Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/84900063d864f0855f76846c7eee3c/1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/e72b9c62180e9cfc5d93bb0f8de581/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/e72b9c62180e9cfc5d93bb0f8de581/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/4ae57a790d79b95a1c08daa9f95515/1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (13344074) splicing reads. 236207 splicing junctions. 176693 known splicing junctions. 59514 novel splicing junctions.
sampling 10% (26688149) splicing reads. 282999 splicing junctions. 188817 known splicing junctions. 94182 novel splicing junctions.
sampling 15% (40032223) splicing reads. 315180 splicing junctions. 195476 known splicing junctions. 119704 novel splicing junctions.
sampling 20% (53376298) splicing reads. 339649 splicing junctions. 199698 known splicing junctions. 139951 novel splicing junctions.
sampling 25% (66720372) splicing reads. 359345 splicing junctions. 202784 known splicing junctions. 156561 novel splicing junctions.
sampling 30% (80064447) splicing reads. 375525 splicing junctions. 205132 known splicing junctions. 170393 novel splicing junctions.
sampling 35% (93408521) splicing reads. 389330 splicing junctions. 206956 known splicing junctions. 182374 novel splicing junctions.
sampling 40% (106752596) splicing reads. 400944 splicing junctions. 208416 known splicing junctions. 192528 novel splicing junctions.
sampling 45% (120096670) splicing reads. 410974 splicing junctions. 209682 known splicing junctions. 201292 novel splicing junctions.
sampling 50% (133440745) splicing reads. 419578 splicing junctions. 210687 known splicing junctions. 208891 novel splicing junctions.
sampling 55% (146784820) splicing reads. 426942 splicing junctions. 211497 known splicing junctions. 215445 novel splicing junctions.
sampling 60% (160128894) splicing reads. 433367 splicing junctions. 212211 known splicing junctions. 221156 novel splicing junctions.
sampling 65% (173472969) splicing reads. 438824 splicing junctions. 212808 known splicing junctions. 226016 novel splicing junctions.
sampling 70% (186817043) splicing reads. 443514 splicing junctions. 213304 known splicing junctions. 230210 novel splicing junctions.
sampling 75% (200161118) splicing reads. 447352 splicing junctions. 213734 known splicing junctions. 233618 novel splicing junctions.
sampling 80% (213505192) splicing reads. 450586 splicing junctions. 214066 known splicing junctions. 236520 novel splicing junctions.
sampling 85% (226849267) splicing reads. 453303 splicing junctions. 214343 known splicing junctions. 238960 novel splicing junctions.
sampling 90% (240193341) splicing reads. 455261 splicing junctions. 214549 known splicing junctions. 240712 novel splicing junctions.
sampling 95% (253537416) splicing reads. 456718 splicing junctions. 214698 known splicing junctions. 242020 novel splicing junctions.
sampling 100% (266881491) splicing reads. 457680 splicing junctions. 214805 known splicing junctions. 242875 novel splicing junctions.
null device 
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