File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/f3e575c71de59cb169d1caf52b8c7d/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:35:04
                             Started mapping on |	Jun 08 10:41:45
                                    Finished on |	Jun 08 11:34:57
       Mapping speed, Million of reads per hour |	331.57

                          Number of input reads |	293991150
                      Average input read length |	267
                                    UNIQUE READS:
                   Uniquely mapped reads number |	278419944
                        Uniquely mapped reads % |	94.70%
                          Average mapped length |	266.48
                       Number of splices: Total |	330756175
            Number of splices: Annotated (sjdb) |	324287634
                       Number of splices: GT/AG |	327188952
                       Number of splices: GC/AG |	2300832
                       Number of splices: AT/AC |	314915
               Number of splices: Non-canonical |	951476
                      Mismatch rate per base, % |	0.18%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.73
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.71
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	11244013
             % of reads mapped to multiple loci |	3.82%
        Number of reads mapped to too many loci |	160544
             % of reads mapped to too many loci |	0.05%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	3790465
                 % of reads unmapped: too short |	1.29%
                Number of reads unmapped: other |	376184
                     % of reads unmapped: other |	0.13%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%