Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/b25d5865da1c898c304c0f91a41671/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/55d4990929a49b1df9a5c04c10e423/1173_C31_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/b25d5865da1c898c304c0f91a41671/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/b74a88b22553b91638147acef41436/1173_C31_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 90700849
[W::hts_idx_load3] The index file is older than the data file: 1173_C31_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	90700849
Known Splicing Events:	89799781
Partial Novel Splicing Events:	409123
Novel Splicing Events:	463225
Filtered Splicing Events:	28720

Total splicing  Junctions:	344767
Known Splicing Junctions:	231713
Partial Novel Splicing Junctions:	72665
Novel Splicing Junctions:	40389

===================================================================
Create BED file ...
Create Interact file ...