:21,008,043 INFO 2026-06-08 08:43:03 MarkDuplicates Tracking 137032 as yet unmatched pairs. 136609 records in RAM. INFO 2026-06-08 08:43:05 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr2:25,981,397 INFO 2026-06-08 08:43:05 MarkDuplicates Tracking 139446 as yet unmatched pairs. 139018 records in RAM. INFO 2026-06-08 08:43:07 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr2:28,244,780 INFO 2026-06-08 08:43:07 MarkDuplicates Tracking 142368 as yet unmatched pairs. 141936 records in RAM. INFO 2026-06-08 08:43:08 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,256 INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 221138 as yet unmatched pairs. 141575 records in RAM. INFO 2026-06-08 08:43:10 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264 INFO 2026-06-08 08:43:10 MarkDuplicates Tracking 431289 as yet unmatched pairs. 136206 records in RAM. INFO 2026-06-08 08:43:12 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264 INFO 2026-06-08 08:43:12 MarkDuplicates Tracking 1051360 as yet unmatched pairs. 121411 records in RAM. INFO 2026-06-08 08:43:14 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406 INFO 2026-06-08 08:43:14 MarkDuplicates Tracking 1431238 as yet unmatched pairs. 112568 records in RAM. INFO 2026-06-08 08:43:15 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-08 08:43:15 MarkDuplicates Tracking 1439653 as yet unmatched pairs. 112494 records in RAM. INFO 2026-06-08 08:43:17 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,435 INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 1545015 as yet unmatched pairs. 110345 records in RAM. INFO 2026-06-08 08:43:18 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr2:39,056,845 INFO 2026-06-08 08:43:18 MarkDuplicates Tracking 1550686 as yet unmatched pairs. 107755 records in RAM. INFO 2026-06-08 08:43:20 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:43,740,965 INFO 2026-06-08 08:43:20 MarkDuplicates Tracking 1547648 as yet unmatched pairs. 104711 records in RAM. INFO 2026-06-08 08:43:22 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr2:47,783,414 INFO 2026-06-08 08:43:22 MarkDuplicates Tracking 1544935 as yet unmatched pairs. 101998 records in RAM. INFO 2026-06-08 08:43:23 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:54,653,789 INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 1542227 as yet unmatched pairs. 99289 records in RAM. INFO 2026-06-08 08:43:25 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:61,350,675 INFO 2026-06-08 08:43:25 MarkDuplicates Tracking 1539410 as yet unmatched pairs. 96467 records in RAM. INFO 2026-06-08 08:43:27 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 2s. Last read position: chr2:69,387,107 INFO 2026-06-08 08:43:27 MarkDuplicates Tracking 1536917 as yet unmatched pairs. 93971 records in RAM. INFO 2026-06-08 08:43:29 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 2s. Last read position: chr2:73,860,073 INFO 2026-06-08 08:43:29 MarkDuplicates Tracking 1534412 as yet unmatched pairs. 91461 records in RAM. INFO 2026-06-08 08:43:31 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:84,441,430 INFO 2026-06-08 08:43:31 MarkDuplicates Tracking 1531669 as yet unmatched pairs. 88712 records in RAM. INFO 2026-06-08 08:43:33 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:86,542,263 INFO 2026-06-08 08:43:33 MarkDuplicates Tracking 1529236 as yet unmatched pairs. 86278 records in RAM. INFO 2026-06-08 08:43:35 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:96,285,213 INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 1527289 as yet unmatched pairs. 84320 records in RAM. INFO 2026-06-08 08:43:36 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:99,594,129 INFO 2026-06-08 08:43:36 MarkDuplicates Tracking 1524589 as yet unmatched pairs. 81610 records in RAM. INFO 2026-06-08 08:43:38 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:107,871,037 INFO 2026-06-08 08:43:38 MarkDuplicates Tracking 1522294 as yet unmatched pairs. 79309 records in RAM. INFO 2026-06-08 08:43:39 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:109,836,299 INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 1520524 as yet unmatched pairs. 77534 records in RAM. INFO 2026-06-08 08:43:41 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:112,421,959 INFO 2026-06-08 08:43:41 MarkDuplicates Tracking 1519373 as yet unmatched pairs. 76376 records in RAM. INFO 2026-06-08 08:43:42 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:127,048,502 INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 1517103 as yet unmatched pairs. 74101 records in RAM. INFO 2026-06-08 08:43:44 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:131,120,932 INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 1514387 as yet unmatched pairs. 71381 records in RAM. INFO 2026-06-08 08:43:45 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:151,803,212 INFO 2026-06-08 08:43:45 MarkDuplicates Tracking 1511870 as yet unmatched pairs. 68857 records in RAM. INFO 2026-06-08 08:43:47 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:163,610,990 INFO 2026-06-08 08:43:47 MarkDuplicates Tracking 1509294 as yet unmatched pairs. 66273 records in RAM. INFO 2026-06-08 08:43:48 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:172,488,015 INFO 2026-06-08 08:43:48 MarkDuplicates Tracking 1507338 as yet unmatched pairs. 64314 records in RAM. INFO 2026-06-08 08:43:50 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:178,547,632 INFO 2026-06-08 08:43:50 MarkDuplicates Tracking 1504557 as yet unmatched pairs. 61527 records in RAM. INFO 2026-06-08 08:43:52 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:188,995,045 INFO 2026-06-08 08:43:52 MarkDuplicates Tracking 1502522 as yet unmatched pairs. 59486 records in RAM. INFO 2026-06-08 08:43:53 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:189,459,406 INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 1498817 as yet unmatched pairs. 55779 records in RAM. INFO 2026-06-08 08:43:55 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:197,503,051 INFO 2026-06-08 08:43:55 MarkDuplicates Tracking 1496712 as yet unmatched pairs. 53655 records in RAM. INFO 2026-06-08 08:43:57 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:203,175,186 INFO 2026-06-08 08:43:57 MarkDuplicates Tracking 1493972 as yet unmatched pairs. 50912 records in RAM. INFO 2026-06-08 08:43:58 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:210,171,294 INFO 2026-06-08 08:43:58 MarkDuplicates Tracking 1491461 as yet unmatched pairs. 48393 records in RAM. INFO 2026-06-08 08:44:00 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:215,365,581 INFO 2026-06-08 08:44:00 MarkDuplicates Tracking 1491425 as yet unmatched pairs. 48351 records in RAM. INFO 2026-06-08 08:44:01 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,280 INFO 2026-06-08 08:44:01 MarkDuplicates Tracking 1487837 as yet unmatched pairs. 44761 records in RAM. INFO 2026-06-08 08:44:03 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:215,376,526 INFO 2026-06-08 08:44:03 MarkDuplicates Tracking 1488058 as yet unmatched pairs. 44974 records in RAM. INFO 2026-06-08 08:44:05 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:215,382,220 INFO 2026-06-08 08:44:05 MarkDuplicates Tracking 1486115 as yet unmatched pairs. 43031 records in RAM. INFO 2026-06-08 08:44:06 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:215,391,636 INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 1483830 as yet unmatched pairs. 40746 records in RAM. INFO 2026-06-08 08:44:08 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 2s. Last read position: chr2:215,404,389 INFO 2026-06-08 08:44:08 MarkDuplicates Tracking 1479007 as yet unmatched pairs. 35923 records in RAM. INFO 2026-06-08 08:44:10 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr2:215,408,185 INFO 2026-06-08 08:44:10 MarkDuplicates Tracking 1477648 as yet unmatched pairs. 34561 records in RAM. INFO 2026-06-08 08:44:12 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:215,419,254 INFO 2026-06-08 08:44:12 MarkDuplicates Tracking 1475224 as yet unmatched pairs. 32131 records in RAM. INFO 2026-06-08 08:44:14 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:215,425,223 INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 1470992 as yet unmatched pairs. 27886 records in RAM. INFO 2026-06-08 08:44:15 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:215,433,388 INFO 2026-06-08 08:44:15 MarkDuplicates Tracking 1469731 as yet unmatched pairs. 26624 records in RAM. INFO 2026-06-08 08:44:17 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:216,694,595 INFO 2026-06-08 08:44:17 MarkDuplicates Tracking 1464519 as yet unmatched pairs. 21403 records in RAM. INFO 2026-06-08 08:44:18 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:218,434,537 INFO 2026-06-08 08:44:18 MarkDuplicates Tracking 1461725 as yet unmatched pairs. 18607 records in RAM. INFO 2026-06-08 08:44:20 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:219,540,212 INFO 2026-06-08 08:44:20 MarkDuplicates Tracking 1458985 as yet unmatched pairs. 15866 records in RAM. INFO 2026-06-08 08:44:22 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:230,875,682 INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 1456658 as yet unmatched pairs. 13436 records in RAM. INFO 2026-06-08 08:44:23 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:231,712,503 INFO 2026-06-08 08:44:23 MarkDuplicates Tracking 1454454 as yet unmatched pairs. 11227 records in RAM. INFO 2026-06-08 08:44:25 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:237,336,240 INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 1451741 as yet unmatched pairs. 8507 records in RAM. INFO 2026-06-08 08:44:26 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:237,540,864 INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 1448578 as yet unmatched pairs. 5343 records in RAM. INFO 2026-06-08 08:44:28 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:241,182,742 INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 1445527 as yet unmatched pairs. 2285 records in RAM. INFO 2026-06-08 08:44:30 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 2s. Last read position: chr3:4,983,376 INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 1442681 as yet unmatched pairs. 67478 records in RAM. INFO 2026-06-08 08:44:32 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr3:12,590,821 INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 1440090 as yet unmatched pairs. 64876 records in RAM. INFO 2026-06-08 08:44:35 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 2s. Last read position: chr3:16,377,751 INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 1437208 as yet unmatched pairs. 61992 records in RAM. INFO 2026-06-08 08:44:36 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr3:37,016,741 INFO 2026-06-08 08:44:36 MarkDuplicates Tracking 1434603 as yet unmatched pairs. 59380 records in RAM. INFO 2026-06-08 08:44:38 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr3:40,532,827 INFO 2026-06-08 08:44:38 MarkDuplicates Tracking 1432355 as yet unmatched pairs. 57121 records in RAM. INFO 2026-06-08 08:44:39 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr3:46,996,042 INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 1429703 as yet unmatched pairs. 54463 records in RAM. INFO 2026-06-08 08:44:41 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:48,415,188 INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 1427438 as yet unmatched pairs. 52193 records in RAM. INFO 2026-06-08 08:44:42 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr3:49,101,384 INFO 2026-06-08 08:44:42 MarkDuplicates Tracking 1424265 as yet unmatched pairs. 49014 records in RAM. INFO 2026-06-08 08:44:44 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr3:50,057,922 INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 1421487 as yet unmatched pairs. 46230 records in RAM. INFO 2026-06-08 08:44:45 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:52,230,887 INFO 2026-06-08 08:44:45 MarkDuplicates Tracking 1418957 as yet unmatched pairs. 43688 records in RAM. INFO 2026-06-08 08:44:47 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr3:52,825,970 INFO 2026-06-08 08:44:47 MarkDuplicates Tracking 1416107 as yet unmatched pairs. 40837 records in RAM. INFO 2026-06-08 08:44:48 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:58,637,151 INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 1413528 as yet unmatched pairs. 38255 records in RAM. INFO 2026-06-08 08:44:50 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:81,705,476 INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 1410778 as yet unmatched pairs. 35479 records in RAM. INFO 2026-06-08 08:44:51 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:108,219,472 INFO 2026-06-08 08:44:51 MarkDuplicates Tracking 1408392 as yet unmatched pairs. 33091 records in RAM. INFO 2026-06-08 08:44:53 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:121,714,869 INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 1405933 as yet unmatched pairs. 30628 records in RAM. INFO 2026-06-08 08:44:54 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:125,107,730 INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 1403346 as yet unmatched pairs. 28039 records in RAM. INFO 2026-06-08 08:44:56 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:129,304,617 INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 1400447 as yet unmatched pairs. 25124 records in RAM. INFO 2026-06-08 08:44:57 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:133,775,462 INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 1397901 as yet unmatched pairs. 22577 records in RAM. INFO 2026-06-08 08:44:59 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:142,519,680 INFO 2026-06-08 08:44:59 MarkDuplicates Tracking 1395093 as yet unmatched pairs. 19766 records in RAM. INFO 2026-06-08 08:45:01 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:155,485,567 INFO 2026-06-08 08:45:01 MarkDuplicates Tracking 1392510 as yet unmatched pairs. 17173 records in RAM. INFO 2026-06-08 08:45:03 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:170,178,802 INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 1390203 as yet unmatched pairs. 14861 records in RAM. INFO 2026-06-08 08:45:05 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 2s. Last read position: chr3:183,777,677 INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 1387711 as yet unmatched pairs. 12360 records in RAM. INFO 2026-06-08 08:45:07 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:185,418,489 INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 1385077 as yet unmatched pairs. 9724 records in RAM. INFO 2026-06-08 08:45:08 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:188,341,685 INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 1382850 as yet unmatched pairs. 7493 records in RAM. INFO 2026-06-08 08:45:10 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:195,725,234 INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 1380107 as yet unmatched pairs. 4750 records in RAM. INFO 2026-06-08 08:45:11 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:195,785,970 INFO 2026-06-08 08:45:11 MarkDuplicates Tracking 1378959 as yet unmatched pairs. 3601 records in RAM. INFO 2026-06-08 08:45:13 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:197,225,927 INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 1376148 as yet unmatched pairs. 783 records in RAM. INFO 2026-06-08 08:45:14 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr4:1,312,001 INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 1373230 as yet unmatched pairs. 44826 records in RAM. INFO 2026-06-08 08:45:16 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr4:3,177,378 INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 1370283 as yet unmatched pairs. 41868 records in RAM. INFO 2026-06-08 08:45:18 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr4:9,248,653 INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 1367252 as yet unmatched pairs. 38831 records in RAM. INFO 2026-06-08 08:45:19 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr4:24,799,774 INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 1364795 as yet unmatched pairs. 36360 records in RAM. INFO 2026-06-08 08:45:20 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr4:42,590,742 INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 1362056 as yet unmatched pairs. 33602 records in RAM. INFO 2026-06-08 08:45:22 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr4:57,017,049 INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 1359488 as yet unmatched pairs. 31021 records in RAM. INFO 2026-06-08 08:45:23 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr4:73,156,105 INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 1356689 as yet unmatched pairs. 28218 records in RAM. INFO 2026-06-08 08:45:25 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr4:73,413,461 INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 1356305 as yet unmatched pairs. 27831 records in RAM. INFO 2026-06-08 08:45:27 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr4:73,419,507 INFO 2026-06-08 08:45:27 MarkDuplicates Tracking 1354590 as yet unmatched pairs. 26116 records in RAM. INFO 2026-06-08 08:45:28 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr4:77,011,759 INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 1349382 as yet unmatched pairs. 20905 records in RAM. INFO 2026-06-08 08:45:30 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr4:87,975,731 INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 1347312 as yet unmatched pairs. 18830 records in RAM. INFO 2026-06-08 08:45:31 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr4:99,340,587 INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 1344666 as yet unmatched pairs. 16181 records in RAM. INFO 2026-06-08 08:45:33 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr4:118,687,974 INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 1342272 as yet unmatched pairs. 13776 records in RAM. INFO 2026-06-08 08:45:34 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr4:139,890,759 INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 1339861 as yet unmatched pairs. 11353 records in RAM. INFO 2026-06-08 08:45:35 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr4:152,346,996 INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 1337526 as yet unmatched pairs. 9002 records in RAM. INFO 2026-06-08 08:45:37 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr4:154,585,954 INFO 2026-06-08 08:45:37 MarkDuplicates Tracking 1335445 as yet unmatched pairs. 6911 records in RAM. INFO 2026-06-08 08:45:39 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr4:155,696,975 INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 1332534 as yet unmatched pairs. 3998 records in RAM. INFO 2026-06-08 08:45:40 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr4:185,310,700 INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 1330017 as yet unmatched pairs. 1467 records in RAM. INFO 2026-06-08 08:45:43 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 2s. Last read position: chr5:473,306 INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 1328218 as yet unmatched pairs. 69840 records in RAM. INFO 2026-06-08 08:45:45 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 2s. Last read position: chr5:484,659 INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 1324059 as yet unmatched pairs. 65679 records in RAM. INFO 2026-06-08 08:45:46 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr5:9,044,459 INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 1320684 as yet unmatched pairs. 62292 records in RAM. INFO 2026-06-08 08:45:48 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr5:14,481,549 INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 1317900 as yet unmatched pairs. 59502 records in RAM. INFO 2026-06-08 08:45:50 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr5:34,005,806 INFO 2026-06-08 08:45:50 MarkDuplicates Tracking 1315186 as yet unmatched pairs. 56787 records in RAM. INFO 2026-06-08 08:45:51 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr5:44,809,301 INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 1312708 as yet unmatched pairs. 54300 records in RAM. INFO 2026-06-08 08:45:53 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr5:69,235,023 INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 1310356 as yet unmatched pairs. 51935 records in RAM. INFO 2026-06-08 08:45:54 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr5:74,697,064 INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 1308509 as yet unmatched pairs. 50084 records in RAM. INFO 2026-06-08 08:45:56 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr5:82,276,498 INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 1307429 as yet unmatched pairs. 49001 records in RAM. INFO 2026-06-08 08:45:57 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr5:96,662,467 INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 1303491 as yet unmatched pairs. 45061 records in RAM. INFO 2026-06-08 08:45:59 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr5:118,973,998 INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 1300876 as yet unmatched pairs. 42439 records in RAM. INFO 2026-06-08 08:46:00 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr5:128,186,547 INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 1298439 as yet unmatched pairs. 39996 records in RAM. INFO 2026-06-08 08:46:02 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr5:134,411,627 INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 1295428 as yet unmatched pairs. 36974 records in RAM. INFO 2026-06-08 08:46:03 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr5:138,467,010 INFO 2026-06-08 08:46:03 MarkDuplicates Tracking 1292832 as yet unmatched pairs. 34374 records in RAM. INFO 2026-06-08 08:46:05 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr5:140,526,022 INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 1290714 as yet unmatched pairs. 31799 records in RAM. INFO 2026-06-08 08:46:06 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr5:141,414,827 INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 1288023 as yet unmatched pairs. 29108 records in RAM. INFO 2026-06-08 08:46:08 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr5:146,503,863 INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 1285370 as yet unmatched pairs. 26451 records in RAM. INFO 2026-06-08 08:46:10 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr5:150,133,651 INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 1283321 as yet unmatched pairs. 24401 records in RAM. INFO 2026-06-08 08:46:11 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,116 INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 1282476 as yet unmatched pairs. 23554 records in RAM. INFO 2026-06-08 08:46:13 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr5:150,650,042 INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 1276831 as yet unmatched pairs. 17908 records in RAM. INFO 2026-06-08 08:46:14 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:157,285,361 INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 1274116 as yet unmatched pairs. 15189 records in RAM. INFO 2026-06-08 08:46:16 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:171,391,410 INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 1272199 as yet unmatched pairs. 13263 records in RAM. INFO 2026-06-08 08:46:18 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr5:176,392,729 INFO 2026-06-08 08:46:18 MarkDuplicates Tracking 1269291 as yet unmatched pairs. 10353 records in RAM. INFO 2026-06-08 08:46:20 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:178,055,601 INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 1266426 as yet unmatched pairs. 7486 records in RAM. INFO 2026-06-08 08:46:21 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:179,774,043 INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 1263881 as yet unmatched pairs. 4935 records in RAM. INFO 2026-06-08 08:46:23 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:179,867,782 INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 1260904 as yet unmatched pairs. 1958 records in RAM. INFO 2026-06-08 08:46:25 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 2s. Last read position: chr6:2,948,321 INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 1258012 as yet unmatched pairs. 82901 records in RAM. INFO 2026-06-08 08:46:27 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr6:7,303,594 INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 1255222 as yet unmatched pairs. 80102 records in RAM. INFO 2026-06-08 08:46:28 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr6:15,496,635 INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 1252671 as yet unmatched pairs. 77542 records in RAM. INFO 2026-06-08 08:46:30 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr6:26,031,890 INFO 2026-06-08 08:46:30 MarkDuplicates Tracking 1250090 as yet unmatched pairs. 74931 records in RAM. INFO 2026-06-08 08:46:31 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr6:26,368,829 INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 1247105 as yet unmatched pairs. 71945 records in RAM. INFO 2026-06-08 08:46:33 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr6:28,391,558 INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 1244378 as yet unmatched pairs. 69217 records in RAM. INFO 2026-06-08 08:46:35 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr6:30,583,611 INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 1242107 as yet unmatched pairs. 66944 records in RAM. INFO 2026-06-08 08:46:36 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr6:31,270,434 INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 1239629 as yet unmatched pairs. 64466 records in RAM. INFO 2026-06-08 08:46:37 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr6:31,641,797 INFO 2026-06-08 08:46:37 MarkDuplicates Tracking 1237047 as yet unmatched pairs. 61883 records in RAM. INFO 2026-06-08 08:46:39 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,613 INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 1234521 as yet unmatched pairs. 59356 records in RAM. INFO 2026-06-08 08:46:41 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr6:31,874,478 INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 1232647 as yet unmatched pairs. 57478 records in RAM. INFO 2026-06-08 08:46:42 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr6:32,001,499 INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 1231048 as yet unmatched pairs. 55879 records in RAM. INFO 2026-06-08 08:46:43 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr6:32,442,679 INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 1228233 as yet unmatched pairs. 53063 records in RAM. INFO 2026-06-08 08:46:45 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr6:33,304,309 INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 1225603 as yet unmatched pairs. 50430 records in RAM. INFO 2026-06-08 08:46:46 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr6:33,688,340 INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 1222853 as yet unmatched pairs. 47677 records in RAM. INFO 2026-06-08 08:46:48 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr6:36,201,513 INFO 2026-06-08 08:46:48 MarkDuplicates Tracking 1219970 as yet unmatched pairs. 44792 records in RAM. INFO 2026-06-08 08:46:49 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr6:42,128,672 INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 1217250 as yet unmatched pairs. 42062 records in RAM. INFO 2026-06-08 08:46:51 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr6:43,524,547 INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 1214306 as yet unmatched pairs. 39116 records in RAM. INFO 2026-06-08 08:46:52 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr6:44,253,310 INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 1211760 as yet unmatched pairs. 36563 records in RAM. INFO 2026-06-08 08:46:54 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr6:56,530,026 INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 1209119 as yet unmatched pairs. 33909 records in RAM. INFO 2026-06-08 08:46:56 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:75,862,643 INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 1206917 as yet unmatched pairs. 31694 records in RAM. INFO 2026-06-08 08:46:57 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:89,670,935 INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 1204217 as yet unmatched pairs. 28989 records in RAM. INFO 2026-06-08 08:47:00 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 2s. Last read position: chr6:107,893,601 INFO 2026-06-08 08:47:00 MarkDuplicates Tracking 1201601 as yet unmatched pairs. 26368 records in RAM. INFO 2026-06-08 08:47:01 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:116,172,381 INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 1198824 as yet unmatched pairs. 23564 records in RAM. INFO 2026-06-08 08:47:03 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:129,641,923 INFO 2026-06-08 08:47:03 MarkDuplicates Tracking 1196317 as yet unmatched pairs. 21051 records in RAM. INFO 2026-06-08 08:47:04 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:135,195,891 INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 1194346 as yet unmatched pairs. 19077 records in RAM. INFO 2026-06-08 08:47:06 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:139,166,738 INFO 2026-06-08 08:47:06 MarkDuplicates Tracking 1191117 as yet unmatched pairs. 15843 records in RAM. INFO 2026-06-08 08:47:07 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:149,863,563 INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 1188576 as yet unmatched pairs. 13298 records in RAM. INFO 2026-06-08 08:47:09 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:158,083,064 INFO 2026-06-08 08:47:09 MarkDuplicates Tracking 1185825 as yet unmatched pairs. 10544 records in RAM. INFO 2026-06-08 08:47:10 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:158,789,361 INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 1182915 as yet unmatched pairs. 7632 records in RAM. INFO 2026-06-08 08:47:12 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:160,628,215 INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 1180394 as yet unmatched pairs. 5109 records in RAM. INFO 2026-06-08 08:47:13 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:168,653,197 INFO 2026-06-08 08:47:13 MarkDuplicates Tracking 1177974 as yet unmatched pairs. 2682 records in RAM. INFO 2026-06-08 08:47:15 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 2s. Last read position: chr7:510,801 INFO 2026-06-08 08:47:15 MarkDuplicates Tracking 1175051 as yet unmatched pairs. 121551 records in RAM. INFO 2026-06-08 08:47:17 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr7:1,484,132 INFO 2026-06-08 08:47:17 MarkDuplicates Tracking 1171467 as yet unmatched pairs. 117961 records in RAM. INFO 2026-06-08 08:47:19 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr7:5,308,929 INFO 2026-06-08 08:47:19 MarkDuplicates Tracking 1168055 as yet unmatched pairs. 114545 records in RAM. INFO 2026-06-08 08:47:20 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr7:5,527,535 INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 1164690 as yet unmatched pairs. 111178 records in RAM. INFO 2026-06-08 08:47:22 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,277 INFO 2026-06-08 08:47:22 MarkDuplicates Tracking 1165315 as yet unmatched pairs. 111802 records in RAM. INFO 2026-06-08 08:47:23 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr7:16,685,904 INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 1159235 as yet unmatched pairs. 105718 records in RAM. INFO 2026-06-08 08:47:25 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr7:27,172,135 INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 1156882 as yet unmatched pairs. 103361 records in RAM. INFO 2026-06-08 08:47:26 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr7:39,997,572 INFO 2026-06-08 08:47:26 MarkDuplicates Tracking 1154062 as yet unmatched pairs. 100540 records in RAM. INFO 2026-06-08 08:47:28 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr7:44,112,819 INFO 2026-06-08 08:47:28 MarkDuplicates Tracking 1151466 as yet unmatched pairs. 97941 records in RAM. INFO 2026-06-08 08:47:30 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 2s. Last read position: chr7:47,303,009 INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 1148692 as yet unmatched pairs. 95160 records in RAM. INFO 2026-06-08 08:47:32 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr7:63,568,631 INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 1145779 as yet unmatched pairs. 92242 records in RAM. INFO 2026-06-08 08:47:33 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr7:72,948,398 INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 1143886 as yet unmatched pairs. 90340 records in RAM. INFO 2026-06-08 08:47:35 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr7:73,769,803 INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 1142055 as yet unmatched pairs. 88507 records in RAM. INFO 2026-06-08 08:47:37 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr7:75,209,484 INFO 2026-06-08 08:47:37 MarkDuplicates Tracking 1139440 as yet unmatched pairs. 85891 records in RAM. INFO 2026-06-08 08:47:38 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr7:76,063,539 INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 1137095 as yet unmatched pairs. 83534 records in RAM. INFO 2026-06-08 08:47:40 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr7:77,005,716 INFO 2026-06-08 08:47:40 MarkDuplicates Tracking 1134237 as yet unmatched pairs. 80671 records in RAM. INFO 2026-06-08 08:47:41 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr7:92,080,138 INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 1131952 as yet unmatched pairs. 78382 records in RAM. INFO 2026-06-08 08:47:43 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr7:94,417,750 INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 1129566 as yet unmatched pairs. 75994 records in RAM. INFO 2026-06-08 08:47:44 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr7:98,912,046 INFO 2026-06-08 08:47:44 MarkDuplicates Tracking 1126523 as yet unmatched pairs. 72940 records in RAM. INFO 2026-06-08 08:47:46 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr7:99,968,259 INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 1124139 as yet unmatched pairs. 70554 records in RAM. INFO 2026-06-08 08:47:47 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:100,582,339 INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 1121310 as yet unmatched pairs. 67724 records in RAM. INFO 2026-06-08 08:47:49 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr7:100,990,983 INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 1118648 as yet unmatched pairs. 65054 records in RAM. INFO 2026-06-08 08:47:50 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:100,992,189 INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 1118041 as yet unmatched pairs. 64447 records in RAM. INFO 2026-06-08 08:47:52 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr7:100,992,717 INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 1115755 as yet unmatched pairs. 62161 records in RAM. INFO 2026-06-08 08:47:53 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr7:100,992,997 INFO 2026-06-08 08:47:53 MarkDuplicates Tracking 1114047 as yet unmatched pairs. 60453 records in RAM. INFO 2026-06-08 08:47:54 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,199 INFO 2026-06-08 08:47:54 MarkDuplicates Tracking 1112225 as yet unmatched pairs. 58631 records in RAM. INFO 2026-06-08 08:47:56 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,655 INFO 2026-06-08 08:47:56 MarkDuplicates Tracking 1112417 as yet unmatched pairs. 58823 records in RAM. INFO 2026-06-08 08:47:57 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,908 INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 1111743 as yet unmatched pairs. 58149 records in RAM. INFO 2026-06-08 08:47:58 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 0s. Last read position: chr7:100,994,204 INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 1111151 as yet unmatched pairs. 57557 records in RAM. INFO 2026-06-08 08:47:59 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,723 INFO 2026-06-08 08:47:59 MarkDuplicates Tracking 1110601 as yet unmatched pairs. 57006 records in RAM. INFO 2026-06-08 08:48:00 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 0s. Last read position: chr7:100,994,996 INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 1110598 as yet unmatched pairs. 57003 records in RAM. INFO 2026-06-08 08:48:01 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 0s. Last read position: chr7:100,995,260 INFO 2026-06-08 08:48:01 MarkDuplicates Tracking 1110858 as yet unmatched pairs. 57263 records in RAM. INFO 2026-06-08 08:48:02 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,687 INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 1112946 as yet unmatched pairs. 59351 records in RAM. INFO 2026-06-08 08:48:03 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,061 INFO 2026-06-08 08:48:03 MarkDuplicates Tracking 1109471 as yet unmatched pairs. 55876 records in RAM. INFO 2026-06-08 08:48:04 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 0s. Last read position: chr7:100,996,275 INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 1109401 as yet unmatched pairs. 55806 records in RAM. INFO 2026-06-08 08:48:05 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 0s. Last read position: chr7:100,996,390 INFO 2026-06-08 08:48:05 MarkDuplicates Tracking 1113070 as yet unmatched pairs. 59475 records in RAM. INFO 2026-06-08 08:48:06 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,541 INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 1108226 as yet unmatched pairs. 54630 records in RAM. INFO 2026-06-08 08:48:08 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,803 INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 1107164 as yet unmatched pairs. 53568 records in RAM. INFO 2026-06-08 08:48:09 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,990 INFO 2026-06-08 08:48:09 MarkDuplicates Tracking 1107294 as yet unmatched pairs. 53694 records in RAM. INFO 2026-06-08 08:48:10 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,218 INFO 2026-06-08 08:48:10 MarkDuplicates Tracking 1103225 as yet unmatched pairs. 49625 records in RAM. INFO 2026-06-08 08:48:12 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,453 INFO 2026-06-08 08:48:12 MarkDuplicates Tracking 1104595 as yet unmatched pairs. 50995 records in RAM. INFO 2026-06-08 08:48:15 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 2s. Last read position: chr7:100,997,624 INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 1099935 as yet unmatched pairs. 46334 records in RAM. INFO 2026-06-08 08:48:16 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,894 INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 1100958 as yet unmatched pairs. 47357 records in RAM. INFO 2026-06-08 08:48:17 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,090 INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 1098662 as yet unmatched pairs. 45061 records in RAM. INFO 2026-06-08 08:48:18 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,341 INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 1098433 as yet unmatched pairs. 44832 records in RAM. INFO 2026-06-08 08:48:19 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 0s. Last read position: chr7:100,998,598 INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 1099207 as yet unmatched pairs. 45606 records in RAM. INFO 2026-06-08 08:48:20 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,767 INFO 2026-06-08 08:48:20 MarkDuplicates Tracking 1100197 as yet unmatched pairs. 46596 records in RAM. INFO 2026-06-08 08:48:21 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 0s. Last read position: chr7:100,998,926 INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 1097231 as yet unmatched pairs. 43630 records in RAM. INFO 2026-06-08 08:48:22 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 0s. Last read position: chr7:100,999,201 INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 1097405 as yet unmatched pairs. 43804 records in RAM. INFO 2026-06-08 08:48:23 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,574 INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 1096889 as yet unmatched pairs. 43286 records in RAM. INFO 2026-06-08 08:48:25 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,887 INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 1096096 as yet unmatched pairs. 42492 records in RAM. INFO 2026-06-08 08:48:26 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,086 INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 1094465 as yet unmatched pairs. 40861 records in RAM. INFO 2026-06-08 08:48:27 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,372 INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 1092847 as yet unmatched pairs. 39242 records in RAM. INFO 2026-06-08 08:48:28 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,561 INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 1090514 as yet unmatched pairs. 36908 records in RAM. INFO 2026-06-08 08:48:30 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,813 INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 1092507 as yet unmatched pairs. 38901 records in RAM. INFO 2026-06-08 08:48:31 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,984 INFO 2026-06-08 08:48:31 MarkDuplicates Tracking 1091834 as yet unmatched pairs. 38228 records in RAM. INFO 2026-06-08 08:48:32 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,244 INFO 2026-06-08 08:48:32 MarkDuplicates Tracking 1090177 as yet unmatched pairs. 36571 records in RAM. INFO 2026-06-08 08:48:34 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,421 INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 1086772 as yet unmatched pairs. 33166 records in RAM. INFO 2026-06-08 08:48:35 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,582 INFO 2026-06-08 08:48:35 MarkDuplicates Tracking 1086739 as yet unmatched pairs. 33133 records in RAM. INFO 2026-06-08 08:48:37 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,843 INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 1087116 as yet unmatched pairs. 33510 records in RAM. INFO 2026-06-08 08:48:37 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 0s. Last read position: chr7:101,002,090 INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 1086650 as yet unmatched pairs. 33044 records in RAM. INFO 2026-06-08 08:48:38 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 0s. Last read position: chr7:101,002,366 INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 1089149 as yet unmatched pairs. 35542 records in RAM. INFO 2026-06-08 08:48:40 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,640 INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 1085105 as yet unmatched pairs. 31498 records in RAM. INFO 2026-06-08 08:48:41 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,264 INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 1084464 as yet unmatched pairs. 30856 records in RAM. INFO 2026-06-08 08:48:42 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,768 INFO 2026-06-08 08:48:42 MarkDuplicates Tracking 1083028 as yet unmatched pairs. 29420 records in RAM. INFO 2026-06-08 08:48:44 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr7:101,004,059 INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 1082076 as yet unmatched pairs. 28468 records in RAM. INFO 2026-06-08 08:48:45 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr7:101,005,337 INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 1081115 as yet unmatched pairs. 27505 records in RAM. INFO 2026-06-08 08:48:46 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr7:102,483,586 INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 1078468 as yet unmatched pairs. 24857 records in RAM. INFO 2026-06-08 08:48:48 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr7:105,110,491 INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 1077192 as yet unmatched pairs. 23575 records in RAM. INFO 2026-06-08 08:48:49 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr7:116,699,451 INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 1074830 as yet unmatched pairs. 21203 records in RAM. INFO 2026-06-08 08:48:51 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr7:127,698,919 INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 1072703 as yet unmatched pairs. 19074 records in RAM. INFO 2026-06-08 08:48:53 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr7:128,657,012 INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 1069823 as yet unmatched pairs. 16193 records in RAM. INFO 2026-06-08 08:49:56 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 63s. Last read position: chr7:135,977,250 INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 1067575 as yet unmatched pairs. 13941 records in RAM. INFO 2026-06-08 08:49:58 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr7:139,964,092 INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 1064975 as yet unmatched pairs. 11339 records in RAM. INFO 2026-06-08 08:49:59 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr7:143,858,970 INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 1062520 as yet unmatched pairs. 8881 records in RAM. INFO 2026-06-08 08:50:01 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr7:149,012,170 INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 1061193 as yet unmatched pairs. 7553 records in RAM. INFO 2026-06-08 08:50:02 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr7:151,069,967 INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 1058140 as yet unmatched pairs. 4494 records in RAM. INFO 2026-06-08 08:50:04 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr7:155,739,654 INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 1055301 as yet unmatched pairs. 1646 records in RAM. INFO 2026-06-08 08:50:06 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 2s. Last read position: chr8:11,779,710 INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 1052489 as yet unmatched pairs. 55867 records in RAM. INFO 2026-06-08 08:50:08 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr8:19,833,286 INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 1049984 as yet unmatched pairs. 53360 records in RAM. INFO 2026-06-08 08:50:09 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr8:25,292,072 INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 1046942 as yet unmatched pairs. 50314 records in RAM. INFO 2026-06-08 08:50:11 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr8:37,695,933 INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 1044302 as yet unmatched pairs. 47668 records in RAM. INFO 2026-06-08 08:50:12 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr8:37,872,642 INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 1040760 as yet unmatched pairs. 44125 records in RAM. INFO 2026-06-08 08:50:14 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:41,933,166 INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 1038260 as yet unmatched pairs. 41622 records in RAM. INFO 2026-06-08 08:50:15 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr8:56,074,108 INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 1035715 as yet unmatched pairs. 39075 records in RAM. INFO 2026-06-08 08:50:17 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr8:69,624,181 INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 1033517 as yet unmatched pairs. 36868 records in RAM. INFO 2026-06-08 08:50:18 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:89,943,351 INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 1030955 as yet unmatched pairs. 34296 records in RAM. INFO 2026-06-08 08:50:20 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr8:99,776,778 INFO 2026-06-08 08:50:20 MarkDuplicates Tracking 1028420 as yet unmatched pairs. 31756 records in RAM. INFO 2026-06-08 08:50:21 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:102,297,431 INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 1025889 as yet unmatched pairs. 29219 records in RAM. INFO 2026-06-08 08:50:23 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:120,270,069 INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 1023445 as yet unmatched pairs. 26749 records in RAM. INFO 2026-06-08 08:50:24 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,796 INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 1020926 as yet unmatched pairs. 24221 records in RAM. INFO 2026-06-08 08:50:26 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:140,558,444 INFO 2026-06-08 08:50:26 MarkDuplicates Tracking 1017947 as yet unmatched pairs. 21234 records in RAM. INFO 2026-06-08 08:50:27 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr8:143,727,183 INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 1014628 as yet unmatched pairs. 17904 records in RAM. INFO 2026-06-08 08:50:28 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,003 INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 1013608 as yet unmatched pairs. 16883 records in RAM. INFO 2026-06-08 08:50:30 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,386 INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 1012134 as yet unmatched pairs. 15409 records in RAM. INFO 2026-06-08 08:50:31 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,104 INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 1011969 as yet unmatched pairs. 15244 records in RAM. INFO 2026-06-08 08:50:32 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,915 INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 1009771 as yet unmatched pairs. 13043 records in RAM. INFO 2026-06-08 08:50:33 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr8:143,868,149 INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 1008974 as yet unmatched pairs. 12246 records in RAM. INFO 2026-06-08 08:50:35 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr8:143,923,988 INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 1005482 as yet unmatched pairs. 8752 records in RAM. INFO 2026-06-08 08:50:37 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr8:144,190,924 INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 1001813 as yet unmatched pairs. 5083 records in RAM. INFO 2026-06-08 08:50:39 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 2s. Last read position: chr8:144,473,340 INFO 2026-06-08 08:50:39 MarkDuplicates Tracking 998658 as yet unmatched pairs. 1924 records in RAM. INFO 2026-06-08 08:50:42 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 2s. Last read position: chr9:2,192,743 INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 995862 as yet unmatched pairs. 70232 records in RAM. INFO 2026-06-08 08:50:43 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr9:15,423,972 INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 993563 as yet unmatched pairs. 67927 records in RAM. INFO 2026-06-08 08:50:45 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:32,693,964 INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 990949 as yet unmatched pairs. 65303 records in RAM. INFO 2026-06-08 08:50:46 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr9:35,072,354 INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 988306 as yet unmatched pairs. 62657 records in RAM. INFO 2026-06-08 08:50:48 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr9:36,211,660 INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 985388 as yet unmatched pairs. 59738 records in RAM. INFO 2026-06-08 08:50:49 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr9:69,221,215 INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 983414 as yet unmatched pairs. 57673 records in RAM. INFO 2026-06-08 08:50:51 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr9:77,214,331 INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 981148 as yet unmatched pairs. 55403 records in RAM. INFO 2026-06-08 08:50:52 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr9:88,410,664 INFO 2026-06-08 08:50:52 MarkDuplicates Tracking 978515 as yet unmatched pairs. 52762 records in RAM. INFO 2026-06-08 08:50:54 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:93,267,829 INFO 2026-06-08 08:50:54 MarkDuplicates Tracking 975628 as yet unmatched pairs. 49872 records in RAM. INFO 2026-06-08 08:50:55 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr9:97,037,962 INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 972995 as yet unmatched pairs. 47235 records in RAM. INFO 2026-06-08 08:50:57 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:101,429,755 INFO 2026-06-08 08:50:57 MarkDuplicates Tracking 970520 as yet unmatched pairs. 44759 records in RAM. INFO 2026-06-08 08:50:58 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr9:110,137,047 INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 967680 as yet unmatched pairs. 41915 records in RAM. INFO 2026-06-08 08:51:00 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:114,060,157 INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 965289 as yet unmatched pairs. 39521 records in RAM. INFO 2026-06-08 08:51:01 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr9:114,617,253 INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 962662 as yet unmatched pairs. 36891 records in RAM. INFO 2026-06-08 08:51:03 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:122,859,996 INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 959950 as yet unmatched pairs. 34176 records in RAM. INFO 2026-06-08 08:51:04 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr9:127,399,971 INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 957160 as yet unmatched pairs. 31379 records in RAM. INFO 2026-06-08 08:51:06 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr9:128,166,237 INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 954465 as yet unmatched pairs. 28681 records in RAM. INFO 2026-06-08 08:51:08 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr9:128,693,994 INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 951437 as yet unmatched pairs. 25648 records in RAM. INFO 2026-06-08 08:51:09 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr9:130,620,406 INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 948598 as yet unmatched pairs. 22802 records in RAM. INFO 2026-06-08 08:51:11 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr9:131,476,168 INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 945849 as yet unmatched pairs. 20051 records in RAM. INFO 2026-06-08 08:51:13 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr9:133,350,670 INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 943417 as yet unmatched pairs. 17617 records in RAM. INFO 2026-06-08 08:51:14 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr9:134,752,607 INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 940630 as yet unmatched pairs. 14830 records in RAM. INFO 2026-06-08 08:51:16 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr9:136,447,242 INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 937208 as yet unmatched pairs. 11403 records in RAM. INFO 2026-06-08 08:51:18 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr9:136,523,931 INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 934175 as yet unmatched pairs. 8369 records in RAM. INFO 2026-06-08 08:51:19 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr9:137,013,004 INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 930794 as yet unmatched pairs. 4988 records in RAM. INFO 2026-06-08 08:51:21 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr9:137,354,652 INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 927244 as yet unmatched pairs. 1435 records in RAM. INFO 2026-06-08 08:51:23 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 2s. Last read position: chr10:3,781,939 INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 924426 as yet unmatched pairs. 57308 records in RAM. INFO 2026-06-08 08:51:24 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr10:12,100,230 INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 921947 as yet unmatched pairs. 54828 records in RAM. INFO 2026-06-08 08:51:26 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr10:22,714,226 INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 919211 as yet unmatched pairs. 52086 records in RAM. INFO 2026-06-08 08:51:27 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr10:29,487,261 INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 916762 as yet unmatched pairs. 49633 records in RAM. INFO 2026-06-08 08:51:29 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr10:32,919,883 INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 914766 as yet unmatched pairs. 47631 records in RAM. INFO 2026-06-08 08:51:30 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr10:45,740,235 INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 912016 as yet unmatched pairs. 44869 records in RAM. INFO 2026-06-08 08:51:32 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr10:50,097,674 INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 910201 as yet unmatched pairs. 43051 records in RAM. INFO 2026-06-08 08:51:33 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr10:63,465,475 INFO 2026-06-08 08:51:33 MarkDuplicates Tracking 907843 as yet unmatched pairs. 40690 records in RAM. INFO 2026-06-08 08:51:34 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr10:71,834,376 INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 905930 as yet unmatched pairs. 38766 records in RAM. INFO 2026-06-08 08:51:36 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr10:74,708,330 INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 902424 as yet unmatched pairs. 35259 records in RAM. INFO 2026-06-08 08:51:38 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr10:79,312,642 INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 900043 as yet unmatched pairs. 32875 records in RAM. INFO 2026-06-08 08:51:39 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr10:87,068,081 INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 897684 as yet unmatched pairs. 30512 records in RAM. INFO 2026-06-08 08:51:41 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr10:93,593,892 INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 895131 as yet unmatched pairs. 27958 records in RAM. INFO 2026-06-08 08:51:43 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 2s. Last read position: chr10:95,871,348 INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 892389 as yet unmatched pairs. 25215 records in RAM. INFO 2026-06-08 08:51:45 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr10:99,879,848 INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 889621 as yet unmatched pairs. 22444 records in RAM. INFO 2026-06-08 08:51:46 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr10:102,133,063 INFO 2026-06-08 08:51:46 MarkDuplicates Tracking 886683 as yet unmatched pairs. 19501 records in RAM. INFO 2026-06-08 08:51:48 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 2s. Last read position: chr10:103,993,044 INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 883989 as yet unmatched pairs. 16802 records in RAM. INFO 2026-06-08 08:51:50 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr10:113,165,747 INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 881533 as yet unmatched pairs. 14337 records in RAM. INFO 2026-06-08 08:51:51 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr10:119,051,204 INFO 2026-06-08 08:51:51 MarkDuplicates Tracking 878840 as yet unmatched pairs. 11637 records in RAM. INFO 2026-06-08 08:51:53 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr10:122,514,239 INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 876399 as yet unmatched pairs. 9194 records in RAM. INFO 2026-06-08 08:51:54 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr10:122,595,552 INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 874912 as yet unmatched pairs. 7707 records in RAM. INFO 2026-06-08 08:51:55 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr10:122,614,225 INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 874349 as yet unmatched pairs. 7144 records in RAM. INFO 2026-06-08 08:51:56 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr10:126,038,260 INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 871238 as yet unmatched pairs. 4032 records in RAM. INFO 2026-06-08 08:51:58 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr10:133,309,440 INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 868626 as yet unmatched pairs. 1406 records in RAM. INFO 2026-06-08 08:52:00 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 2s. Last read position: chr11:320,625 INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 866865 as yet unmatched pairs. 93605 records in RAM. INFO 2026-06-08 08:52:02 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:811,635 INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 863254 as yet unmatched pairs. 89982 records in RAM. INFO 2026-06-08 08:52:03 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:1,883,545 INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 859717 as yet unmatched pairs. 86437 records in RAM. INFO 2026-06-08 08:52:05 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:6,482,070 INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 856928 as yet unmatched pairs. 83646 records in RAM. INFO 2026-06-08 08:52:06 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:10,580,456 INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 854197 as yet unmatched pairs. 80914 records in RAM. INFO 2026-06-08 08:52:08 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:17,367,117 INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 851810 as yet unmatched pairs. 78524 records in RAM. INFO 2026-06-08 08:52:10 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr11:34,097,282 INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 849506 as yet unmatched pairs. 76210 records in RAM. INFO 2026-06-08 08:52:11 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:46,367,355 INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 846757 as yet unmatched pairs. 73458 records in RAM. INFO 2026-06-08 08:52:12 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:47,767,122 INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 844044 as yet unmatched pairs. 70732 records in RAM. INFO 2026-06-08 08:52:14 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:57,801,768 INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 841751 as yet unmatched pairs. 68437 records in RAM. INFO 2026-06-08 08:52:16 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:61,313,605 INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 838803 as yet unmatched pairs. 65488 records in RAM. INFO 2026-06-08 08:52:17 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:61,967,456 INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 836421 as yet unmatched pairs. 63054 records in RAM. INFO 2026-06-08 08:52:19 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:62,532,516 INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 834123 as yet unmatched pairs. 60755 records in RAM. INFO 2026-06-08 08:52:21 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 2s. Last read position: chr11:62,722,629 INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 831537 as yet unmatched pairs. 58169 records in RAM. INFO 2026-06-08 08:52:23 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 2s. Last read position: chr11:64,237,531 INFO 2026-06-08 08:52:23 MarkDuplicates Tracking 828487 as yet unmatched pairs. 55116 records in RAM. INFO 2026-06-08 08:52:25 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:64,767,209 INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 825262 as yet unmatched pairs. 51890 records in RAM. INFO 2026-06-08 08:52:26 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:65,208,099 INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 822269 as yet unmatched pairs. 48895 records in RAM. INFO 2026-06-08 08:52:28 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:65,655,890 INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 819232 as yet unmatched pairs. 45857 records in RAM. INFO 2026-06-08 08:52:29 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:66,238,822 INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 816031 as yet unmatched pairs. 42654 records in RAM. INFO 2026-06-08 08:52:31 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:67,266,752 INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 813086 as yet unmatched pairs. 39706 records in RAM. INFO 2026-06-08 08:52:32 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:68,049,424 INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 809817 as yet unmatched pairs. 36435 records in RAM. INFO 2026-06-08 08:52:34 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:69,648,070 INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 807476 as yet unmatched pairs. 34092 records in RAM. INFO 2026-06-08 08:52:35 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:72,013,073 INFO 2026-06-08 08:52:35 MarkDuplicates Tracking 804475 as yet unmatched pairs. 31089 records in RAM. INFO 2026-06-08 08:52:37 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:73,395,106 INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 801454 as yet unmatched pairs. 28068 records in RAM. INFO 2026-06-08 08:52:38 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:76,191,838 INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 798740 as yet unmatched pairs. 25352 records in RAM. INFO 2026-06-08 08:52:40 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:85,727,732 INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 796142 as yet unmatched pairs. 22749 records in RAM. INFO 2026-06-08 08:52:41 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:96,341,754 INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 793901 as yet unmatched pairs. 20502 records in RAM. INFO 2026-06-08 08:52:43 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr11:111,786,438 INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 790892 as yet unmatched pairs. 17492 records in RAM. INFO 2026-06-08 08:52:44 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:116,832,762 INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 788675 as yet unmatched pairs. 15272 records in RAM. INFO 2026-06-08 08:52:46 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:117,281,981 INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 785525 as yet unmatched pairs. 12122 records in RAM. INFO 2026-06-08 08:52:48 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 2s. Last read position: chr11:118,899,358 INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 782965 as yet unmatched pairs. 9561 records in RAM. INFO 2026-06-08 08:52:49 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:121,488,073 INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 780084 as yet unmatched pairs. 6680 records in RAM. INFO 2026-06-08 08:52:52 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 2s. Last read position: chr11:126,277,487 INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 777650 as yet unmatched pairs. 4246 records in RAM. INFO 2026-06-08 08:52:53 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr11:130,197,906 INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 775041 as yet unmatched pairs. 1627 records in RAM. INFO 2026-06-08 08:52:55 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 2s. Last read position: chr12:1,593,608 INFO 2026-06-08 08:52:55 MarkDuplicates Tracking 772086 as yet unmatched pairs. 79265 records in RAM. INFO 2026-06-08 08:52:57 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr12:6,329,512 INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 769308 as yet unmatched pairs. 76486 records in RAM. INFO 2026-06-08 08:52:59 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr12:6,748,787 INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 766579 as yet unmatched pairs. 73756 records in RAM. INFO 2026-06-08 08:53:00 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr12:7,080,775 INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 763957 as yet unmatched pairs. 71133 records in RAM. INFO 2026-06-08 08:53:01 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr12:10,022,483 INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 761432 as yet unmatched pairs. 68603 records in RAM. INFO 2026-06-08 08:53:03 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr12:14,424,725 INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 758975 as yet unmatched pairs. 66146 records in RAM. INFO 2026-06-08 08:53:05 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr12:26,665,927 INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 756549 as yet unmatched pairs. 63716 records in RAM. INFO 2026-06-08 08:53:06 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr12:45,926,742 INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 754119 as yet unmatched pairs. 61280 records in RAM. INFO 2026-06-08 08:53:08 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr12:49,038,299 INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 751647 as yet unmatched pairs. 58806 records in RAM. INFO 2026-06-08 08:53:09 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr12:49,642,930 INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 749399 as yet unmatched pairs. 56558 records in RAM. INFO 2026-06-08 08:53:11 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr12:52,054,353 INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 747000 as yet unmatched pairs. 54152 records in RAM. INFO 2026-06-08 08:53:12 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr12:52,904,847 INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 744608 as yet unmatched pairs. 51758 records in RAM. INFO 2026-06-08 08:53:14 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:53,022,528 INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 741092 as yet unmatched pairs. 48238 records in RAM. INFO 2026-06-08 08:53:15 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr12:53,517,176 INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 738590 as yet unmatched pairs. 45735 records in RAM. INFO 2026-06-08 08:53:17 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:55,725,815 INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 736327 as yet unmatched pairs. 43472 records in RAM. INFO 2026-06-08 08:53:18 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr12:56,159,682 INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 733965 as yet unmatched pairs. 41108 records in RAM. INFO 2026-06-08 08:53:20 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 2s. Last read position: chr12:56,638,297 INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 731900 as yet unmatched pairs. 39043 records in RAM. INFO 2026-06-08 08:53:23 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 2s. Last read position: chr12:57,098,541 INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 728950 as yet unmatched pairs. 36093 records in RAM. INFO 2026-06-08 08:53:25 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:57,175,531 INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 725886 as yet unmatched pairs. 33022 records in RAM. INFO 2026-06-08 08:53:26 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:57,470,332 INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 722869 as yet unmatched pairs. 30000 records in RAM. INFO 2026-06-08 08:53:28 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr12:62,965,908 INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 720277 as yet unmatched pairs. 27406 records in RAM. INFO 2026-06-08 08:53:29 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:76,030,801 INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 718138 as yet unmatched pairs. 25252 records in RAM. INFO 2026-06-08 08:53:31 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:95,683,630 INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 715688 as yet unmatched pairs. 22796 records in RAM. INFO 2026-06-08 08:53:32 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr12:104,265,785 INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 713220 as yet unmatched pairs. 20328 records in RAM. INFO 2026-06-08 08:53:34 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:110,342,379 INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 710645 as yet unmatched pairs. 17750 records in RAM. INFO 2026-06-08 08:53:35 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:112,478,003 INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 707836 as yet unmatched pairs. 14939 records in RAM. INFO 2026-06-08 08:53:37 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:119,263,559 INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 705402 as yet unmatched pairs. 12504 records in RAM. INFO 2026-06-08 08:53:38 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:121,453,173 INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 702489 as yet unmatched pairs. 9591 records in RAM. INFO 2026-06-08 08:53:40 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:122,981,691 INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 699873 as yet unmatched pairs. 6968 records in RAM. INFO 2026-06-08 08:53:41 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr12:124,815,104 INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 696707 as yet unmatched pairs. 3797 records in RAM. INFO 2026-06-08 08:53:43 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr12:132,714,900 INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 693808 as yet unmatched pairs. 888 records in RAM. INFO 2026-06-08 08:53:45 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr13:21,413,673 INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 691257 as yet unmatched pairs. 26870 records in RAM. INFO 2026-06-08 08:53:46 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr13:27,968,560 INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 688815 as yet unmatched pairs. 24417 records in RAM. INFO 2026-06-08 08:53:48 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr13:37,579,019 INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 686281 as yet unmatched pairs. 21878 records in RAM. INFO 2026-06-08 08:53:49 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr13:44,989,200 INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 683465 as yet unmatched pairs. 19062 records in RAM. INFO 2026-06-08 08:53:52 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 2s. Last read position: chr13:49,481,030 INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 680911 as yet unmatched pairs. 16506 records in RAM. INFO 2026-06-08 08:53:53 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr13:75,560,862 INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 678411 as yet unmatched pairs. 13993 records in RAM. INFO 2026-06-08 08:53:55 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr13:98,576,768 INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 675879 as yet unmatched pairs. 11456 records in RAM. INFO 2026-06-08 08:53:56 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr13:110,169,656 INFO 2026-06-08 08:53:56 MarkDuplicates Tracking 673004 as yet unmatched pairs. 8569 records in RAM. INFO 2026-06-08 08:53:58 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr13:110,430,417 INFO 2026-06-08 08:53:58 MarkDuplicates Tracking 670706 as yet unmatched pairs. 6270 records in RAM. INFO 2026-06-08 08:53:59 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr13:111,283,057 INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 666979 as yet unmatched pairs. 2543 records in RAM. INFO 2026-06-08 08:54:01 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr14:20,457,073 INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 664254 as yet unmatched pairs. 37308 records in RAM. INFO 2026-06-08 08:54:03 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr14:22,875,486 INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 661562 as yet unmatched pairs. 34616 records in RAM. INFO 2026-06-08 08:54:04 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr14:24,189,448 INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 658630 as yet unmatched pairs. 31681 records in RAM. INFO 2026-06-08 08:54:06 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr14:35,685,097 INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 656120 as yet unmatched pairs. 29167 records in RAM. INFO 2026-06-08 08:54:08 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr14:52,713,956 INFO 2026-06-08 08:54:08 MarkDuplicates Tracking 653705 as yet unmatched pairs. 26745 records in RAM. INFO 2026-06-08 08:54:09 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr14:64,029,911 INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 651247 as yet unmatched pairs. 24286 records in RAM. INFO 2026-06-08 08:54:11 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr14:67,777,656 INFO 2026-06-08 08:54:11 MarkDuplicates Tracking 648595 as yet unmatched pairs. 21633 records in RAM. INFO 2026-06-08 08:54:12 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr14:73,105,912 INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 645952 as yet unmatched pairs. 18988 records in RAM. INFO 2026-06-08 08:54:14 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 2s. Last read position: chr14:74,781,436 INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 643308 as yet unmatched pairs. 16343 records in RAM. INFO 2026-06-08 08:54:16 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr14:88,704,966 INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 640794 as yet unmatched pairs. 13818 records in RAM. INFO 2026-06-08 08:54:18 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr14:94,378,497 INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 639358 as yet unmatched pairs. 12369 records in RAM. INFO 2026-06-08 08:54:19 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr14:95,204,334 INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 635573 as yet unmatched pairs. 8584 records in RAM. INFO 2026-06-08 08:54:21 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr14:102,083,051 INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 632891 as yet unmatched pairs. 5832 records in RAM. INFO 2026-06-08 08:54:23 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr14:104,714,199 INFO 2026-06-08 08:54:23 MarkDuplicates Tracking 629681 as yet unmatched pairs. 2620 records in RAM. INFO 2026-06-08 08:54:24 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr15:22,524,146 INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 626959 as yet unmatched pairs. 38917 records in RAM. INFO 2026-06-08 08:54:26 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr15:30,942,890 INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 624855 as yet unmatched pairs. 36801 records in RAM. INFO 2026-06-08 08:54:27 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr15:39,582,330 INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 622978 as yet unmatched pairs. 34921 records in RAM. INFO 2026-06-08 08:54:29 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr15:40,751,996 INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 619910 as yet unmatched pairs. 31846 records in RAM. INFO 2026-06-08 08:54:30 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr15:43,105,977 INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 617236 as yet unmatched pairs. 29166 records in RAM. INFO 2026-06-08 08:54:32 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr15:44,584,032 INFO 2026-06-08 08:54:32 MarkDuplicates Tracking 615088 as yet unmatched pairs. 27016 records in RAM. INFO 2026-06-08 08:54:33 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr15:51,723,536 INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 612212 as yet unmatched pairs. 24140 records in RAM. INFO 2026-06-08 08:54:35 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr15:60,347,545 INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 610133 as yet unmatched pairs. 22058 records in RAM. INFO 2026-06-08 08:54:36 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr15:64,593,288 INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 607190 as yet unmatched pairs. 19114 records in RAM. INFO 2026-06-08 08:54:38 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr15:69,452,869 INFO 2026-06-08 08:54:38 MarkDuplicates Tracking 604872 as yet unmatched pairs. 16787 records in RAM. INFO 2026-06-08 08:54:40 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr15:73,702,517 INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 602181 as yet unmatched pairs. 14095 records in RAM. INFO 2026-06-08 08:54:41 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr15:75,207,167 INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 599123 as yet unmatched pairs. 11032 records in RAM. INFO 2026-06-08 08:54:43 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 2s. Last read position: chr15:80,181,048 INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 596344 as yet unmatched pairs. 8250 records in RAM. INFO 2026-06-08 08:54:45 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr15:84,935,164 INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 594174 as yet unmatched pairs. 6073 records in RAM. INFO 2026-06-08 08:54:46 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr15:90,388,335 INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 591762 as yet unmatched pairs. 3661 records in RAM. INFO 2026-06-08 08:54:48 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr15:99,255,980 INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 588892 as yet unmatched pairs. 789 records in RAM. INFO 2026-06-08 08:54:50 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 2s. Last read position: chr16:377,793 INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 586188 as yet unmatched pairs. 93804 records in RAM. INFO 2026-06-08 08:54:52 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr16:1,147,520 INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 582692 as yet unmatched pairs. 90304 records in RAM. INFO 2026-06-08 08:54:53 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr16:1,791,948 INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 579472 as yet unmatched pairs. 87082 records in RAM. INFO 2026-06-08 08:54:55 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr16:2,102,915 INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 576116 as yet unmatched pairs. 83725 records in RAM. INFO 2026-06-08 08:54:56 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr16:2,757,841 INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 573084 as yet unmatched pairs. 80689 records in RAM. INFO 2026-06-08 08:54:58 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr16:2,772,004 INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 571521 as yet unmatched pairs. 79126 records in RAM. INFO 2026-06-08 08:54:59 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr16:3,728,182 INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 567568 as yet unmatched pairs. 75173 records in RAM. INFO 2026-06-08 08:55:01 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr16:4,795,723 INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 565180 as yet unmatched pairs. 72783 records in RAM. INFO 2026-06-08 08:55:02 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr16:11,178,445 INFO 2026-06-08 08:55:02 MarkDuplicates Tracking 561933 as yet unmatched pairs. 69530 records in RAM. INFO 2026-06-08 08:55:04 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr16:14,724,586 INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 559587 as yet unmatched pairs. 67183 records in RAM. INFO 2026-06-08 08:55:06 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr16:15,061,773 INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 558256 as yet unmatched pairs. 65850 records in RAM. INFO 2026-06-08 08:55:07 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr16:16,316,748 INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 556291 as yet unmatched pairs. 63884 records in RAM. INFO 2026-06-08 08:55:09 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr16:18,342,738 INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 555558 as yet unmatched pairs. 63150 records in RAM. INFO 2026-06-08 08:55:10 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr16:18,783,068 INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 555732 as yet unmatched pairs. 63323 records in RAM. INFO 2026-06-08 08:55:11 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr16:21,250,297 INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 552056 as yet unmatched pairs. 59647 records in RAM. INFO 2026-06-08 08:55:12 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr16:21,452,610 INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 551487 as yet unmatched pairs. 59078 records in RAM. INFO 2026-06-08 08:55:14 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr16:21,851,116 INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 550576 as yet unmatched pairs. 58164 records in RAM. INFO 2026-06-08 08:55:15 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr16:22,533,759 INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 549694 as yet unmatched pairs. 57278 records in RAM. INFO 2026-06-08 08:55:16 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr16:23,710,913 INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 548284 as yet unmatched pairs. 55868 records in RAM. INFO 2026-06-08 08:55:18 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr16:28,383,410 INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 545922 as yet unmatched pairs. 53502 records in RAM. INFO 2026-06-08 08:55:19 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr16:28,723,314 INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 543843 as yet unmatched pairs. 51422 records in RAM. INFO 2026-06-08 08:55:21 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr16:28,983,820 INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 541430 as yet unmatched pairs. 49007 records in RAM. INFO 2026-06-08 08:55:22 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:29,484,145 INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 540791 as yet unmatched pairs. 48367 records in RAM. INFO 2026-06-08 08:55:23 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr16:29,833,765 INFO 2026-06-08 08:55:23 MarkDuplicates Tracking 538894 as yet unmatched pairs. 46469 records in RAM. INFO 2026-06-08 08:55:25 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:30,070,186 INFO 2026-06-08 08:55:25 MarkDuplicates Tracking 535738 as yet unmatched pairs. 43312 records in RAM. INFO 2026-06-08 08:55:26 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr16:30,239,324 INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 534224 as yet unmatched pairs. 41797 records in RAM. INFO 2026-06-08 08:55:27 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:30,723,698 INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 531582 as yet unmatched pairs. 39155 records in RAM. INFO 2026-06-08 08:55:29 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr16:31,132,128 INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 528925 as yet unmatched pairs. 36492 records in RAM. INFO 2026-06-08 08:55:30 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr16:31,474,646 INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 525892 as yet unmatched pairs. 33459 records in RAM. INFO 2026-06-08 08:55:32 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr16:51,645,905 INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 523270 as yet unmatched pairs. 30814 records in RAM. INFO 2026-06-08 08:55:34 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr16:56,609,025 INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 522883 as yet unmatched pairs. 30423 records in RAM. INFO 2026-06-08 08:55:36 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 2s. Last read position: chr16:66,566,054 INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 517991 as yet unmatched pairs. 25527 records in RAM. INFO 2026-06-08 08:55:38 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 2s. Last read position: chr16:67,951,931 INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 515000 as yet unmatched pairs. 22536 records in RAM. INFO 2026-06-08 08:55:40 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:69,756,549 INFO 2026-06-08 08:55:40 MarkDuplicates Tracking 512190 as yet unmatched pairs. 19725 records in RAM. INFO 2026-06-08 08:55:41 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:71,927,724 INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 509846 as yet unmatched pairs. 17378 records in RAM. INFO 2026-06-08 08:55:43 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:72,060,569 INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 509101 as yet unmatched pairs. 16633 records in RAM. INFO 2026-06-08 08:55:44 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:75,236,894 INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 505882 as yet unmatched pairs. 13403 records in RAM. INFO 2026-06-08 08:55:45 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr16:84,976,362 INFO 2026-06-08 08:55:45 MarkDuplicates Tracking 502922 as yet unmatched pairs. 10423 records in RAM. INFO 2026-06-08 08:55:47 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:88,027,580 INFO 2026-06-08 08:55:47 MarkDuplicates Tracking 500021 as yet unmatched pairs. 7512 records in RAM. INFO 2026-06-08 08:55:48 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:88,859,933 INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 497037 as yet unmatched pairs. 4524 records in RAM. INFO 2026-06-08 08:55:50 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr16:89,694,936 INFO 2026-06-08 08:55:50 MarkDuplicates Tracking 493957 as yet unmatched pairs. 1443 records in RAM. INFO 2026-06-08 08:55:53 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 2s. Last read position: chr17:1,361,264 INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 491605 as yet unmatched pairs. 141692 records in RAM. INFO 2026-06-08 08:55:54 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr17:2,042,049 INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 488356 as yet unmatched pairs. 138442 records in RAM. INFO 2026-06-08 08:55:56 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr17:4,542,421 INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 485308 as yet unmatched pairs. 135393 records in RAM. INFO 2026-06-08 08:55:57 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr17:5,455,227 INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 482367 as yet unmatched pairs. 132451 records in RAM. INFO 2026-06-08 08:55:59 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 2s. Last read position: chr17:7,415,538 INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 479421 as yet unmatched pairs. 129504 records in RAM. INFO 2026-06-08 08:56:02 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 2s. Last read position: chr17:7,856,730 INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 477087 as yet unmatched pairs. 127170 records in RAM. INFO 2026-06-08 08:56:04 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr17:15,945,300 INFO 2026-06-08 08:56:04 MarkDuplicates Tracking 474275 as yet unmatched pairs. 124350 records in RAM. INFO 2026-06-08 08:56:05 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr17:17,522,348 INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 471609 as yet unmatched pairs. 121682 records in RAM. INFO 2026-06-08 08:56:07 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr17:19,446,748 INFO 2026-06-08 08:56:07 MarkDuplicates Tracking 468859 as yet unmatched pairs. 118932 records in RAM. INFO 2026-06-08 08:56:08 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr17:28,348,206 INFO 2026-06-08 08:56:08 MarkDuplicates Tracking 466574 as yet unmatched pairs. 116646 records in RAM. INFO 2026-06-08 08:56:10 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr17:28,748,366 INFO 2026-06-08 08:56:10 MarkDuplicates Tracking 464110 as yet unmatched pairs. 114182 records in RAM. INFO 2026-06-08 08:56:11 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr17:30,731,983 INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 461572 as yet unmatched pairs. 111641 records in RAM. INFO 2026-06-08 08:56:13 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr17:34,961,864 INFO 2026-06-08 08:56:13 MarkDuplicates Tracking 459059 as yet unmatched pairs. 109119 records in RAM. INFO 2026-06-08 08:56:14 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr17:36,513,456 INFO 2026-06-08 08:56:14 MarkDuplicates Tracking 456638 as yet unmatched pairs. 106696 records in RAM. INFO 2026-06-08 08:56:16 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr17:38,722,711 INFO 2026-06-08 08:56:16 MarkDuplicates Tracking 454455 as yet unmatched pairs. 104513 records in RAM. INFO 2026-06-08 08:56:17 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr17:39,447,891 INFO 2026-06-08 08:56:17 MarkDuplicates Tracking 451782 as yet unmatched pairs. 101840 records in RAM. INFO 2026-06-08 08:56:19 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:39,723,999 INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 449079 as yet unmatched pairs. 99137 records in RAM. INFO 2026-06-08 08:56:21 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr17:40,390,025 INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 446389 as yet unmatched pairs. 96446 records in RAM. INFO 2026-06-08 08:56:22 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr17:41,901,768 INFO 2026-06-08 08:56:22 MarkDuplicates Tracking 443463 as yet unmatched pairs. 93520 records in RAM. INFO 2026-06-08 08:56:24 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr17:42,793,645 INFO 2026-06-08 08:56:24 MarkDuplicates Tracking 440681 as yet unmatched pairs. 90738 records in RAM. INFO 2026-06-08 08:56:26 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr17:44,148,077 INFO 2026-06-08 08:56:26 MarkDuplicates Tracking 437830 as yet unmatched pairs. 87885 records in RAM. INFO 2026-06-08 08:56:28 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 2s. Last read position: chr17:45,395,531 INFO 2026-06-08 08:56:28 MarkDuplicates Tracking 435057 as yet unmatched pairs. 85108 records in RAM. INFO 2026-06-08 08:56:29 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr17:47,531,533 INFO 2026-06-08 08:56:29 MarkDuplicates Tracking 433037 as yet unmatched pairs. 83087 records in RAM. INFO 2026-06-08 08:56:31 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr17:48,622,950 INFO 2026-06-08 08:56:31 MarkDuplicates Tracking 430460 as yet unmatched pairs. 80502 records in RAM. INFO 2026-06-08 08:56:33 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,938 INFO 2026-06-08 08:56:33 MarkDuplicates Tracking 430006 as yet unmatched pairs. 80047 records in RAM. INFO 2026-06-08 08:56:34 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,486 INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 429272 as yet unmatched pairs. 79313 records in RAM. INFO 2026-06-08 08:56:36 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,618 INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 426823 as yet unmatched pairs. 76864 records in RAM. INFO 2026-06-08 08:56:37 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,479 INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 422657 as yet unmatched pairs. 72698 records in RAM. INFO 2026-06-08 08:56:39 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,097 INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 422378 as yet unmatched pairs. 72418 records in RAM. INFO 2026-06-08 08:56:41 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,980 INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 417141 as yet unmatched pairs. 67181 records in RAM. INFO 2026-06-08 08:56:42 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,962 INFO 2026-06-08 08:56:42 MarkDuplicates Tracking 414095 as yet unmatched pairs. 64135 records in RAM. INFO 2026-06-08 08:57:41 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 58s. Last read position: chr17:50,194,601 INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 410250 as yet unmatched pairs. 60287 records in RAM. INFO 2026-06-08 08:58:46 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:17:15s. Time for last 1,000,000: 65s. Last read position: chr17:50,195,602 INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 413255 as yet unmatched pairs. 63291 records in RAM. INFO 2026-06-08 08:58:48 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,502 INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 407582 as yet unmatched pairs. 57617 records in RAM. INFO 2026-06-08 08:58:50 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 2s. Last read position: chr17:50,198,178 INFO 2026-06-08 08:58:50 MarkDuplicates Tracking 400930 as yet unmatched pairs. 50965 records in RAM. INFO 2026-06-08 08:58:52 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,814 INFO 2026-06-08 08:58:52 MarkDuplicates Tracking 394203 as yet unmatched pairs. 44237 records in RAM. INFO 2026-06-08 08:58:53 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,995,100 INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 390551 as yet unmatched pairs. 40585 records in RAM. INFO 2026-06-08 08:58:54 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 1s. Last read position: chr17:58,354,812 INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 387972 as yet unmatched pairs. 38006 records in RAM. INFO 2026-06-08 08:58:56 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr17:59,679,441 INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 385401 as yet unmatched pairs. 35435 records in RAM. INFO 2026-06-08 08:58:57 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr17:63,200,767 INFO 2026-06-08 08:58:57 MarkDuplicates Tracking 382632 as yet unmatched pairs. 32664 records in RAM. INFO 2026-06-08 08:58:59 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr17:65,530,008 INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 380121 as yet unmatched pairs. 30150 records in RAM. INFO 2026-06-08 08:59:00 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 1s. Last read position: chr17:68,527,878 INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 377758 as yet unmatched pairs. 27782 records in RAM. INFO 2026-06-08 08:59:02 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 1s. Last read position: chr17:75,100,584 INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 374836 as yet unmatched pairs. 24846 records in RAM. INFO 2026-06-08 08:59:03 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr17:75,611,644 INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 372302 as yet unmatched pairs. 22311 records in RAM. INFO 2026-06-08 08:59:05 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr17:75,824,272 INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 369010 as yet unmatched pairs. 19018 records in RAM. INFO 2026-06-08 08:59:06 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr17:77,402,524 INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 365964 as yet unmatched pairs. 15970 records in RAM. INFO 2026-06-08 08:59:08 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr17:79,085,693 INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 363243 as yet unmatched pairs. 13248 records in RAM. INFO 2026-06-08 08:59:09 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr17:80,880,419 INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 360312 as yet unmatched pairs. 10315 records in RAM. INFO 2026-06-08 08:59:11 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 2s. Last read position: chr17:81,695,800 INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 357252 as yet unmatched pairs. 7253 records in RAM. INFO 2026-06-08 08:59:13 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:82,028,612 INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 354082 as yet unmatched pairs. 4082 records in RAM. INFO 2026-06-08 08:59:15 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr17:82,520,054 INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 351033 as yet unmatched pairs. 1031 records in RAM. INFO 2026-06-08 08:59:16 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr18:9,549,319 INFO 2026-06-08 08:59:16 MarkDuplicates Tracking 348390 as yet unmatched pairs. 8336 records in RAM. INFO 2026-06-08 08:59:18 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 2s. Last read position: chr18:31,531,230 INFO 2026-06-08 08:59:18 MarkDuplicates Tracking 345939 as yet unmatched pairs. 5876 records in RAM. INFO 2026-06-08 08:59:20 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr18:50,275,152 INFO 2026-06-08 08:59:20 MarkDuplicates Tracking 343759 as yet unmatched pairs. 3689 records in RAM. INFO 2026-06-08 08:59:21 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr18:74,559,347 INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 341068 as yet unmatched pairs. 996 records in RAM. INFO 2026-06-08 08:59:24 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 3s. Last read position: chr19:757,957 INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 337938 as yet unmatched pairs. 144892 records in RAM. INFO 2026-06-08 08:59:26 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr19:1,112,040 INFO 2026-06-08 08:59:26 MarkDuplicates Tracking 334596 as yet unmatched pairs. 141549 records in RAM. INFO 2026-06-08 08:59:27 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 1s. Last read position: chr19:1,556,609 INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 331201 as yet unmatched pairs. 138154 records in RAM. INFO 2026-06-08 08:59:29 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr19:2,248,428 INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 328078 as yet unmatched pairs. 135030 records in RAM. INFO 2026-06-08 08:59:30 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr19:3,653,441 INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 324786 as yet unmatched pairs. 131736 records in RAM. INFO 2026-06-08 08:59:32 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr19:4,555,440 INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 321501 as yet unmatched pairs. 128449 records in RAM. INFO 2026-06-08 08:59:33 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr19:5,711,990 INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 318541 as yet unmatched pairs. 125487 records in RAM. INFO 2026-06-08 08:59:35 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr19:6,679,414 INFO 2026-06-08 08:59:35 MarkDuplicates Tracking 315664 as yet unmatched pairs. 122610 records in RAM. INFO 2026-06-08 08:59:37 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr19:6,763,684 INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 312721 as yet unmatched pairs. 119667 records in RAM. INFO 2026-06-08 08:59:38 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr19:8,324,686 INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 309719 as yet unmatched pairs. 116665 records in RAM. INFO 2026-06-08 08:59:40 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr19:10,284,517 INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 306667 as yet unmatched pairs. 113613 records in RAM. INFO 2026-06-08 08:59:41 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr19:10,830,239 INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 303934 as yet unmatched pairs. 110880 records in RAM. INFO 2026-06-08 08:59:43 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr19:11,446,272 INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 301017 as yet unmatched pairs. 107962 records in RAM. INFO 2026-06-08 08:59:45 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 2s. Last read position: chr19:12,792,150 INFO 2026-06-08 08:59:45 MarkDuplicates Tracking 298789 as yet unmatched pairs. 105734 records in RAM. INFO 2026-06-08 08:59:47 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 2s. Last read position: chr19:13,765,955 INFO 2026-06-08 08:59:47 MarkDuplicates Tracking 295024 as yet unmatched pairs. 101969 records in RAM. INFO 2026-06-08 08:59:49 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr19:14,516,773 INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 293539 as yet unmatched pairs. 100483 records in RAM. INFO 2026-06-08 08:59:50 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr19:15,243,041 INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 288823 as yet unmatched pairs. 95767 records in RAM. INFO 2026-06-08 08:59:52 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr19:15,424,833 INFO 2026-06-08 08:59:52 MarkDuplicates Tracking 286306 as yet unmatched pairs. 93250 records in RAM. INFO 2026-06-08 08:59:53 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr19:17,172,939 INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 283315 as yet unmatched pairs. 90255 records in RAM. INFO 2026-06-08 08:59:55 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr19:17,861,408 INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 281142 as yet unmatched pairs. 88069 records in RAM. INFO 2026-06-08 08:59:56 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr19:18,541,839 INFO 2026-06-08 08:59:56 MarkDuplicates Tracking 277113 as yet unmatched pairs. 84037 records in RAM. INFO 2026-06-08 08:59:58 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr19:19,146,856 INFO 2026-06-08 08:59:58 MarkDuplicates Tracking 273802 as yet unmatched pairs. 80725 records in RAM. INFO 2026-06-08 08:59:59 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr19:32,643,440 INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 271288 as yet unmatched pairs. 78209 records in RAM. INFO 2026-06-08 09:00:01 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr19:35,116,307 INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 268466 as yet unmatched pairs. 75386 records in RAM. INFO 2026-06-08 09:00:02 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr19:35,654,642 INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 265839 as yet unmatched pairs. 72759 records in RAM. INFO 2026-06-08 09:00:04 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr19:38,264,987 INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 262720 as yet unmatched pairs. 69640 records in RAM. INFO 2026-06-08 09:00:06 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr19:38,726,977 INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 259403 as yet unmatched pairs. 66323 records in RAM. INFO 2026-06-08 09:00:08 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 2s. Last read position: chr19:39,407,885 INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 256405 as yet unmatched pairs. 63324 records in RAM. INFO 2026-06-08 09:00:10 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr19:39,889,527 INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 253652 as yet unmatched pairs. 60571 records in RAM. INFO 2026-06-08 09:00:11 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr19:40,458,456 INFO 2026-06-08 09:00:11 MarkDuplicates Tracking 250886 as yet unmatched pairs. 57805 records in RAM. INFO 2026-06-08 09:00:12 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:41,205,965 INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 248126 as yet unmatched pairs. 55045 records in RAM. INFO 2026-06-08 09:00:14 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr19:41,708,737 INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 246691 as yet unmatched pairs. 53610 records in RAM. INFO 2026-06-08 09:00:15 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr19:41,715,112 INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 248137 as yet unmatched pairs. 55056 records in RAM. INFO 2026-06-08 09:00:17 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr19:41,717,653 INFO 2026-06-08 09:00:17 MarkDuplicates Tracking 243554 as yet unmatched pairs. 50473 records in RAM. INFO 2026-06-08 09:00:18 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr19:41,720,938 INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 238764 as yet unmatched pairs. 45683 records in RAM. INFO 2026-06-08 09:00:20 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr19:42,209,824 INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 235516 as yet unmatched pairs. 42432 records in RAM. INFO 2026-06-08 09:00:21 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr19:43,475,531 INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 232733 as yet unmatched pairs. 39605 records in RAM. INFO 2026-06-08 09:00:23 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr19:44,914,883 INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 230292 as yet unmatched pairs. 37164 records in RAM. INFO 2026-06-08 09:00:25 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr19:45,526,138 INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 226422 as yet unmatched pairs. 33288 records in RAM. INFO 2026-06-08 09:00:26 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr19:46,921,109 INFO 2026-06-08 09:00:26 MarkDuplicates Tracking 223162 as yet unmatched pairs. 30025 records in RAM. INFO 2026-06-08 09:00:28 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr19:48,240,961 INFO 2026-06-08 09:00:28 MarkDuplicates Tracking 220286 as yet unmatched pairs. 27147 records in RAM. INFO 2026-06-08 09:00:30 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 2s. Last read position: chr19:48,956,324 INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 217237 as yet unmatched pairs. 24097 records in RAM. INFO 2026-06-08 09:00:31 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr19:49,490,561 INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 214711 as yet unmatched pairs. 21571 records in RAM. INFO 2026-06-08 09:00:33 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr19:49,659,738 INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 211255 as yet unmatched pairs. 18115 records in RAM. INFO 2026-06-08 09:00:34 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:50,259,254 INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 208252 as yet unmatched pairs. 15110 records in RAM. INFO 2026-06-08 09:00:36 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr19:52,211,402 INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 204893 as yet unmatched pairs. 11751 records in RAM. INFO 2026-06-08 09:00:37 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr19:54,207,449 INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 202948 as yet unmatched pairs. 9805 records in RAM. INFO 2026-06-08 09:00:39 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr19:55,387,944 INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 200147 as yet unmatched pairs. 7003 records in RAM. INFO 2026-06-08 09:00:40 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr19:57,776,592 INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 195971 as yet unmatched pairs. 2827 records in RAM. INFO 2026-06-08 09:00:42 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr19:58,551,726 INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 193539 as yet unmatched pairs. 395 records in RAM. INFO 2026-06-08 09:00:44 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 2s. Last read position: chr20:3,796,611 INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 190429 as yet unmatched pairs. 42720 records in RAM. INFO 2026-06-08 09:00:45 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr20:17,621,713 INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 187823 as yet unmatched pairs. 40110 records in RAM. INFO 2026-06-08 09:00:47 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr20:21,161,981 INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 185256 as yet unmatched pairs. 37542 records in RAM. INFO 2026-06-08 09:00:49 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr20:25,278,435 INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 184205 as yet unmatched pairs. 36490 records in RAM. INFO 2026-06-08 09:00:50 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr20:32,157,758 INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 179570 as yet unmatched pairs. 31852 records in RAM. INFO 2026-06-08 09:00:52 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr20:34,292,395 INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 177012 as yet unmatched pairs. 29293 records in RAM. INFO 2026-06-08 09:00:54 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 2s. Last read position: chr20:35,548,820 INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 174237 as yet unmatched pairs. 26517 records in RAM. INFO 2026-06-08 09:00:56 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr20:36,815,203 INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 171644 as yet unmatched pairs. 23924 records in RAM. INFO 2026-06-08 09:00:57 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr20:41,404,694 INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 168922 as yet unmatched pairs. 21200 records in RAM. INFO 2026-06-08 09:00:59 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr20:45,330,509 INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 166783 as yet unmatched pairs. 19058 records in RAM. INFO 2026-06-08 09:01:00 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr20:46,009,965 INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 163509 as yet unmatched pairs. 15784 records in RAM. INFO 2026-06-08 09:01:02 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr20:49,373,572 INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 160950 as yet unmatched pairs. 13225 records in RAM. INFO 2026-06-08 09:01:03 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr20:53,576,495 INFO 2026-06-08 09:01:03 MarkDuplicates Tracking 158256 as yet unmatched pairs. 10529 records in RAM. INFO 2026-06-08 09:01:05 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr20:58,909,981 INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 155163 as yet unmatched pairs. 7427 records in RAM. INFO 2026-06-08 09:01:06 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr20:62,796,498 INFO 2026-06-08 09:01:06 MarkDuplicates Tracking 151812 as yet unmatched pairs. 4068 records in RAM. INFO 2026-06-08 09:01:08 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr20:63,735,350 INFO 2026-06-08 09:01:08 MarkDuplicates Tracking 148869 as yet unmatched pairs. 1123 records in RAM. INFO 2026-06-08 09:01:10 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 2s. Last read position: chr21:6,495,915 INFO 2026-06-08 09:01:10 MarkDuplicates Tracking 146977 as yet unmatched pairs. 39128 records in RAM. INFO 2026-06-08 09:01:11 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,059 INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 143875 as yet unmatched pairs. 35984 records in RAM. INFO 2026-06-08 09:01:12 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,874 INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 141780 as yet unmatched pairs. 33845 records in RAM. INFO 2026-06-08 09:01:13 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 0s. Last read position: chr21:8,258,959 INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 141661 as yet unmatched pairs. 33725 records in RAM. INFO 2026-06-08 09:01:14 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 0s. Last read position: chr21:8,397,738 INFO 2026-06-08 09:01:14 MarkDuplicates Tracking 140526 as yet unmatched pairs. 32587 records in RAM. INFO 2026-06-08 09:01:16 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,314 INFO 2026-06-08 09:01:16 MarkDuplicates Tracking 139157 as yet unmatched pairs. 31195 records in RAM. INFO 2026-06-08 09:01:17 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,961 INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 136473 as yet unmatched pairs. 28502 records in RAM. INFO 2026-06-08 09:01:18 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,335 INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 134748 as yet unmatched pairs. 26773 records in RAM. INFO 2026-06-08 09:01:19 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr21:17,565,486 INFO 2026-06-08 09:01:19 MarkDuplicates Tracking 134055 as yet unmatched pairs. 26079 records in RAM. INFO 2026-06-08 09:01:20 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr21:31,659,744 INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 131438 as yet unmatched pairs. 23461 records in RAM. INFO 2026-06-08 09:01:22 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr21:34,097,044 INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 128706 as yet unmatched pairs. 20729 records in RAM. INFO 2026-06-08 09:01:24 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr21:38,810,061 INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 127845 as yet unmatched pairs. 19868 records in RAM. INFO 2026-06-08 09:01:25 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr21:41,241,902 INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 123269 as yet unmatched pairs. 15291 records in RAM. INFO 2026-06-08 09:01:26 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr21:41,494,530 INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 121425 as yet unmatched pairs. 13447 records in RAM. INFO 2026-06-08 09:01:28 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 2s. Last read position: chr21:43,755,956 INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 117801 as yet unmatched pairs. 9823 records in RAM. INFO 2026-06-08 09:01:30 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr21:44,851,404 INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 114904 as yet unmatched pairs. 6924 records in RAM. INFO 2026-06-08 09:01:31 MarkDuplicates Read 642,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr21:45,981,859 INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 111370 as yet unmatched pairs. 3388 records in RAM. INFO 2026-06-08 09:01:34 MarkDuplicates Read 643,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 2s. Last read position: chr21:46,549,807 INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 108319 as yet unmatched pairs. 336 records in RAM. INFO 2026-06-08 09:01:36 MarkDuplicates Read 644,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 2s. Last read position: chr22:20,315,335 INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 105468 as yet unmatched pairs. 34581 records in RAM. INFO 2026-06-08 09:01:37 MarkDuplicates Read 645,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr22:23,289,578 INFO 2026-06-08 09:01:37 MarkDuplicates Tracking 102701 as yet unmatched pairs. 31814 records in RAM. INFO 2026-06-08 09:01:39 MarkDuplicates Read 646,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr22:24,862,569 INFO 2026-06-08 09:01:39 MarkDuplicates Tracking 99553 as yet unmatched pairs. 28666 records in RAM. INFO 2026-06-08 09:01:40 MarkDuplicates Read 647,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr22:29,298,799 INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 97192 as yet unmatched pairs. 26304 records in RAM. INFO 2026-06-08 09:01:42 MarkDuplicates Read 648,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr22:31,104,347 INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 94063 as yet unmatched pairs. 23175 records in RAM. INFO 2026-06-08 09:01:43 MarkDuplicates Read 649,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr22:36,285,120 INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 91451 as yet unmatched pairs. 20563 records in RAM. INFO 2026-06-08 09:01:45 MarkDuplicates Read 650,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr22:36,320,260 INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 88205 as yet unmatched pairs. 17317 records in RAM. INFO 2026-06-08 09:01:46 MarkDuplicates Read 651,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr22:37,805,956 INFO 2026-06-08 09:01:46 MarkDuplicates Tracking 85247 as yet unmatched pairs. 14359 records in RAM. INFO 2026-06-08 09:01:48 MarkDuplicates Read 652,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr22:39,521,510 INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 82375 as yet unmatched pairs. 11487 records in RAM. INFO 2026-06-08 09:01:49 MarkDuplicates Read 653,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr22:41,577,807 INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 79727 as yet unmatched pairs. 8839 records in RAM. INFO 2026-06-08 09:01:51 MarkDuplicates Read 654,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr22:43,180,925 INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 76994 as yet unmatched pairs. 6106 records in RAM. INFO 2026-06-08 09:01:52 MarkDuplicates Read 655,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr22:50,278,172 INFO 2026-06-08 09:01:52 MarkDuplicates Tracking 73952 as yet unmatched pairs. 3062 records in RAM. INFO 2026-06-08 09:01:55 MarkDuplicates Read 656,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 2s. Last read position: chrX:1,389,407 INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 70719 as yet unmatched pairs. 44759 records in RAM. INFO 2026-06-08 09:01:56 MarkDuplicates Read 657,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chrX:11,761,570 INFO 2026-06-08 09:01:56 MarkDuplicates Tracking 67646 as yet unmatched pairs. 41684 records in RAM. INFO 2026-06-08 09:01:58 MarkDuplicates Read 658,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chrX:19,965,546 INFO 2026-06-08 09:01:58 MarkDuplicates Tracking 65229 as yet unmatched pairs. 39206 records in RAM. INFO 2026-06-08 09:01:59 MarkDuplicates Read 659,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chrX:40,073,577 INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 62965 as yet unmatched pairs. 36938 records in RAM. INFO 2026-06-08 09:02:01 MarkDuplicates Read 660,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chrX:47,206,367 INFO 2026-06-08 09:02:01 MarkDuplicates Tracking 60518 as yet unmatched pairs. 34488 records in RAM. INFO 2026-06-08 09:02:02 MarkDuplicates Read 661,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chrX:48,576,572 INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 57831 as yet unmatched pairs. 31801 records in RAM. INFO 2026-06-08 09:02:04 MarkDuplicates Read 662,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chrX:51,744,255 INFO 2026-06-08 09:02:04 MarkDuplicates Tracking 54878 as yet unmatched pairs. 28848 records in RAM. INFO 2026-06-08 09:02:05 MarkDuplicates Read 663,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chrX:53,593,363 INFO 2026-06-08 09:02:05 MarkDuplicates Tracking 52359 as yet unmatched pairs. 26329 records in RAM. INFO 2026-06-08 09:02:07 MarkDuplicates Read 664,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chrX:67,546,515 INFO 2026-06-08 09:02:07 MarkDuplicates Tracking 49703 as yet unmatched pairs. 23672 records in RAM. INFO 2026-06-08 09:02:08 MarkDuplicates Read 665,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chrX:71,382,535 INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 47062 as yet unmatched pairs. 21031 records in RAM. INFO 2026-06-08 09:02:10 MarkDuplicates Read 666,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chrX:77,683,564 INFO 2026-06-08 09:02:10 MarkDuplicates Tracking 44738 as yet unmatched pairs. 18707 records in RAM. INFO 2026-06-08 09:02:11 MarkDuplicates Read 667,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chrX:101,391,793 INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 45259 as yet unmatched pairs. 19227 records in RAM. INFO 2026-06-08 09:02:13 MarkDuplicates Read 668,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chrX:119,236,484 INFO 2026-06-08 09:02:13 MarkDuplicates Tracking 40064 as yet unmatched pairs. 14031 records in RAM. INFO 2026-06-08 09:02:14 MarkDuplicates Read 669,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chrX:130,013,528 INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 37683 as yet unmatched pairs. 11650 records in RAM. INFO 2026-06-08 09:02:16 MarkDuplicates Read 670,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 2s. Last read position: chrX:150,218,160 INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 35176 as yet unmatched pairs. 9136 records in RAM. INFO 2026-06-08 09:02:18 MarkDuplicates Read 671,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chrX:153,951,963 INFO 2026-06-08 09:02:18 MarkDuplicates Tracking 32485 as yet unmatched pairs. 6440 records in RAM. INFO 2026-06-08 09:02:20 MarkDuplicates Read 672,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chrX:154,366,123 INFO 2026-06-08 09:02:20 MarkDuplicates Tracking 29676 as yet unmatched pairs. 3631 records in RAM. INFO 2026-06-08 09:02:21 MarkDuplicates Read 673,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chrX:154,653,341 INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 26828 as yet unmatched pairs. 783 records in RAM. INFO 2026-06-08 09:02:23 MarkDuplicates Read 674,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chrM:11,611 INFO 2026-06-08 09:02:23 MarkDuplicates Tracking 25115 as yet unmatched pairs. 327 records in RAM. INFO 2026-06-08 09:02:24 MarkDuplicates Read 675,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,168 INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 24652 as yet unmatched pairs. 3415 records in RAM. INFO 2026-06-08 09:02:25 MarkDuplicates Read 676,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 0s. Last read position: GL000220.1:115,554 INFO 2026-06-08 09:02:25 MarkDuplicates Tracking 21465 as yet unmatched pairs. 227 records in RAM. INFO 2026-06-08 09:02:26 MarkDuplicates Read 677,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 0s. Last read position: GL000220.1:158,114 INFO 2026-06-08 09:02:26 MarkDuplicates Tracking 21472 as yet unmatched pairs. 234 records in RAM. INFO 2026-06-08 09:02:27 MarkDuplicates Read 678,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 0s. Last read position: GL000220.1:158,174 INFO 2026-06-08 09:02:27 MarkDuplicates Tracking 21425 as yet unmatched pairs. 187 records in RAM. INFO 2026-06-08 09:02:28 MarkDuplicates Read 679,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 0s. Last read position: GL000220.1:160,753 INFO 2026-06-08 09:02:28 MarkDuplicates Tracking 21245 as yet unmatched pairs. 7 records in RAM. INFO 2026-06-08 09:02:29 MarkDuplicates Read 680,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,019 INFO 2026-06-08 09:02:29 MarkDuplicates Tracking 10700 as yet unmatched pairs. 10679 records in RAM. INFO 2026-06-08 09:02:31 MarkDuplicates Read 681,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: KI270733.1:132,408 INFO 2026-06-08 09:02:31 MarkDuplicates Tracking 1613 as yet unmatched pairs. 1592 records in RAM. INFO 2026-06-08 09:02:32 MarkDuplicates Read 682,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,052 INFO 2026-06-08 09:02:32 MarkDuplicates Tracking 488 as yet unmatched pairs. 467 records in RAM. INFO 2026-06-08 09:02:33 MarkDuplicates Read 683,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 0s. Last read position: KI270733.1:176,131 INFO 2026-06-08 09:02:33 MarkDuplicates Tracking 269 as yet unmatched pairs. 248 records in RAM. INFO 2026-06-08 09:02:34 MarkDuplicates Read 684,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,711 INFO 2026-06-08 09:02:34 MarkDuplicates Tracking 26 as yet unmatched pairs. 5 records in RAM. INFO 2026-06-08 09:02:34 MarkDuplicates Read 684169829 records. 0 pairs never matched. INFO 2026-06-08 09:03:22 MarkDuplicates After buildSortedReadEndLists freeMemory: 204140960; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:03:22 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk. INFO 2026-06-08 09:03:29 MarkDuplicates Traversing read pair information and detecting duplicates. WARNING 2026-06-08 09:03:29 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1176 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,038 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1055 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,802 INFO 2026-06-08 09:03:42 OpticalDuplicateFinder Large duplicate set. size = 2139 INFO 2026-06-08 09:03:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,080 INFO 2026-06-08 09:03:42 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,731 INFO 2026-06-08 09:03:42 OpticalDuplicateFinder Large duplicate set. size = 1286 INFO 2026-06-08 09:03:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,256 INFO 2026-06-08 09:03:42 OpticalDuplicateFinder Large duplicate set. size = 1068 INFO 2026-06-08 09:03:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,642 INFO 2026-06-08 09:03:42 OpticalDuplicateFinder Large duplicate set. size = 1051 INFO 2026-06-08 09:03:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,049 INFO 2026-06-08 09:03:42 OpticalDuplicateFinder Large duplicate set. size = 1364 INFO 2026-06-08 09:03:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,800 INFO 2026-06-08 09:03:43 OpticalDuplicateFinder Large duplicate set. size = 1391 INFO 2026-06-08 09:03:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,598 INFO 2026-06-08 09:03:43 OpticalDuplicateFinder Large duplicate set. size = 1060 INFO 2026-06-08 09:03:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,484 INFO 2026-06-08 09:03:43 OpticalDuplicateFinder Large duplicate set. size = 1186 INFO 2026-06-08 09:03:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,225 INFO 2026-06-08 09:03:43 OpticalDuplicateFinder Large duplicate set. size = 1234 INFO 2026-06-08 09:03:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,601 INFO 2026-06-08 09:03:43 OpticalDuplicateFinder Large duplicate set. size = 1044 INFO 2026-06-08 09:03:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,355 INFO 2026-06-08 09:03:43 OpticalDuplicateFinder Large duplicate set. size = 1022 INFO 2026-06-08 09:03:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,518 INFO 2026-06-08 09:03:43 OpticalDuplicateFinder Large duplicate set. size = 1283 INFO 2026-06-08 09:03:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,953 INFO 2026-06-08 09:03:44 OpticalDuplicateFinder Large duplicate set. size = 1016 INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,094 INFO 2026-06-08 09:03:44 OpticalDuplicateFinder Large duplicate set. size = 1045 INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,581 INFO 2026-06-08 09:03:44 OpticalDuplicateFinder Large duplicate set. size = 1261 INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,202 INFO 2026-06-08 09:03:44 OpticalDuplicateFinder Large duplicate set. size = 1404 INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,851 INFO 2026-06-08 09:03:44 OpticalDuplicateFinder Large duplicate set. size = 2211 INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,181 INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,329 INFO 2026-06-08 09:03:44 OpticalDuplicateFinder Large duplicate set. size = 1469 INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,631 INFO 2026-06-08 09:03:44 OpticalDuplicateFinder Large duplicate set. size = 1041 INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,895 INFO 2026-06-08 09:03:44 OpticalDuplicateFinder Large duplicate set. size = 1018 INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,874 INFO 2026-06-08 09:03:44 OpticalDuplicateFinder Large duplicate set. size = 1694 INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,895 INFO 2026-06-08 09:03:49 OpticalDuplicateFinder Large duplicate set. size = 1170 INFO 2026-06-08 09:03:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,667 INFO 2026-06-08 09:03:50 OpticalDuplicateFinder Large duplicate set. size = 1337 INFO 2026-06-08 09:03:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,794 INFO 2026-06-08 09:03:50 OpticalDuplicateFinder Large duplicate set. size = 1438 INFO 2026-06-08 09:03:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,319 INFO 2026-06-08 09:03:50 OpticalDuplicateFinder Large duplicate set. size = 1096 INFO 2026-06-08 09:03:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,918 INFO 2026-06-08 09:03:50 OpticalDuplicateFinder Large duplicate set. size = 1029 INFO 2026-06-08 09:03:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,015 INFO 2026-06-08 09:03:50 OpticalDuplicateFinder Large duplicate set. size = 1420 INFO 2026-06-08 09:03:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,027 INFO 2026-06-08 09:03:50 OpticalDuplicateFinder Large duplicate set. size = 1120 INFO 2026-06-08 09:03:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,627 INFO 2026-06-08 09:03:50 OpticalDuplicateFinder Large duplicate set. size = 1484 INFO 2026-06-08 09:03:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,791 INFO 2026-06-08 09:03:50 OpticalDuplicateFinder Large duplicate set. size = 1259 INFO 2026-06-08 09:03:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,613 INFO 2026-06-08 09:03:51 OpticalDuplicateFinder Large duplicate set. size = 1142 INFO 2026-06-08 09:03:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,769 INFO 2026-06-08 09:03:53 OpticalDuplicateFinder Large duplicate set. size = 1479 INFO 2026-06-08 09:03:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,224 INFO 2026-06-08 09:03:53 OpticalDuplicateFinder Large duplicate set. size = 1286 INFO 2026-06-08 09:03:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,119 INFO 2026-06-08 09:03:53 OpticalDuplicateFinder Large duplicate set. size = 1674 INFO 2026-06-08 09:03:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,675 INFO 2026-06-08 09:03:59 OpticalDuplicateFinder Large duplicate set. size = 2504 INFO 2026-06-08 09:03:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,023 INFO 2026-06-08 09:03:59 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,209 INFO 2026-06-08 09:03:59 OpticalDuplicateFinder Large duplicate set. size = 1028 INFO 2026-06-08 09:03:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,768 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder Large duplicate set. size = 1771 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,237 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder Large duplicate set. size = 1326 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,241 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder Large duplicate set. size = 1607 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,289 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder Large duplicate set. size = 1107 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,187 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder Large duplicate set. size = 1042 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,646 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder Large duplicate set. size = 1277 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,178 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder Large duplicate set. size = 1770 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,032 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder Large duplicate set. size = 2396 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,995 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,097 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder Large duplicate set. size = 1493 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,055 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder Large duplicate set. size = 1384 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,858 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder Large duplicate set. size = 1572 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,742 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder Large duplicate set. size = 1202 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,207 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder Large duplicate set. size = 1768 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,207 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder Large duplicate set. size = 2190 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,502 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,210 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder Large duplicate set. size = 1813 INFO 2026-06-08 09:04:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,477 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder Large duplicate set. size = 1516 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,594 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder Large duplicate set. size = 1085 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,451 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder Large duplicate set. size = 1713 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,514 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder Large duplicate set. size = 1126 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,384 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder Large duplicate set. size = 1048 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,156 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder Large duplicate set. size = 1022 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,065 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder Large duplicate set. size = 1027 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,746 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder Large duplicate set. size = 1036 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,220 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder Large duplicate set. size = 1102 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,089 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder Large duplicate set. size = 1062 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,885 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder Large duplicate set. size = 1071 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,671 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder Large duplicate set. size = 1055 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,335 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder Large duplicate set. size = 1577 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,259 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder Large duplicate set. size = 1092 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,607 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder Large duplicate set. size = 1758 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,036 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder Large duplicate set. size = 1303 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,353 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder Large duplicate set. size = 1038 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,330 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder Large duplicate set. size = 1850 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,772 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder Large duplicate set. size = 1884 INFO 2026-06-08 09:04:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,315 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1207 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,179 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1161 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,894 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1019 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,064 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1033 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,190 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1135 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,055 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1122 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,287 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1222 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,261 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1785 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,843 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1711 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,324 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 3232 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,661 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,713 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,804 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1227 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,382 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1855 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,125 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1792 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,008 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1581 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,361 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1090 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,733 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1498 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,067 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1316 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,005 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1885 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,682 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1944 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,603 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1018 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,256 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1062 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,280 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1139 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,502 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 2131 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,038 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,917 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1354 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,620 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1037 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,150 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1067 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,061 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder Large duplicate set. size = 1562 INFO 2026-06-08 09:04:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,059 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder Large duplicate set. size = 1047 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,046 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder Large duplicate set. size = 2171 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,636 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,115 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder Large duplicate set. size = 1041 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,361 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder Large duplicate set. size = 1166 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,843 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder Large duplicate set. size = 1106 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,448 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder Large duplicate set. size = 1278 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,153 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder Large duplicate set. size = 1223 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,165 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder Large duplicate set. size = 1965 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,825 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder Large duplicate set. size = 1129 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,377 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder Large duplicate set. size = 1210 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,299 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder Large duplicate set. size = 1927 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,260 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder Large duplicate set. size = 1005 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,803 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder Large duplicate set. size = 1347 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,894 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder Large duplicate set. size = 1448 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,857 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder Large duplicate set. size = 1291 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,368 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder Large duplicate set. size = 1001 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,782 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder Large duplicate set. size = 1196 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,190 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder Large duplicate set. size = 1140 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,335 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder Large duplicate set. size = 1053 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,668 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder Large duplicate set. size = 1068 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,087 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder Large duplicate set. size = 1154 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,147 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder Large duplicate set. size = 1178 INFO 2026-06-08 09:04:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,252 INFO 2026-06-08 09:04:05 OpticalDuplicateFinder Large duplicate set. size = 1231 INFO 2026-06-08 09:04:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,298 INFO 2026-06-08 09:04:05 OpticalDuplicateFinder Large duplicate set. size = 1096 INFO 2026-06-08 09:04:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,788 INFO 2026-06-08 09:04:05 OpticalDuplicateFinder Large duplicate set. size = 1201 INFO 2026-06-08 09:04:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,378 INFO 2026-06-08 09:04:05 OpticalDuplicateFinder Large duplicate set. size = 1168 INFO 2026-06-08 09:04:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,666 INFO 2026-06-08 09:04:05 OpticalDuplicateFinder Large duplicate set. size = 1375 INFO 2026-06-08 09:04:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,879 INFO 2026-06-08 09:04:05 OpticalDuplicateFinder Large duplicate set. size = 1837 INFO 2026-06-08 09:04:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,066 INFO 2026-06-08 09:04:05 OpticalDuplicateFinder Large duplicate set. size = 1043 INFO 2026-06-08 09:04:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,598 INFO 2026-06-08 09:04:13 OpticalDuplicateFinder Large duplicate set. size = 1249 INFO 2026-06-08 09:04:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,704 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder Large duplicate set. size = 1009 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,329 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder Large duplicate set. size = 1032 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,665 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder Large duplicate set. size = 1020 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,584 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder Large duplicate set. size = 1061 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,327 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder Large duplicate set. size = 1283 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,597 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder Large duplicate set. size = 1599 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,189 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder Large duplicate set. size = 1158 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,811 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder Large duplicate set. size = 2669 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,920 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,957 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder Large duplicate set. size = 1697 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,087 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder Large duplicate set. size = 2275 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,115 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,917 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder Large duplicate set. size = 1666 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,393 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder Large duplicate set. size = 1686 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,196 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder Large duplicate set. size = 1011 INFO 2026-06-08 09:04:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,505 INFO 2026-06-08 09:04:19 OpticalDuplicateFinder Large duplicate set. size = 1413 INFO 2026-06-08 09:04:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,458 INFO 2026-06-08 09:04:19 OpticalDuplicateFinder Large duplicate set. size = 1140 INFO 2026-06-08 09:04:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,497 INFO 2026-06-08 09:04:19 OpticalDuplicateFinder Large duplicate set. size = 1068 INFO 2026-06-08 09:04:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,748 INFO 2026-06-08 09:04:20 OpticalDuplicateFinder Large duplicate set. size = 1071 INFO 2026-06-08 09:04:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,807 INFO 2026-06-08 09:04:49 OpticalDuplicateFinder Large duplicate set. size = 1004 INFO 2026-06-08 09:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,743 INFO 2026-06-08 09:04:49 OpticalDuplicateFinder Large duplicate set. size = 1216 INFO 2026-06-08 09:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,170 INFO 2026-06-08 09:04:49 OpticalDuplicateFinder Large duplicate set. size = 1375 INFO 2026-06-08 09:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,766 INFO 2026-06-08 09:04:49 OpticalDuplicateFinder Large duplicate set. size = 1401 INFO 2026-06-08 09:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,944 INFO 2026-06-08 09:04:50 OpticalDuplicateFinder Large duplicate set. size = 1203 INFO 2026-06-08 09:04:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,950 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1156 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,258 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1205 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,969 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1035 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,290 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1218 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,190 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1113 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,372 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1079 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,330 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1180 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,790 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1585 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,630 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1121 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,207 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1088 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,013 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1172 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,664 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1038 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,332 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1017 INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,415 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder Large duplicate set. size = 1161 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,665 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder Large duplicate set. size = 1027 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,912 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder Large duplicate set. size = 1121 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,092 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder Large duplicate set. size = 1042 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,659 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder Large duplicate set. size = 1400 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,957 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder Large duplicate set. size = 1110 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,960 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder Large duplicate set. size = 1172 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,142 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder Large duplicate set. size = 1759 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,614 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder Large duplicate set. size = 1258 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,711 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder Large duplicate set. size = 1598 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,963 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder Large duplicate set. size = 1094 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,319 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder Large duplicate set. size = 1146 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,899 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder Large duplicate set. size = 1060 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,151 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder Large duplicate set. size = 1467 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,093 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder Large duplicate set. size = 2086 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,459 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,431 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder Large duplicate set. size = 2757 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,442 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,827 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder Large duplicate set. size = 1210 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,996 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder Large duplicate set. size = 1071 INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,020 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1136 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,226 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1243 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,276 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1530 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,927 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 2014 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,200 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,255 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1183 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,430 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1923 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,150 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 2526 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,893 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,957 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 2554 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,202 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,734 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1095 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,157 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1654 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,576 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1658 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,646 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1191 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,658 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1209 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,496 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1437 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,674 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1049 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,529 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1375 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,605 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 2815 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,234 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,396 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1001 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,470 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1147 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,438 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1408 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,781 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1246 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,693 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1058 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,790 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1030 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,200 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1139 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,144 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1407 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,574 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1055 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,363 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1092 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,038 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder Large duplicate set. size = 1475 INFO 2026-06-08 09:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,761 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder Large duplicate set. size = 1070 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,661 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder Large duplicate set. size = 1025 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,897 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder Large duplicate set. size = 1573 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,105 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder Large duplicate set. size = 1240 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,288 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder Large duplicate set. size = 1569 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,412 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder Large duplicate set. size = 1137 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,143 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder Large duplicate set. size = 1012 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,292 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder Large duplicate set. size = 1015 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,432 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder Large duplicate set. size = 1469 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,831 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder Large duplicate set. size = 1014 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,867 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder Large duplicate set. size = 1163 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,917 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder Large duplicate set. size = 1070 INFO 2026-06-08 09:05:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,655 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder Large duplicate set. size = 1866 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,035 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder Large duplicate set. size = 1109 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,768 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder Large duplicate set. size = 1076 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,314 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder Large duplicate set. size = 1894 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,676 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder Large duplicate set. size = 1158 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,722 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder Large duplicate set. size = 1024 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,863 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder Large duplicate set. size = 1177 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,691 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder Large duplicate set. size = 1034 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,909 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder Large duplicate set. size = 1705 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,647 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder Large duplicate set. size = 1389 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,571 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder Large duplicate set. size = 1029 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,198 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder Large duplicate set. size = 1265 INFO 2026-06-08 09:05:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,702 INFO 2026-06-08 09:05:12 OpticalDuplicateFinder Large duplicate set. size = 1325 INFO 2026-06-08 09:05:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,280 INFO 2026-06-08 09:05:12 OpticalDuplicateFinder Large duplicate set. size = 1118 INFO 2026-06-08 09:05:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,215 INFO 2026-06-08 09:05:12 OpticalDuplicateFinder Large duplicate set. size = 1417 INFO 2026-06-08 09:05:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,791 INFO 2026-06-08 09:05:12 OpticalDuplicateFinder Large duplicate set. size = 1594 INFO 2026-06-08 09:05:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,598 INFO 2026-06-08 09:05:12 OpticalDuplicateFinder Large duplicate set. size = 1441 INFO 2026-06-08 09:05:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,511 INFO 2026-06-08 09:05:12 OpticalDuplicateFinder Large duplicate set. size = 2438 INFO 2026-06-08 09:05:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,474 INFO 2026-06-08 09:05:12 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,155 INFO 2026-06-08 09:05:12 OpticalDuplicateFinder Large duplicate set. size = 1796 INFO 2026-06-08 09:05:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,742 INFO 2026-06-08 09:05:12 OpticalDuplicateFinder Large duplicate set. size = 1085 INFO 2026-06-08 09:05:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,060 INFO 2026-06-08 09:05:12 OpticalDuplicateFinder Large duplicate set. size = 1506 INFO 2026-06-08 09:05:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,799 INFO 2026-06-08 09:05:12 OpticalDuplicateFinder Large duplicate set. size = 1157 INFO 2026-06-08 09:05:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,205 INFO 2026-06-08 09:05:12 MarkDuplicates Traversing fragment information and detecting duplicates. WARNING 2026-06-08 09:05:12 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 09:06:07 MarkDuplicates Sorting list of duplicate records. INFO 2026-06-08 09:06:14 MarkDuplicates After generateDuplicateIndexes freeMemory: 203848488; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:06:14 MarkDuplicates Marking 398737071 records as duplicates. INFO 2026-06-08 09:06:14 MarkDuplicates Found 5519281 optical duplicate clusters. INFO 2026-06-08 09:06:14 MarkDuplicates Reads are assumed to be ordered by: coordinate INFO 2026-06-08 09:06:31 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:26,574,114 INFO 2026-06-08 09:06:48 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:34s. Time for last 10,000,000: 16s. Last read position: chr1:85,582,786 INFO 2026-06-08 09:07:05 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:51s. Time for last 10,000,000: 16s. Last read position: chr1:153,614,896 INFO 2026-06-08 09:07:22 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:08s. Time for last 10,000,000: 17s. Last read position: chr1:171,103,800 INFO 2026-06-08 09:07:39 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:25s. Time for last 10,000,000: 17s. Last read position: chr1:236,558,389 INFO 2026-06-08 09:07:56 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:42s. Time for last 10,000,000: 17s. Last read position: chr2:32,916,406 INFO 2026-06-08 09:08:13 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:59s. Time for last 10,000,000: 17s. Last read position: chr2:86,542,263 INFO 2026-06-08 09:08:31 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:17s. Time for last 10,000,000: 17s. Last read position: chr2:172,488,015 INFO 2026-06-08 09:08:48 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:34s. Time for last 10,000,000: 17s. Last read position: chr2:215,382,220 INFO 2026-06-08 09:09:06 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:51s. Time for last 10,000,000: 17s. Last read position: chr2:230,875,682 INFO 2026-06-08 09:09:23 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:08s. Time for last 10,000,000: 16s. Last read position: chr3:46,996,042 INFO 2026-06-08 09:09:40 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:25s. Time for last 10,000,000: 16s. Last read position: chr3:125,107,730 INFO 2026-06-08 09:09:57 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:42s. Time for last 10,000,000: 17s. Last read position: chr3:195,785,970 INFO 2026-06-08 09:10:15 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:00s. Time for last 10,000,000: 17s. Last read position: chr4:73,419,507 INFO 2026-06-08 09:10:33 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:19s. Time for last 10,000,000: 18s. Last read position: chr5:473,306 INFO 2026-06-08 09:10:52 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:38s. Time for last 10,000,000: 19s. Last read position: chr5:118,973,998 INFO 2026-06-08 09:11:12 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:58s. Time for last 10,000,000: 19s. Last read position: chr5:157,285,361 INFO 2026-06-08 09:11:29 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:15s. Time for last 10,000,000: 17s. Last read position: chr6:26,368,829 INFO 2026-06-08 09:11:46 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:32s. Time for last 10,000,000: 17s. Last read position: chr6:33,688,340 INFO 2026-06-08 09:12:04 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:50s. Time for last 10,000,000: 17s. Last read position: chr6:129,641,923 INFO 2026-06-08 09:12:21 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:07s. Time for last 10,000,000: 17s. Last read position: chr7:5,308,929 INFO 2026-06-08 09:12:38 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:24s. Time for last 10,000,000: 17s. Last read position: chr7:73,769,803 INFO 2026-06-08 09:12:55 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:41s. Time for last 10,000,000: 17s. Last read position: chr7:100,992,189 INFO 2026-06-08 09:13:12 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:58s. Time for last 10,000,000: 17s. Last read position: chr7:100,995,687 INFO 2026-06-08 09:13:30 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:15s. Time for last 10,000,000: 17s. Last read position: chr7:100,997,894 INFO 2026-06-08 09:13:47 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:32s. Time for last 10,000,000: 16s. Last read position: chr7:101,000,372 INFO 2026-06-08 09:14:04 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:49s. Time for last 10,000,000: 16s. Last read position: chr7:101,002,640 INFO 2026-06-08 09:14:21 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:06s. Time for last 10,000,000: 17s. Last read position: chr7:135,977,250 INFO 2026-06-08 09:14:38 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:24s. Time for last 10,000,000: 17s. Last read position: chr8:37,872,642 INFO 2026-06-08 09:14:58 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:44s. Time for last 10,000,000: 20s. Last read position: chr8:143,727,183 INFO 2026-06-08 09:15:18 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:03s. Time for last 10,000,000: 19s. Last read position: chr9:15,423,972 INFO 2026-06-08 09:15:38 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:24s. Time for last 10,000,000: 20s. Last read position: chr9:110,137,047 INFO 2026-06-08 09:15:57 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:43s. Time for last 10,000,000: 19s. Last read position: chr9:134,752,607 INFO 2026-06-08 09:16:17 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:10:03s. Time for last 10,000,000: 19s. Last read position: chr10:45,740,235 INFO 2026-06-08 09:16:38 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:23s. Time for last 10,000,000: 20s. Last read position: chr10:102,133,063 INFO 2026-06-08 09:16:55 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:41s. Time for last 10,000,000: 17s. Last read position: chr11:811,635 INFO 2026-06-08 09:17:12 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:58s. Time for last 10,000,000: 17s. Last read position: chr11:61,967,456 INFO 2026-06-08 09:17:29 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:15s. Time for last 10,000,000: 16s. Last read position: chr11:69,648,070 INFO 2026-06-08 09:17:46 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:32s. Time for last 10,000,000: 17s. Last read position: chr11:121,488,073 INFO 2026-06-08 09:18:03 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:49s. Time for last 10,000,000: 17s. Last read position: chr12:45,926,742 INFO 2026-06-08 09:18:20 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:06s. Time for last 10,000,000: 16s. Last read position: chr12:57,098,541 INFO 2026-06-08 09:18:37 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:23s. Time for last 10,000,000: 17s. Last read position: chr12:121,453,173 INFO 2026-06-08 09:18:54 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:40s. Time for last 10,000,000: 17s. Last read position: chr13:98,576,768 INFO 2026-06-08 09:19:11 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:57s. Time for last 10,000,000: 17s. Last read position: chr14:67,777,656 INFO 2026-06-08 09:19:28 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:14s. Time for last 10,000,000: 17s. Last read position: chr15:39,582,330 INFO 2026-06-08 09:19:46 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:32s. Time for last 10,000,000: 17s. Last read position: chr15:80,181,048 INFO 2026-06-08 09:20:03 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:48s. Time for last 10,000,000: 16s. Last read position: chr16:3,728,182 INFO 2026-06-08 09:20:20 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:06s. Time for last 10,000,000: 17s. Last read position: chr16:21,851,116 INFO 2026-06-08 09:20:37 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:22s. Time for last 10,000,000: 16s. Last read position: chr16:30,723,698 INFO 2026-06-08 09:20:54 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:39s. Time for last 10,000,000: 16s. Last read position: chr16:75,236,894 INFO 2026-06-08 09:21:10 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:56s. Time for last 10,000,000: 16s. Last read position: chr17:7,856,730 INFO 2026-06-08 09:21:27 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:13s. Time for last 10,000,000: 16s. Last read position: chr17:39,447,891 INFO 2026-06-08 09:21:44 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:30s. Time for last 10,000,000: 16s. Last read position: chr17:50,187,486 INFO 2026-06-08 09:22:01 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:47s. Time for last 10,000,000: 16s. Last read position: chr17:50,199,814 INFO 2026-06-08 09:22:18 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:16:04s. Time for last 10,000,000: 16s. Last read position: chr17:77,402,524 INFO 2026-06-08 09:22:35 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:21s. Time for last 10,000,000: 17s. Last read position: chr19:757,957 INFO 2026-06-08 09:22:52 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:37s. Time for last 10,000,000: 16s. Last read position: chr19:10,284,517 INFO 2026-06-08 09:23:08 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:54s. Time for last 10,000,000: 16s. Last read position: chr19:18,541,839 INFO 2026-06-08 09:23:25 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:17:11s. Time for last 10,000,000: 16s. Last read position: chr19:41,205,965 INFO 2026-06-08 09:23:42 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:28s. Time for last 10,000,000: 16s. Last read position: chr19:48,240,961 INFO 2026-06-08 09:23:59 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:44s. Time for last 10,000,000: 16s. Last read position: chr20:3,796,611 INFO 2026-06-08 09:24:15 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:18:01s. Time for last 10,000,000: 16s. Last read position: chr20:46,009,965 INFO 2026-06-08 09:24:31 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:18:17s. Time for last 10,000,000: 15s. Last read position: chr21:8,397,738 INFO 2026-06-08 09:24:47 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:18:33s. Time for last 10,000,000: 15s. Last read position: chr21:43,755,956 INFO 2026-06-08 09:25:05 MarkDuplicates Written 650,000,000 records. Elapsed time: 00:18:51s. Time for last 10,000,000: 17s. Last read position: chr22:36,320,260 INFO 2026-06-08 09:25:22 MarkDuplicates Written 660,000,000 records. Elapsed time: 00:19:08s. Time for last 10,000,000: 16s. Last read position: chrX:47,206,367 INFO 2026-06-08 09:25:39 MarkDuplicates Written 670,000,000 records. Elapsed time: 00:19:25s. Time for last 10,000,000: 16s. Last read position: chrX:150,218,160 INFO 2026-06-08 09:25:54 MarkDuplicates Written 680,000,000 records. Elapsed time: 00:19:40s. Time for last 10,000,000: 15s. Last read position: KI270733.1:131,019 INFO 2026-06-08 09:26:09 MarkDuplicates Writing complete. Closing input iterator. INFO 2026-06-08 09:26:09 MarkDuplicates Duplicate Index cleanup. INFO 2026-06-08 09:26:09 MarkDuplicates Getting Memory Stats. INFO 2026-06-08 09:26:09 MarkDuplicates Before output close freeMemory: 203813144; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:26:09 MarkDuplicates Closed outputs. Getting more Memory Stats. INFO 2026-06-08 09:26:09 MarkDuplicates After output close freeMemory: 104054728; totalMemory: 134217728; maxMemory: 63585648640 [Mon Jun 08 09:26:09 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 44.66 minutes. Runtime.totalMemory()=134217728 ls: *cram: No such file or directory ls: *.crai: No such file or directory