Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/0b22fe6c769c8c652d5c195a60bafb/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/d7d2801b210e9db9056abad315e950/.command.sh
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/d7d2801b210e9db9056abad315e950/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1.md.bam --METRICS_FILE 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:43:33.117 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:43:33 GMT 2026] MarkDuplicates --INPUT 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1.md.bam --METRICS_FILE 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:43:33 GMT 2026] Executing as ?@nf-fbd7d2801b210e9db9056abad315e950-a0278-47h46 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:43:33 MarkDuplicates Start of doWork freeMemory: 105826872; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:43:33 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:43:33 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:43:37 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,522,869
INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 3229 as yet unmatched pairs. 105 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:6,529,096
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 6427 as yet unmatched pairs. 76 records in RAM.
INFO 2026-06-08 08:43:42 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:9,715,702
INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 9319 as yet unmatched pairs. 60 records in RAM.
INFO 2026-06-08 08:43:44 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:11,922,842
INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 12349 as yet unmatched pairs. 212 records in RAM.
INFO 2026-06-08 08:43:46 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:15,935,663
INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 15149 as yet unmatched pairs. 77 records in RAM.
INFO 2026-06-08 08:43:47 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:19,201,725
INFO 2026-06-08 08:43:47 MarkDuplicates Tracking 18506 as yet unmatched pairs. 823 records in RAM.
INFO 2026-06-08 08:43:50 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:21,842,348
INFO 2026-06-08 08:43:50 MarkDuplicates Tracking 21000 as yet unmatched pairs. 374 records in RAM.
INFO 2026-06-08 08:43:52 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:22,639,264
INFO 2026-06-08 08:43:52 MarkDuplicates Tracking 27421 as yet unmatched pairs. 3761 records in RAM.
INFO 2026-06-08 08:43:54 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:22,661,308
INFO 2026-06-08 08:43:54 MarkDuplicates Tracking 27571 as yet unmatched pairs. 819 records in RAM.
INFO 2026-06-08 08:43:56 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:25,823,643
INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 29607 as yet unmatched pairs. 165 records in RAM.
INFO 2026-06-08 08:43:57 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:27,358,504
INFO 2026-06-08 08:43:57 MarkDuplicates Tracking 32487 as yet unmatched pairs. 129 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:29,258,607
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 35818 as yet unmatched pairs. 572 records in RAM.
INFO 2026-06-08 08:44:00 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:32,334,753
INFO 2026-06-08 08:44:00 MarkDuplicates Tracking 38294 as yet unmatched pairs. 140 records in RAM.
INFO 2026-06-08 08:44:03 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:35,919,090
INFO 2026-06-08 08:44:03 MarkDuplicates Tracking 41193 as yet unmatched pairs. 168 records in RAM.
INFO 2026-06-08 08:44:05 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:39,370,087
INFO 2026-06-08 08:44:05 MarkDuplicates Tracking 44036 as yet unmatched pairs. 177 records in RAM.
INFO 2026-06-08 08:44:07 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:42,191,398
INFO 2026-06-08 08:44:07 MarkDuplicates Tracking 47007 as yet unmatched pairs. 357 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:43,984,921
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 50027 as yet unmatched pairs. 164 records in RAM.
INFO 2026-06-08 08:44:11 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:46,684,501
INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 53479 as yet unmatched pairs. 743 records in RAM.
INFO 2026-06-08 08:44:12 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:54,205,080
INFO 2026-06-08 08:44:12 MarkDuplicates Tracking 55749 as yet unmatched pairs. 269 records in RAM.
INFO 2026-06-08 08:44:14 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:64,866,884
INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 58999 as yet unmatched pairs. 764 records in RAM.
INFO 2026-06-08 08:44:15 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:81,979,925
INFO 2026-06-08 08:44:15 MarkDuplicates Tracking 61081 as yet unmatched pairs. 224 records in RAM.
INFO 2026-06-08 08:44:17 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 2s. Last read position: chr1:92,323,516
INFO 2026-06-08 08:44:17 MarkDuplicates Tracking 63896 as yet unmatched pairs. 283 records in RAM.
INFO 2026-06-08 08:44:20 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:107,573,295
INFO 2026-06-08 08:44:20 MarkDuplicates Tracking 66392 as yet unmatched pairs. 374 records in RAM.
INFO 2026-06-08 08:44:22 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:111,126,243
INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 69111 as yet unmatched pairs. 230 records in RAM.
INFO 2026-06-08 08:44:23 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:114,511,026
INFO 2026-06-08 08:44:23 MarkDuplicates Tracking 71729 as yet unmatched pairs. 137 records in RAM.
INFO 2026-06-08 08:44:25 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:119,759,979
INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 74424 as yet unmatched pairs. 143 records in RAM.
INFO 2026-06-08 08:44:26 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:121,374,824
INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 76537 as yet unmatched pairs. 206 records in RAM.
INFO 2026-06-08 08:44:27 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:146,147,612
INFO 2026-06-08 08:44:27 MarkDuplicates Tracking 78038 as yet unmatched pairs. 148 records in RAM.
INFO 2026-06-08 08:44:29 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:148,749,331
INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 79543 as yet unmatched pairs. 431 records in RAM.
INFO 2026-06-08 08:44:30 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:149,852,903
INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 81028 as yet unmatched pairs. 177 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:150,625,607
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 84079 as yet unmatched pairs. 645 records in RAM.
INFO 2026-06-08 08:44:34 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:151,527,038
INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 86253 as yet unmatched pairs. 145 records in RAM.
INFO 2026-06-08 08:44:35 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:153,991,158
INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 89854 as yet unmatched pairs. 905 records in RAM.
INFO 2026-06-08 08:44:37 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:154,275,397
INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 91736 as yet unmatched pairs. 234 records in RAM.
INFO 2026-06-08 08:44:38 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:155,187,279
INFO 2026-06-08 08:44:38 MarkDuplicates Tracking 95630 as yet unmatched pairs. 1212 records in RAM.
INFO 2026-06-08 08:44:40 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:155,438,604
INFO 2026-06-08 08:44:40 MarkDuplicates Tracking 97189 as yet unmatched pairs. 361 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:156,134,459
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 100483 as yet unmatched pairs. 892 records in RAM.
INFO 2026-06-08 08:44:43 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:156,807,274
INFO 2026-06-08 08:44:43 MarkDuplicates Tracking 102739 as yet unmatched pairs. 143 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:160,542,616
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 105500 as yet unmatched pairs. 172 records in RAM.
INFO 2026-06-08 08:44:46 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:161,542,556
INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 111351 as yet unmatched pairs. 3456 records in RAM.
INFO 2026-06-08 08:44:48 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 2s. Last read position: chr1:168,004,556
INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 110879 as yet unmatched pairs. 425 records in RAM.
INFO 2026-06-08 08:44:50 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:171,557,678
INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 113748 as yet unmatched pairs. 550 records in RAM.
INFO 2026-06-08 08:44:52 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:179,142,950
INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 116022 as yet unmatched pairs. 124 records in RAM.
INFO 2026-06-08 08:44:53 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:182,853,357
INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 119108 as yet unmatched pairs. 228 records in RAM.
INFO 2026-06-08 08:44:55 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 2s. Last read position: chr1:183,902,583
INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 121784 as yet unmatched pairs. 119 records in RAM.
INFO 2026-06-08 08:44:57 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:186,360,829
INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 125259 as yet unmatched pairs. 1021 records in RAM.
INFO 2026-06-08 08:44:59 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:200,911,547
INFO 2026-06-08 08:44:59 MarkDuplicates Tracking 127070 as yet unmatched pairs. 229 records in RAM.
INFO 2026-06-08 08:45:01 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:203,774,030
INFO 2026-06-08 08:45:01 MarkDuplicates Tracking 129808 as yet unmatched pairs. 104 records in RAM.
INFO 2026-06-08 08:45:03 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:205,620,301
INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 135286 as yet unmatched pairs. 2973 records in RAM.
INFO 2026-06-08 08:45:04 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:207,767,164
INFO 2026-06-08 08:45:04 MarkDuplicates Tracking 135239 as yet unmatched pairs. 570 records in RAM.
INFO 2026-06-08 08:45:06 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:215,620,506
INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 137404 as yet unmatched pairs. 45 records in RAM.
INFO 2026-06-08 08:45:07 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:225,507,986
INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 139980 as yet unmatched pairs. 99 records in RAM.
INFO 2026-06-08 08:45:09 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:228,264,113
INFO 2026-06-08 08:45:09 MarkDuplicates Tracking 142920 as yet unmatched pairs. 145 records in RAM.
INFO 2026-06-08 08:45:11 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:234,608,525
INFO 2026-06-08 08:45:11 MarkDuplicates Tracking 146259 as yet unmatched pairs. 247 records in RAM.
INFO 2026-06-08 08:45:12 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:244,855,445
INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 149149 as yet unmatched pairs. 573 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 2s. Last read position: chr2:8,682,224
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 151527 as yet unmatched pairs. 146503 records in RAM.
INFO 2026-06-08 08:45:17 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr2:20,033,194
INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 154464 as yet unmatched pairs. 149307 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr2:24,842,304
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 157391 as yet unmatched pairs. 152131 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr2:27,650,127
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 160189 as yet unmatched pairs. 154861 records in RAM.
INFO 2026-06-08 08:45:22 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:32,545,724
INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 163003 as yet unmatched pairs. 157564 records in RAM.
INFO 2026-06-08 08:45:23 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,263
INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 254340 as yet unmatched pairs. 153369 records in RAM.
INFO 2026-06-08 08:45:25 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 886137 as yet unmatched pairs. 127588 records in RAM.
INFO 2026-06-08 08:45:27 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,401
INFO 2026-06-08 08:45:27 MarkDuplicates Tracking 1420199 as yet unmatched pairs. 105322 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 1447594 as yet unmatched pairs. 104020 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:32,947,341
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 1543201 as yet unmatched pairs. 100051 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:42,280,848
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 1541496 as yet unmatched pairs. 98242 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:44,201,732
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 1538269 as yet unmatched pairs. 94950 records in RAM.
INFO 2026-06-08 08:45:35 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:48,498,493
INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 1535390 as yet unmatched pairs. 91917 records in RAM.
INFO 2026-06-08 08:45:36 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:58,221,942
INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 1532927 as yet unmatched pairs. 89322 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:64,636,561
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 1530625 as yet unmatched pairs. 86857 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:69,820,743
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 1531585 as yet unmatched pairs. 87692 records in RAM.
INFO 2026-06-08 08:45:41 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:73,452,080
INFO 2026-06-08 08:45:41 MarkDuplicates Tracking 1525398 as yet unmatched pairs. 81411 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:75,654,742
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 1522790 as yet unmatched pairs. 78713 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr2:86,144,548
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 1520319 as yet unmatched pairs. 76115 records in RAM.
INFO 2026-06-08 08:45:47 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:88,857,359
INFO 2026-06-08 08:45:47 MarkDuplicates Tracking 1522650 as yet unmatched pairs. 78287 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:96,289,882
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 1516387 as yet unmatched pairs. 71869 records in RAM.
INFO 2026-06-08 08:45:50 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:100,104,384
INFO 2026-06-08 08:45:50 MarkDuplicates Tracking 1513693 as yet unmatched pairs. 69058 records in RAM.
INFO 2026-06-08 08:45:52 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr2:106,424,858
INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 1511119 as yet unmatched pairs. 66358 records in RAM.
INFO 2026-06-08 08:45:54 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:108,765,485
INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 1510368 as yet unmatched pairs. 65547 records in RAM.
INFO 2026-06-08 08:45:55 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:110,526,331
INFO 2026-06-08 08:45:55 MarkDuplicates Tracking 1508398 as yet unmatched pairs. 63542 records in RAM.
INFO 2026-06-08 08:45:57 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:112,390,985
INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 1506841 as yet unmatched pairs. 61913 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:113,218,058
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 1508915 as yet unmatched pairs. 63915 records in RAM.
INFO 2026-06-08 08:46:00 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:113,236,627
INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 1503904 as yet unmatched pairs. 58856 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:113,743,713
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 1502266 as yet unmatched pairs. 57122 records in RAM.
INFO 2026-06-08 08:46:04 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:127,338,932
INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 1496862 as yet unmatched pairs. 51571 records in RAM.
INFO 2026-06-08 08:46:06 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:130,345,882
INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 1494574 as yet unmatched pairs. 49203 records in RAM.
INFO 2026-06-08 08:46:07 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:135,782,758
INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 1492708 as yet unmatched pairs. 47235 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:151,678,095
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 1490371 as yet unmatched pairs. 44774 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:162,038,349
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 1488027 as yet unmatched pairs. 42253 records in RAM.
INFO 2026-06-08 08:46:12 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:172,476,476
INFO 2026-06-08 08:46:12 MarkDuplicates Tracking 1485923 as yet unmatched pairs. 40005 records in RAM.
INFO 2026-06-08 08:46:13 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:178,549,724
INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 1483319 as yet unmatched pairs. 37289 records in RAM.
INFO 2026-06-08 08:46:15 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:189,010,683
INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 1480936 as yet unmatched pairs. 34808 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 2s. Last read position: chr2:196,998,908
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 1478250 as yet unmatched pairs. 31991 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:202,291,124
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 1475896 as yet unmatched pairs. 29515 records in RAM.
INFO 2026-06-08 08:46:20 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:207,567,509
INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 1473782 as yet unmatched pairs. 27316 records in RAM.
INFO 2026-06-08 08:46:21 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,116
INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 1473950 as yet unmatched pairs. 27396 records in RAM.
INFO 2026-06-08 08:46:23 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:215,380,939
INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 1471925 as yet unmatched pairs. 25341 records in RAM.
INFO 2026-06-08 08:46:25 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:215,399,328
INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 1467844 as yet unmatched pairs. 21208 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:215,423,389
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 1464953 as yet unmatched pairs. 18279 records in RAM.
INFO 2026-06-08 08:46:28 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:217,818,581
INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 1461140 as yet unmatched pairs. 14385 records in RAM.
INFO 2026-06-08 08:46:30 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:219,253,256
INFO 2026-06-08 08:46:30 MarkDuplicates Tracking 1458264 as yet unmatched pairs. 11432 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:229,767,462
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 1455464 as yet unmatched pairs. 8473 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:231,712,877
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 1453015 as yet unmatched pairs. 5975 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:238,329,033
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 1450163 as yet unmatched pairs. 3019 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:241,872,710
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 1447267 as yet unmatched pairs. 15 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 2s. Last read position: chr3:9,780,429
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 1444707 as yet unmatched pairs. 85933 records in RAM.
INFO 2026-06-08 08:46:39 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr3:12,836,190
INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 1443594 as yet unmatched pairs. 84725 records in RAM.
INFO 2026-06-08 08:46:42 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr3:15,710,410
INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 1439242 as yet unmatched pairs. 80281 records in RAM.
INFO 2026-06-08 08:46:43 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:32,685,391
INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 1436987 as yet unmatched pairs. 77793 records in RAM.
INFO 2026-06-08 08:46:45 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr3:39,406,739
INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 1435138 as yet unmatched pairs. 75850 records in RAM.
INFO 2026-06-08 08:46:47 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr3:45,112,096
INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 1432056 as yet unmatched pairs. 72678 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 2s. Last read position: chr3:47,442,912
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 1429311 as yet unmatched pairs. 69840 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:48,847,486
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 1426448 as yet unmatched pairs. 66919 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:49,531,826
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 1423735 as yet unmatched pairs. 64107 records in RAM.
INFO 2026-06-08 08:46:54 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:51,393,319
INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 1420470 as yet unmatched pairs. 60769 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 2s. Last read position: chr3:52,563,479
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 1417875 as yet unmatched pairs. 58112 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:58,118,894
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 1415290 as yet unmatched pairs. 55391 records in RAM.
INFO 2026-06-08 08:47:00 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:69,047,940
INFO 2026-06-08 08:47:00 MarkDuplicates Tracking 1412807 as yet unmatched pairs. 52771 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:99,981,001
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 1410391 as yet unmatched pairs. 50242 records in RAM.
INFO 2026-06-08 08:47:04 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:101,853,448
INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 1408468 as yet unmatched pairs. 48249 records in RAM.
INFO 2026-06-08 08:47:06 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:113,809,342
INFO 2026-06-08 08:47:06 MarkDuplicates Tracking 1405803 as yet unmatched pairs. 45473 records in RAM.
INFO 2026-06-08 08:47:07 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:121,693,902
INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 1403427 as yet unmatched pairs. 42987 records in RAM.
INFO 2026-06-08 08:47:09 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 2s. Last read position: chr3:123,067,167
INFO 2026-06-08 08:47:09 MarkDuplicates Tracking 1400633 as yet unmatched pairs. 40103 records in RAM.
INFO 2026-06-08 08:47:11 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:127,575,254
INFO 2026-06-08 08:47:11 MarkDuplicates Tracking 1397890 as yet unmatched pairs. 37274 records in RAM.
INFO 2026-06-08 08:47:13 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:129,171,230
INFO 2026-06-08 08:47:13 MarkDuplicates Tracking 1398402 as yet unmatched pairs. 37720 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:131,487,693
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 1392286 as yet unmatched pairs. 31506 records in RAM.
INFO 2026-06-08 08:47:16 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:136,855,251
INFO 2026-06-08 08:47:16 MarkDuplicates Tracking 1389411 as yet unmatched pairs. 28529 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:142,562,599
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 1387022 as yet unmatched pairs. 26005 records in RAM.
INFO 2026-06-08 08:47:20 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:149,526,061
INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 1386582 as yet unmatched pairs. 25487 records in RAM.
INFO 2026-06-08 08:47:22 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 2s. Last read position: chr3:154,129,670
INFO 2026-06-08 08:47:22 MarkDuplicates Tracking 1381594 as yet unmatched pairs. 20389 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:169,084,895
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 1379506 as yet unmatched pairs. 18183 records in RAM.
INFO 2026-06-08 08:47:25 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:172,329,055
INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 1377395 as yet unmatched pairs. 15864 records in RAM.
INFO 2026-06-08 08:47:27 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:183,038,923
INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 1374484 as yet unmatched pairs. 12802 records in RAM.
INFO 2026-06-08 08:47:29 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:184,322,024
INFO 2026-06-08 08:47:29 MarkDuplicates Tracking 1371839 as yet unmatched pairs. 10087 records in RAM.
INFO 2026-06-08 08:47:30 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:187,075,707
INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 1369246 as yet unmatched pairs. 7378 records in RAM.
INFO 2026-06-08 08:47:32 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:195,279,287
INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 1366635 as yet unmatched pairs. 4639 records in RAM.
INFO 2026-06-08 08:47:34 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:195,785,260
INFO 2026-06-08 08:47:34 MarkDuplicates Tracking 1365998 as yet unmatched pairs. 3965 records in RAM.
INFO 2026-06-08 08:47:36 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:197,511,976
INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 1362736 as yet unmatched pairs. 625 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 2s. Last read position: chr4:1,744,548
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 1360069 as yet unmatched pairs. 37878 records in RAM.
INFO 2026-06-08 08:47:40 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr4:5,456,910
INFO 2026-06-08 08:47:40 MarkDuplicates Tracking 1356857 as yet unmatched pairs. 34577 records in RAM.
INFO 2026-06-08 08:47:42 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr4:13,586,414
INFO 2026-06-08 08:47:42 MarkDuplicates Tracking 1354178 as yet unmatched pairs. 31769 records in RAM.
INFO 2026-06-08 08:47:43 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr4:25,671,619
INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 1352608 as yet unmatched pairs. 30082 records in RAM.
INFO 2026-06-08 08:47:45 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr4:39,504,416
INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 1349262 as yet unmatched pairs. 26635 records in RAM.
INFO 2026-06-08 08:47:47 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr4:52,745,260
INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 1346587 as yet unmatched pairs. 23812 records in RAM.
INFO 2026-06-08 08:47:48 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr4:68,318,844
INFO 2026-06-08 08:47:48 MarkDuplicates Tracking 1344091 as yet unmatched pairs. 21223 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr4:76,001,737
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 1342680 as yet unmatched pairs. 19690 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr4:82,426,047
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 1339794 as yet unmatched pairs. 16733 records in RAM.
INFO 2026-06-08 08:47:54 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr4:87,892,975
INFO 2026-06-08 08:47:54 MarkDuplicates Tracking 1336800 as yet unmatched pairs. 13643 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr4:105,236,743
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 1334437 as yet unmatched pairs. 11136 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:121,678,438
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 1332338 as yet unmatched pairs. 8913 records in RAM.
INFO 2026-06-08 08:47:58 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr4:143,513,997
INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 1330000 as yet unmatched pairs. 6449 records in RAM.
INFO 2026-06-08 08:48:00 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr4:158,832,093
INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 1327534 as yet unmatched pairs. 3838 records in RAM.
INFO 2026-06-08 08:48:02 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:184,388,863
INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 1325065 as yet unmatched pairs. 1230 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 2s. Last read position: chr5:5,454,586
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 1322195 as yet unmatched pairs. 69634 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr5:14,378,075
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 1320640 as yet unmatched pairs. 67974 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr5:31,529,068
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 1316682 as yet unmatched pairs. 63937 records in RAM.
INFO 2026-06-08 08:48:10 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 2s. Last read position: chr5:36,686,065
INFO 2026-06-08 08:48:10 MarkDuplicates Tracking 1314346 as yet unmatched pairs. 61490 records in RAM.
INFO 2026-06-08 08:48:12 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:40,834,486
INFO 2026-06-08 08:48:12 MarkDuplicates Tracking 1311655 as yet unmatched pairs. 58739 records in RAM.
INFO 2026-06-08 08:48:14 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr5:61,159,964
INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 1309379 as yet unmatched pairs. 56302 records in RAM.
INFO 2026-06-08 08:48:15 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr5:70,970,354
INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 1307436 as yet unmatched pairs. 54289 records in RAM.
INFO 2026-06-08 08:48:17 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr5:76,716,638
INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 1305071 as yet unmatched pairs. 51836 records in RAM.
INFO 2026-06-08 08:48:18 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr5:83,537,202
INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 1303263 as yet unmatched pairs. 49907 records in RAM.
INFO 2026-06-08 08:48:20 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:95,900,743
INFO 2026-06-08 08:48:20 MarkDuplicates Tracking 1300523 as yet unmatched pairs. 47096 records in RAM.
INFO 2026-06-08 08:48:22 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:119,149,965
INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 1297922 as yet unmatched pairs. 44344 records in RAM.
INFO 2026-06-08 08:48:23 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:133,076,743
INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 1295601 as yet unmatched pairs. 41915 records in RAM.
INFO 2026-06-08 08:48:25 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:138,392,227
INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 1292793 as yet unmatched pairs. 39040 records in RAM.
INFO 2026-06-08 08:48:27 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:140,345,963
INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 1290289 as yet unmatched pairs. 36217 records in RAM.
INFO 2026-06-08 08:48:28 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr5:141,929,582
INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 1287604 as yet unmatched pairs. 33468 records in RAM.
INFO 2026-06-08 08:48:30 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr5:150,379,339
INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 1285157 as yet unmatched pairs. 30942 records in RAM.
INFO 2026-06-08 08:48:32 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,568
INFO 2026-06-08 08:48:32 MarkDuplicates Tracking 1313888 as yet unmatched pairs. 59620 records in RAM.
INFO 2026-06-08 08:48:33 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,112
INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 1290976 as yet unmatched pairs. 36678 records in RAM.
INFO 2026-06-08 08:48:35 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:150,407,152
INFO 2026-06-08 08:48:35 MarkDuplicates Tracking 1278625 as yet unmatched pairs. 24282 records in RAM.
INFO 2026-06-08 08:48:37 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:151,032,300
INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 1272783 as yet unmatched pairs. 18409 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 2s. Last read position: chr5:157,343,158
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 1270126 as yet unmatched pairs. 15675 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:171,387,993
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 1276778 as yet unmatched pairs. 22215 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 2s. Last read position: chr5:172,763,138
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 1265321 as yet unmatched pairs. 10716 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:177,211,896
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 1262686 as yet unmatched pairs. 8006 records in RAM.
INFO 2026-06-08 08:48:46 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:179,614,901
INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 1260142 as yet unmatched pairs. 5383 records in RAM.
INFO 2026-06-08 08:48:48 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr5:179,836,501
INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 1257470 as yet unmatched pairs. 2657 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 2s. Last read position: chr6:2,833,820
INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 1254439 as yet unmatched pairs. 96112 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr6:7,231,846
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 1251870 as yet unmatched pairs. 93459 records in RAM.
INFO 2026-06-08 08:48:54 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr6:10,410,218
INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 1248969 as yet unmatched pairs. 90516 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr6:18,161,404
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 1246073 as yet unmatched pairs. 87477 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr6:26,123,645
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 1243807 as yet unmatched pairs. 85093 records in RAM.
INFO 2026-06-08 08:48:58 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:26,598,341
INFO 2026-06-08 08:48:58 MarkDuplicates Tracking 1240464 as yet unmatched pairs. 81688 records in RAM.
INFO 2026-06-08 08:49:00 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr6:28,923,213
INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 1237822 as yet unmatched pairs. 79007 records in RAM.
INFO 2026-06-08 08:49:02 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr6:30,491,390
INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 1236094 as yet unmatched pairs. 77211 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 2s. Last read position: chr6:31,165,223
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 1233804 as yet unmatched pairs. 74868 records in RAM.
INFO 2026-06-08 08:49:06 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 2s. Last read position: chr6:31,627,827
INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 1230296 as yet unmatched pairs. 71307 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr6:31,767,190
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 1227443 as yet unmatched pairs. 68418 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:31,888,055
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 1225414 as yet unmatched pairs. 66355 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:32,127,165
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 1223440 as yet unmatched pairs. 64350 records in RAM.
INFO 2026-06-08 08:49:13 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:32,859,418
INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 1220712 as yet unmatched pairs. 61574 records in RAM.
INFO 2026-06-08 08:49:14 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:33,276,024
INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 1219128 as yet unmatched pairs. 59956 records in RAM.
INFO 2026-06-08 08:49:16 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 2s. Last read position: chr6:33,659,033
INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 1214865 as yet unmatched pairs. 55660 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:35,469,491
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 1212445 as yet unmatched pairs. 53146 records in RAM.
INFO 2026-06-08 08:49:20 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:38,677,365
INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 1209998 as yet unmatched pairs. 50545 records in RAM.
INFO 2026-06-08 08:49:22 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:43,040,658
INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 1206509 as yet unmatched pairs. 46983 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:43,772,011
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 1203889 as yet unmatched pairs. 44296 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr6:47,253,265
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 1201127 as yet unmatched pairs. 41451 records in RAM.
INFO 2026-06-08 08:49:27 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:53,071,121
INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 1198775 as yet unmatched pairs. 38842 records in RAM.
INFO 2026-06-08 08:49:28 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:65,304,762
INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 1196009 as yet unmatched pairs. 35974 records in RAM.
INFO 2026-06-08 08:49:30 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:82,957,342
INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 1193714 as yet unmatched pairs. 33534 records in RAM.
INFO 2026-06-08 08:49:32 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:89,630,820
INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 1191139 as yet unmatched pairs. 30853 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:106,971,363
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 1189542 as yet unmatched pairs. 29151 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr6:113,857,766
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 1186193 as yet unmatched pairs. 25674 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:128,184,464
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 1183667 as yet unmatched pairs. 23033 records in RAM.
INFO 2026-06-08 08:49:39 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 2s. Last read position: chr6:136,362,551
INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 1181071 as yet unmatched pairs. 20357 records in RAM.
INFO 2026-06-08 08:49:41 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr6:142,760,639
INFO 2026-06-08 08:49:41 MarkDuplicates Tracking 1178275 as yet unmatched pairs. 17479 records in RAM.
INFO 2026-06-08 08:49:43 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr6:149,378,764
INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 1175868 as yet unmatched pairs. 14959 records in RAM.
INFO 2026-06-08 08:49:44 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:154,787,883
INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 1173277 as yet unmatched pairs. 12263 records in RAM.
INFO 2026-06-08 08:49:46 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:158,769,335
INFO 2026-06-08 08:49:46 MarkDuplicates Tracking 1171814 as yet unmatched pairs. 10709 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:159,692,663
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 1169229 as yet unmatched pairs. 8066 records in RAM.
INFO 2026-06-08 08:49:49 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:163,566,745
INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 1165460 as yet unmatched pairs. 4228 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:169,705,302
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 1162020 as yet unmatched pairs. 698 records in RAM.
INFO 2026-06-08 08:49:53 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 2s. Last read position: chr7:4,759,450
INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 1158822 as yet unmatched pairs. 89103 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,562
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 1158898 as yet unmatched pairs. 89113 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr7:7,969,733
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 1153208 as yet unmatched pairs. 83367 records in RAM.
INFO 2026-06-08 08:49:58 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 2s. Last read position: chr7:23,529,118
INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 1150632 as yet unmatched pairs. 80700 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:35,673,240
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 1148094 as yet unmatched pairs. 78070 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:44,073,197
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 1145431 as yet unmatched pairs. 75334 records in RAM.
INFO 2026-06-08 08:50:04 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:47,346,183
INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 1142457 as yet unmatched pairs. 72290 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:66,606,773
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 1139772 as yet unmatched pairs. 69516 records in RAM.
INFO 2026-06-08 08:50:06 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:73,069,347
INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 1138101 as yet unmatched pairs. 67789 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:73,537,307
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 1137333 as yet unmatched pairs. 67002 records in RAM.
INFO 2026-06-08 08:50:09 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:74,557,662
INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 1134189 as yet unmatched pairs. 63798 records in RAM.
INFO 2026-06-08 08:50:11 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:75,198,010
INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 1133904 as yet unmatched pairs. 63472 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:75,981,553
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 1131093 as yet unmatched pairs. 60616 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:77,030,475
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 1128118 as yet unmatched pairs. 57589 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:92,045,175
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 1126685 as yet unmatched pairs. 56091 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:94,426,458
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 1123707 as yet unmatched pairs. 53044 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:98,906,239
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 1120809 as yet unmatched pairs. 50100 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 2s. Last read position: chr7:100,023,502
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 1118448 as yet unmatched pairs. 47651 records in RAM.
INFO 2026-06-08 08:50:23 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:100,632,901
INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 1115276 as yet unmatched pairs. 44415 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:101,160,601
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 1113135 as yet unmatched pairs. 42233 records in RAM.
INFO 2026-06-08 08:50:26 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:102,553,333
INFO 2026-06-08 08:50:26 MarkDuplicates Tracking 1111008 as yet unmatched pairs. 40031 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:105,113,016
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 1109427 as yet unmatched pairs. 38392 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:107,955,531
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 1106921 as yet unmatched pairs. 35803 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:116,758,499
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 1105334 as yet unmatched pairs. 34099 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:127,698,928
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 1102656 as yet unmatched pairs. 31350 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:128,089,667
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 1099725 as yet unmatched pairs. 28352 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:131,466,303
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 1096235 as yet unmatched pairs. 24736 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:135,643,192
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 1093746 as yet unmatched pairs. 22168 records in RAM.
INFO 2026-06-08 08:50:39 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:138,576,398
INFO 2026-06-08 08:50:39 MarkDuplicates Tracking 1091260 as yet unmatched pairs. 19623 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:140,455,808
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 1088548 as yet unmatched pairs. 16849 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:143,572,315
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 1085563 as yet unmatched pairs. 13792 records in RAM.
INFO 2026-06-08 08:50:43 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:144,286,520
INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 1084114 as yet unmatched pairs. 12322 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:149,021,020
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 1083069 as yet unmatched pairs. 11215 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr7:150,858,962
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 1079643 as yet unmatched pairs. 7732 records in RAM.
INFO 2026-06-08 08:50:49 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:152,162,444
INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 1076428 as yet unmatched pairs. 4436 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr7:155,812,346
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 1073471 as yet unmatched pairs. 1417 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 2s. Last read position: chr8:11,809,799
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 1070783 as yet unmatched pairs. 72115 records in RAM.
INFO 2026-06-08 08:50:54 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr8:17,564,990
INFO 2026-06-08 08:50:54 MarkDuplicates Tracking 1068121 as yet unmatched pairs. 69404 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 60s. Last read position: chr8:22,614,883
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 1065319 as yet unmatched pairs. 66530 records in RAM.
INFO 2026-06-08 08:51:56 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr8:27,659,205
INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 1062278 as yet unmatched pairs. 63432 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr8:38,253,100
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 1059630 as yet unmatched pairs. 60697 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr8:39,090,070
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 1057382 as yet unmatched pairs. 58375 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr8:42,048,661
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 1054937 as yet unmatched pairs. 55891 records in RAM.
INFO 2026-06-08 08:52:03 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr8:43,191,486
INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 1052516 as yet unmatched pairs. 53403 records in RAM.
INFO 2026-06-08 08:52:05 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr8:47,961,646
INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 1048990 as yet unmatched pairs. 49802 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr8:59,045,328
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 1046045 as yet unmatched pairs. 46784 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr8:67,258,176
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 1043730 as yet unmatched pairs. 44391 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr8:70,597,977
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 1042084 as yet unmatched pairs. 42702 records in RAM.
INFO 2026-06-08 08:52:11 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr8:80,499,675
INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 1039017 as yet unmatched pairs. 39579 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr8:94,668,235
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 1036278 as yet unmatched pairs. 36779 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 2s. Last read position: chr8:99,819,938
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 1033673 as yet unmatched pairs. 34085 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr8:100,948,596
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 1031510 as yet unmatched pairs. 31862 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr8:109,336,192
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 1028681 as yet unmatched pairs. 28945 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr8:124,320,178
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 1025792 as yet unmatched pairs. 25951 records in RAM.
INFO 2026-06-08 08:52:21 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:130,179,288
INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 1022863 as yet unmatched pairs. 22939 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:140,221,504
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 1020382 as yet unmatched pairs. 20344 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,559,440
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 1016865 as yet unmatched pairs. 16735 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,405
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 1013661 as yet unmatched pairs. 13470 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,283
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 1012682 as yet unmatched pairs. 12482 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr8:143,922,192
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 1009497 as yet unmatched pairs. 9259 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:144,055,813
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 1005193 as yet unmatched pairs. 4909 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr8:144,501,466
INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 1001885 as yet unmatched pairs. 1540 records in RAM.
INFO 2026-06-08 08:52:33 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr9:3,829,462
INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 999073 as yet unmatched pairs. 51228 records in RAM.
INFO 2026-06-08 08:52:34 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr9:19,126,269
INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 996514 as yet unmatched pairs. 48547 records in RAM.
INFO 2026-06-08 08:52:36 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr9:33,472,380
INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 993603 as yet unmatched pairs. 45568 records in RAM.
INFO 2026-06-08 08:52:38 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr9:35,732,889
INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 990820 as yet unmatched pairs. 42734 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr9:71,745,443
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 988527 as yet unmatched pairs. 40331 records in RAM.
INFO 2026-06-08 08:52:40 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr9:85,585,517
INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 985984 as yet unmatched pairs. 37690 records in RAM.
INFO 2026-06-08 08:52:42 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr9:91,410,396
INFO 2026-06-08 08:52:42 MarkDuplicates Tracking 983261 as yet unmatched pairs. 34892 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr9:97,986,143
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 980669 as yet unmatched pairs. 32206 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr9:107,306,513
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 978013 as yet unmatched pairs. 29480 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr9:114,050,052
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 975063 as yet unmatched pairs. 26453 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:121,148,761
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 972610 as yet unmatched pairs. 23948 records in RAM.
INFO 2026-06-08 08:52:50 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr9:125,238,988
INFO 2026-06-08 08:52:50 MarkDuplicates Tracking 970185 as yet unmatched pairs. 21465 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr9:128,179,139
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 966516 as yet unmatched pairs. 17748 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr9:129,177,707
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 963502 as yet unmatched pairs. 14672 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:131,197,230
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 960776 as yet unmatched pairs. 11892 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr9:133,332,256
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 958026 as yet unmatched pairs. 9085 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr9:136,407,532
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 955231 as yet unmatched pairs. 6243 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr9:136,980,223
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 952196 as yet unmatched pairs. 3170 records in RAM.
INFO 2026-06-08 08:53:01 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 2s. Last read position: chr10:1,017,133
INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 948554 as yet unmatched pairs. 61815 records in RAM.
INFO 2026-06-08 08:53:03 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 2s. Last read position: chr10:7,799,800
INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 946160 as yet unmatched pairs. 59360 records in RAM.
INFO 2026-06-08 08:53:05 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr10:17,236,302
INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 944308 as yet unmatched pairs. 57403 records in RAM.
INFO 2026-06-08 08:53:06 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr10:27,134,831
INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 940830 as yet unmatched pairs. 53831 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr10:32,034,714
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 938998 as yet unmatched pairs. 51938 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr10:42,793,863
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 935935 as yet unmatched pairs. 48780 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr10:46,014,475
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 936146 as yet unmatched pairs. 48955 records in RAM.
INFO 2026-06-08 08:53:12 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr10:50,129,516
INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 932190 as yet unmatched pairs. 44960 records in RAM.
INFO 2026-06-08 08:53:13 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr10:62,057,124
INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 931697 as yet unmatched pairs. 44376 records in RAM.
INFO 2026-06-08 08:53:15 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr10:68,968,992
INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 927418 as yet unmatched pairs. 40040 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr10:72,274,992
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 924838 as yet unmatched pairs. 37405 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:73,911,174
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 921736 as yet unmatched pairs. 34256 records in RAM.
INFO 2026-06-08 08:53:19 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr10:78,037,219
INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 920763 as yet unmatched pairs. 33174 records in RAM.
INFO 2026-06-08 08:53:21 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr10:84,514,143
INFO 2026-06-08 08:53:21 MarkDuplicates Tracking 916784 as yet unmatched pairs. 29141 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr10:90,894,871
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 914430 as yet unmatched pairs. 26719 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 2s. Last read position: chr10:95,354,913
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 911861 as yet unmatched pairs. 24088 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 2s. Last read position: chr10:97,452,464
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 909270 as yet unmatched pairs. 21435 records in RAM.
INFO 2026-06-08 08:53:29 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr10:101,672,993
INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 906382 as yet unmatched pairs. 18486 records in RAM.
INFO 2026-06-08 08:53:31 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr10:102,484,173
INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 903587 as yet unmatched pairs. 15646 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr10:104,181,375
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 900677 as yet unmatched pairs. 12666 records in RAM.
INFO 2026-06-08 08:53:34 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr10:116,674,789
INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 898359 as yet unmatched pairs. 10279 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr10:119,588,230
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 895588 as yet unmatched pairs. 7448 records in RAM.
INFO 2026-06-08 08:53:37 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr10:123,162,250
INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 893054 as yet unmatched pairs. 4878 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr10:128,108,152
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 890451 as yet unmatched pairs. 2191 records in RAM.
INFO 2026-06-08 08:53:40 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 2s. Last read position: chr11:314,329
INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 888444 as yet unmatched pairs. 84742 records in RAM.
INFO 2026-06-08 08:53:42 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr11:727,537
INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 884641 as yet unmatched pairs. 80900 records in RAM.
INFO 2026-06-08 08:53:44 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr11:1,757,413
INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 881781 as yet unmatched pairs. 78017 records in RAM.
INFO 2026-06-08 08:53:45 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr11:6,217,180
INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 878608 as yet unmatched pairs. 74782 records in RAM.
INFO 2026-06-08 08:53:47 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr11:9,968,461
INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 875806 as yet unmatched pairs. 71921 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr11:17,074,441
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 874559 as yet unmatched pairs. 70601 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr11:32,103,456
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 870613 as yet unmatched pairs. 66601 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 2s. Last read position: chr11:43,414,606
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 867980 as yet unmatched pairs. 63926 records in RAM.
INFO 2026-06-08 08:53:54 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr11:46,682,098
INFO 2026-06-08 08:53:54 MarkDuplicates Tracking 865707 as yet unmatched pairs. 61607 records in RAM.
INFO 2026-06-08 08:53:56 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:57,309,010
INFO 2026-06-08 08:53:56 MarkDuplicates Tracking 862111 as yet unmatched pairs. 57973 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr11:57,802,081
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 859795 as yet unmatched pairs. 55631 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr11:61,312,048
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 857176 as yet unmatched pairs. 52965 records in RAM.
INFO 2026-06-08 08:54:00 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:62,520,460
INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 855325 as yet unmatched pairs. 51064 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr11:62,531,615
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 853084 as yet unmatched pairs. 48807 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:62,796,071
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 849303 as yet unmatched pairs. 44987 records in RAM.
INFO 2026-06-08 08:54:05 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:64,767,607
INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 846344 as yet unmatched pairs. 41999 records in RAM.
INFO 2026-06-08 08:54:06 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:65,553,165
INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 843367 as yet unmatched pairs. 38751 records in RAM.
INFO 2026-06-08 08:54:08 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:65,855,663
INFO 2026-06-08 08:54:08 MarkDuplicates Tracking 840385 as yet unmatched pairs. 35739 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:66,625,046
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 837167 as yet unmatched pairs. 32490 records in RAM.
INFO 2026-06-08 08:54:11 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:67,497,237
INFO 2026-06-08 08:54:11 MarkDuplicates Tracking 833897 as yet unmatched pairs. 29169 records in RAM.
INFO 2026-06-08 08:54:13 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr11:68,892,235
INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 830982 as yet unmatched pairs. 26186 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:72,094,979
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 828102 as yet unmatched pairs. 23269 records in RAM.
INFO 2026-06-08 08:54:16 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:75,165,894
INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 825367 as yet unmatched pairs. 20474 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:85,664,827
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 822438 as yet unmatched pairs. 17480 records in RAM.
INFO 2026-06-08 08:54:19 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:102,111,068
INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 820073 as yet unmatched pairs. 15054 records in RAM.
INFO 2026-06-08 08:54:21 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:111,883,168
INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 817382 as yet unmatched pairs. 12306 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr11:117,181,873
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 814895 as yet unmatched pairs. 9773 records in RAM.
INFO 2026-06-08 08:54:24 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:118,613,818
INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 812103 as yet unmatched pairs. 6953 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:120,457,147
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 809240 as yet unmatched pairs. 4057 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 2s. Last read position: chr11:128,810,739
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 806829 as yet unmatched pairs. 1586 records in RAM.
INFO 2026-06-08 08:54:30 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 2s. Last read position: chr12:878,314
INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 804196 as yet unmatched pairs. 107743 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr12:6,018,827
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 801264 as yet unmatched pairs. 104776 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 2s. Last read position: chr12:6,581,075
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 798476 as yet unmatched pairs. 101955 records in RAM.
INFO 2026-06-08 08:54:35 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr12:6,981,873
INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 795791 as yet unmatched pairs. 99236 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr12:9,067,771
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 792875 as yet unmatched pairs. 96278 records in RAM.
INFO 2026-06-08 08:54:38 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr12:12,908,252
INFO 2026-06-08 08:54:38 MarkDuplicates Tracking 790874 as yet unmatched pairs. 94226 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr12:20,551,929
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 787807 as yet unmatched pairs. 91073 records in RAM.
INFO 2026-06-08 08:54:41 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr12:26,596,895
INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 785310 as yet unmatched pairs. 88509 records in RAM.
INFO 2026-06-08 08:54:43 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr12:28,255,606
INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 782963 as yet unmatched pairs. 86117 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr12:31,984,796
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 780392 as yet unmatched pairs. 83487 records in RAM.
INFO 2026-06-08 08:54:46 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr12:45,852,290
INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 777537 as yet unmatched pairs. 80566 records in RAM.
INFO 2026-06-08 08:54:48 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr12:48,770,859
INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 775030 as yet unmatched pairs. 77992 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr12:49,052,123
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 772491 as yet unmatched pairs. 75423 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr12:49,752,536
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 771219 as yet unmatched pairs. 74129 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr12:51,242,500
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 767541 as yet unmatched pairs. 70402 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr12:52,899,994
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 764460 as yet unmatched pairs. 67291 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr12:53,382,964
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 761528 as yet unmatched pairs. 64323 records in RAM.
INFO 2026-06-08 08:54:57 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr12:53,721,580
INFO 2026-06-08 08:54:57 MarkDuplicates Tracking 758781 as yet unmatched pairs. 61538 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr12:55,726,747
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 757237 as yet unmatched pairs. 59970 records in RAM.
INFO 2026-06-08 08:55:00 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr12:56,163,622
INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 753597 as yet unmatched pairs. 56293 records in RAM.
INFO 2026-06-08 08:55:02 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr12:56,617,487
INFO 2026-06-08 08:55:02 MarkDuplicates Tracking 750592 as yet unmatched pairs. 53250 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr12:57,098,801
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 750733 as yet unmatched pairs. 53373 records in RAM.
INFO 2026-06-08 08:55:04 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr12:57,474,423
INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 745113 as yet unmatched pairs. 47718 records in RAM.
INFO 2026-06-08 08:55:06 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr12:62,965,713
INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 742450 as yet unmatched pairs. 45009 records in RAM.
INFO 2026-06-08 08:55:08 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr12:67,657,796
INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 740609 as yet unmatched pairs. 43036 records in RAM.
INFO 2026-06-08 08:55:10 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr12:68,871,813
INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 737449 as yet unmatched pairs. 39833 records in RAM.
INFO 2026-06-08 08:55:11 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr12:70,330,399
INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 735201 as yet unmatched pairs. 37548 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr12:89,523,757
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 732489 as yet unmatched pairs. 34778 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr12:94,149,269
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 729668 as yet unmatched pairs. 31903 records in RAM.
INFO 2026-06-08 08:55:16 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:95,476,122
INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 727499 as yet unmatched pairs. 29657 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr12:98,599,955
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 724239 as yet unmatched pairs. 26359 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 2s. Last read position: chr12:103,951,520
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 721683 as yet unmatched pairs. 23778 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:108,623,750
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 719222 as yet unmatched pairs. 21239 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:110,614,328
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 716230 as yet unmatched pairs. 18195 records in RAM.
INFO 2026-06-08 08:55:25 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr12:112,283,251
INFO 2026-06-08 08:55:25 MarkDuplicates Tracking 713509 as yet unmatched pairs. 15438 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:117,172,524
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 710312 as yet unmatched pairs. 12193 records in RAM.
INFO 2026-06-08 08:55:28 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:120,498,136
INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 707712 as yet unmatched pairs. 9530 records in RAM.
INFO 2026-06-08 08:55:30 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:122,856,147
INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 704800 as yet unmatched pairs. 6573 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:124,911,746
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 701971 as yet unmatched pairs. 3715 records in RAM.
INFO 2026-06-08 08:55:33 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:132,730,079
INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 699458 as yet unmatched pairs. 1145 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr13:21,140,615
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 696770 as yet unmatched pairs. 19191 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr13:30,462,678
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 694489 as yet unmatched pairs. 16842 records in RAM.
INFO 2026-06-08 08:55:38 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr13:40,560,387
INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 692052 as yet unmatched pairs. 14363 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr13:45,988,805
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 689024 as yet unmatched pairs. 11267 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr13:52,455,509
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 686352 as yet unmatched pairs. 8556 records in RAM.
INFO 2026-06-08 08:55:42 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr13:95,161,216
INFO 2026-06-08 08:55:42 MarkDuplicates Tracking 683844 as yet unmatched pairs. 6002 records in RAM.
INFO 2026-06-08 08:55:44 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr13:110,213,795
INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 681417 as yet unmatched pairs. 3516 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 2s. Last read position: chr14:19,398,258
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 677929 as yet unmatched pairs. 76612 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr14:21,373,416
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 675280 as yet unmatched pairs. 73926 records in RAM.
INFO 2026-06-08 08:55:49 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr14:22,875,653
INFO 2026-06-08 08:55:49 MarkDuplicates Tracking 672706 as yet unmatched pairs. 71333 records in RAM.
INFO 2026-06-08 08:55:51 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr14:24,137,142
INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 670142 as yet unmatched pairs. 68749 records in RAM.
INFO 2026-06-08 08:55:53 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr14:31,106,871
INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 666846 as yet unmatched pairs. 65427 records in RAM.
INFO 2026-06-08 08:55:54 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr14:39,345,970
INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 664112 as yet unmatched pairs. 62636 records in RAM.
INFO 2026-06-08 08:55:56 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr14:52,005,438
INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 662316 as yet unmatched pairs. 60758 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr14:54,481,439
INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 659019 as yet unmatched pairs. 57433 records in RAM.
INFO 2026-06-08 08:55:59 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr14:61,740,566
INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 657400 as yet unmatched pairs. 55772 records in RAM.
INFO 2026-06-08 08:56:01 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr14:64,052,899
INFO 2026-06-08 08:56:01 MarkDuplicates Tracking 655136 as yet unmatched pairs. 53476 records in RAM.
INFO 2026-06-08 08:56:02 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr14:64,220,561
INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 651548 as yet unmatched pairs. 49848 records in RAM.
INFO 2026-06-08 08:56:03 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr14:68,893,699
INFO 2026-06-08 08:56:03 MarkDuplicates Tracking 648481 as yet unmatched pairs. 46734 records in RAM.
INFO 2026-06-08 08:56:05 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr14:73,719,352
INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 645664 as yet unmatched pairs. 43886 records in RAM.
INFO 2026-06-08 08:56:06 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr14:75,280,857
INFO 2026-06-08 08:56:06 MarkDuplicates Tracking 643507 as yet unmatched pairs. 41700 records in RAM.
INFO 2026-06-08 08:56:08 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr14:89,971,235
INFO 2026-06-08 08:56:08 MarkDuplicates Tracking 639959 as yet unmatched pairs. 38103 records in RAM.
INFO 2026-06-08 08:56:09 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr14:94,382,740
INFO 2026-06-08 08:56:09 MarkDuplicates Tracking 637059 as yet unmatched pairs. 35174 records in RAM.
INFO 2026-06-08 08:56:11 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr14:100,342,468
INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 634955 as yet unmatched pairs. 33022 records in RAM.
INFO 2026-06-08 08:56:12 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr14:102,870,361
INFO 2026-06-08 08:56:12 MarkDuplicates Tracking 631594 as yet unmatched pairs. 29639 records in RAM.
INFO 2026-06-08 08:56:14 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr14:104,944,128
INFO 2026-06-08 08:56:14 MarkDuplicates Tracking 628594 as yet unmatched pairs. 26606 records in RAM.
INFO 2026-06-08 08:56:15 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr14:105,624,654
INFO 2026-06-08 08:56:15 MarkDuplicates Tracking 627834 as yet unmatched pairs. 25831 records in RAM.
INFO 2026-06-08 08:56:16 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,431
INFO 2026-06-08 08:56:16 MarkDuplicates Tracking 632650 as yet unmatched pairs. 30635 records in RAM.
INFO 2026-06-08 08:56:18 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,358
INFO 2026-06-08 08:56:18 MarkDuplicates Tracking 627553 as yet unmatched pairs. 25502 records in RAM.
INFO 2026-06-08 08:56:19 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,510
INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 627526 as yet unmatched pairs. 25451 records in RAM.
INFO 2026-06-08 08:56:21 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,624
INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 624770 as yet unmatched pairs. 22673 records in RAM.
INFO 2026-06-08 08:56:22 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,040
INFO 2026-06-08 08:56:22 MarkDuplicates Tracking 621022 as yet unmatched pairs. 18874 records in RAM.
INFO 2026-06-08 08:56:23 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,883
INFO 2026-06-08 08:56:23 MarkDuplicates Tracking 629745 as yet unmatched pairs. 27554 records in RAM.
INFO 2026-06-08 08:56:25 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr14:105,770,133
INFO 2026-06-08 08:56:25 MarkDuplicates Tracking 612500 as yet unmatched pairs. 10292 records in RAM.
INFO 2026-06-08 08:56:26 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr14:105,854,395
INFO 2026-06-08 08:56:26 MarkDuplicates Tracking 618829 as yet unmatched pairs. 16605 records in RAM.
INFO 2026-06-08 08:56:27 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr14:105,854,967
INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 615667 as yet unmatched pairs. 13433 records in RAM.
INFO 2026-06-08 08:56:29 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr14:105,855,590
INFO 2026-06-08 08:56:29 MarkDuplicates Tracking 615873 as yet unmatched pairs. 13622 records in RAM.
INFO 2026-06-08 08:56:30 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr14:106,537,851
INFO 2026-06-08 08:56:30 MarkDuplicates Tracking 602432 as yet unmatched pairs. 151 records in RAM.
INFO 2026-06-08 08:56:32 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr15:29,742,704
INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 600259 as yet unmatched pairs. 45483 records in RAM.
INFO 2026-06-08 08:56:33 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr15:39,582,520
INFO 2026-06-08 08:56:33 MarkDuplicates Tracking 598279 as yet unmatched pairs. 43475 records in RAM.
INFO 2026-06-08 08:56:35 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr15:41,669,797
INFO 2026-06-08 08:56:35 MarkDuplicates Tracking 595580 as yet unmatched pairs. 40752 records in RAM.
INFO 2026-06-08 08:56:37 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr15:43,407,430
INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 592440 as yet unmatched pairs. 37592 records in RAM.
INFO 2026-06-08 08:56:38 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr15:44,657,125
INFO 2026-06-08 08:56:38 MarkDuplicates Tracking 590193 as yet unmatched pairs. 35317 records in RAM.
INFO 2026-06-08 08:56:40 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr15:51,514,520
INFO 2026-06-08 08:56:40 MarkDuplicates Tracking 587570 as yet unmatched pairs. 32660 records in RAM.
INFO 2026-06-08 08:56:41 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr15:58,184,420
INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 584793 as yet unmatched pairs. 29843 records in RAM.
INFO 2026-06-08 08:56:44 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 2s. Last read position: chr15:63,127,554
INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 581979 as yet unmatched pairs. 27012 records in RAM.
INFO 2026-06-08 08:56:46 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 2s. Last read position: chr15:65,701,795
INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 579151 as yet unmatched pairs. 24156 records in RAM.
INFO 2026-06-08 08:56:47 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr15:69,453,709
INFO 2026-06-08 08:56:47 MarkDuplicates Tracking 579236 as yet unmatched pairs. 24197 records in RAM.
INFO 2026-06-08 08:56:49 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr15:72,555,294
INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 573819 as yet unmatched pairs. 18737 records in RAM.
INFO 2026-06-08 08:56:50 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr15:74,937,932
INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 570437 as yet unmatched pairs. 15336 records in RAM.
INFO 2026-06-08 08:56:52 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr15:78,105,760
INFO 2026-06-08 08:56:52 MarkDuplicates Tracking 567480 as yet unmatched pairs. 12341 records in RAM.
INFO 2026-06-08 08:56:53 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr15:83,151,216
INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 564934 as yet unmatched pairs. 9761 records in RAM.
INFO 2026-06-08 08:56:55 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr15:88,856,705
INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 562451 as yet unmatched pairs. 7257 records in RAM.
INFO 2026-06-08 08:56:56 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr15:90,491,479
INFO 2026-06-08 08:56:56 MarkDuplicates Tracking 559697 as yet unmatched pairs. 4463 records in RAM.
INFO 2026-06-08 08:56:58 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr15:99,130,157
INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 556706 as yet unmatched pairs. 1429 records in RAM.
INFO 2026-06-08 08:57:00 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr16:580,192
INFO 2026-06-08 08:57:00 MarkDuplicates Tracking 553676 as yet unmatched pairs. 89040 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr16:1,213,783
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 550221 as yet unmatched pairs. 85560 records in RAM.
INFO 2026-06-08 08:57:03 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr16:1,976,848
INFO 2026-06-08 08:57:03 MarkDuplicates Tracking 546747 as yet unmatched pairs. 82065 records in RAM.
INFO 2026-06-08 08:57:04 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr16:2,557,921
INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 543487 as yet unmatched pairs. 78783 records in RAM.
INFO 2026-06-08 08:57:06 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr16:2,768,177
INFO 2026-06-08 08:57:06 MarkDuplicates Tracking 540818 as yet unmatched pairs. 76097 records in RAM.
INFO 2026-06-08 08:57:08 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr16:3,767,847
INFO 2026-06-08 08:57:08 MarkDuplicates Tracking 537607 as yet unmatched pairs. 72861 records in RAM.
INFO 2026-06-08 08:57:09 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr16:8,797,899
INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 534344 as yet unmatched pairs. 69585 records in RAM.
INFO 2026-06-08 08:57:11 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr16:11,929,385
INFO 2026-06-08 08:57:11 MarkDuplicates Tracking 531711 as yet unmatched pairs. 66906 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr16:14,926,541
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 529728 as yet unmatched pairs. 64900 records in RAM.
INFO 2026-06-08 08:57:13 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr16:16,274,060
INFO 2026-06-08 08:57:13 MarkDuplicates Tracking 527795 as yet unmatched pairs. 62941 records in RAM.
INFO 2026-06-08 08:57:14 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr16:18,377,096
INFO 2026-06-08 08:57:14 MarkDuplicates Tracking 527472 as yet unmatched pairs. 62616 records in RAM.
INFO 2026-06-08 08:57:16 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr16:19,071,899
INFO 2026-06-08 08:57:16 MarkDuplicates Tracking 525229 as yet unmatched pairs. 60361 records in RAM.
INFO 2026-06-08 08:57:17 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr16:21,404,803
INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 524770 as yet unmatched pairs. 59879 records in RAM.
INFO 2026-06-08 08:57:19 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr16:21,835,039
INFO 2026-06-08 08:57:19 MarkDuplicates Tracking 522205 as yet unmatched pairs. 57296 records in RAM.
INFO 2026-06-08 08:57:20 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr16:22,308,169
INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 521201 as yet unmatched pairs. 56284 records in RAM.
INFO 2026-06-08 08:57:22 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,739
INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 520871 as yet unmatched pairs. 55942 records in RAM.
INFO 2026-06-08 08:57:23 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr16:27,257,434
INFO 2026-06-08 08:57:23 MarkDuplicates Tracking 518508 as yet unmatched pairs. 53564 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:28,734,776
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 516144 as yet unmatched pairs. 51184 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr16:29,385,890
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 514980 as yet unmatched pairs. 49999 records in RAM.
INFO 2026-06-08 08:57:27 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:29,797,045
INFO 2026-06-08 08:57:27 MarkDuplicates Tracking 513718 as yet unmatched pairs. 48729 records in RAM.
INFO 2026-06-08 08:57:29 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:30,187,174
INFO 2026-06-08 08:57:29 MarkDuplicates Tracking 510424 as yet unmatched pairs. 45419 records in RAM.
INFO 2026-06-08 08:57:31 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:30,525,727
INFO 2026-06-08 08:57:31 MarkDuplicates Tracking 509047 as yet unmatched pairs. 44027 records in RAM.
INFO 2026-06-08 08:57:32 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr16:31,080,794
INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 506141 as yet unmatched pairs. 41107 records in RAM.
INFO 2026-06-08 08:57:34 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr16:31,191,099
INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 505896 as yet unmatched pairs. 40839 records in RAM.
INFO 2026-06-08 08:57:35 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr16:50,291,740
INFO 2026-06-08 08:57:35 MarkDuplicates Tracking 500556 as yet unmatched pairs. 35461 records in RAM.
INFO 2026-06-08 08:57:37 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr16:56,510,879
INFO 2026-06-08 08:57:37 MarkDuplicates Tracking 498082 as yet unmatched pairs. 32955 records in RAM.
INFO 2026-06-08 08:57:38 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:57,655,466
INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 495028 as yet unmatched pairs. 29871 records in RAM.
INFO 2026-06-08 08:57:40 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:66,910,272
INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 492247 as yet unmatched pairs. 27050 records in RAM.
INFO 2026-06-08 08:57:41 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:67,868,389
INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 489201 as yet unmatched pairs. 23987 records in RAM.
INFO 2026-06-08 08:57:43 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:68,829,685
INFO 2026-06-08 08:57:43 MarkDuplicates Tracking 486624 as yet unmatched pairs. 21382 records in RAM.
INFO 2026-06-08 08:57:44 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:70,317,540
INFO 2026-06-08 08:57:44 MarkDuplicates Tracking 483674 as yet unmatched pairs. 18411 records in RAM.
INFO 2026-06-08 08:57:45 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:72,796,183
INFO 2026-06-08 08:57:45 MarkDuplicates Tracking 480803 as yet unmatched pairs. 15521 records in RAM.
INFO 2026-06-08 08:57:47 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:80,684,582
INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 477882 as yet unmatched pairs. 12549 records in RAM.
INFO 2026-06-08 08:57:49 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 2s. Last read position: chr16:85,654,975
INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 474954 as yet unmatched pairs. 9593 records in RAM.
INFO 2026-06-08 08:57:51 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:88,643,493
INFO 2026-06-08 08:57:51 MarkDuplicates Tracking 473707 as yet unmatched pairs. 8323 records in RAM.
INFO 2026-06-08 08:57:52 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:89,508,564
INFO 2026-06-08 08:57:52 MarkDuplicates Tracking 468726 as yet unmatched pairs. 3321 records in RAM.
INFO 2026-06-08 08:57:54 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 2s. Last read position: chr17:655,885
INFO 2026-06-08 08:57:54 MarkDuplicates Tracking 465513 as yet unmatched pairs. 120704 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr17:1,680,821
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 462659 as yet unmatched pairs. 117826 records in RAM.
INFO 2026-06-08 08:57:58 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr17:4,050,912
INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 459263 as yet unmatched pairs. 114417 records in RAM.
INFO 2026-06-08 08:57:59 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr17:5,416,609
INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 456309 as yet unmatched pairs. 111455 records in RAM.
INFO 2026-06-08 08:58:00 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr17:7,461,888
INFO 2026-06-08 08:58:00 MarkDuplicates Tracking 453233 as yet unmatched pairs. 108365 records in RAM.
INFO 2026-06-08 08:58:02 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr17:7,580,937
INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 451372 as yet unmatched pairs. 106499 records in RAM.
INFO 2026-06-08 08:58:04 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr17:8,535,816
INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 447855 as yet unmatched pairs. 102963 records in RAM.
INFO 2026-06-08 08:58:05 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr17:16,727,628
INFO 2026-06-08 08:58:05 MarkDuplicates Tracking 445113 as yet unmatched pairs. 100191 records in RAM.
INFO 2026-06-08 08:58:07 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr17:18,670,901
INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 442059 as yet unmatched pairs. 97116 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 2s. Last read position: chr17:28,361,271
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 439440 as yet unmatched pairs. 94482 records in RAM.
INFO 2026-06-08 08:58:10 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr17:29,121,146
INFO 2026-06-08 08:58:10 MarkDuplicates Tracking 436493 as yet unmatched pairs. 91506 records in RAM.
INFO 2026-06-08 08:58:12 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr17:31,230,309
INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 434212 as yet unmatched pairs. 89198 records in RAM.
INFO 2026-06-08 08:58:14 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr17:35,016,405
INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 431570 as yet unmatched pairs. 86537 records in RAM.
INFO 2026-06-08 08:58:16 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 2s. Last read position: chr17:36,254,062
INFO 2026-06-08 08:58:16 MarkDuplicates Tracking 428787 as yet unmatched pairs. 83748 records in RAM.
INFO 2026-06-08 08:58:17 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr17:38,058,234
INFO 2026-06-08 08:58:17 MarkDuplicates Tracking 426595 as yet unmatched pairs. 81550 records in RAM.
INFO 2026-06-08 08:58:19 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr17:39,201,245
INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 425352 as yet unmatched pairs. 80291 records in RAM.
INFO 2026-06-08 08:58:20 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr17:39,715,778
INFO 2026-06-08 08:58:20 MarkDuplicates Tracking 421480 as yet unmatched pairs. 76407 records in RAM.
INFO 2026-06-08 08:58:22 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:40,331,263
INFO 2026-06-08 08:58:22 MarkDuplicates Tracking 418353 as yet unmatched pairs. 73264 records in RAM.
INFO 2026-06-08 08:58:24 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr17:41,905,591
INFO 2026-06-08 08:58:24 MarkDuplicates Tracking 415370 as yet unmatched pairs. 70263 records in RAM.
INFO 2026-06-08 08:58:25 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr17:42,698,713
INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 412144 as yet unmatched pairs. 67030 records in RAM.
INFO 2026-06-08 08:58:27 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr17:44,215,705
INFO 2026-06-08 08:58:27 MarkDuplicates Tracking 409261 as yet unmatched pairs. 64128 records in RAM.
INFO 2026-06-08 08:58:28 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr17:45,519,063
INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 406262 as yet unmatched pairs. 61110 records in RAM.
INFO 2026-06-08 08:58:30 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr17:47,601,578
INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 404699 as yet unmatched pairs. 59528 records in RAM.
INFO 2026-06-08 08:58:31 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr17:50,135,577
INFO 2026-06-08 08:58:31 MarkDuplicates Tracking 401793 as yet unmatched pairs. 56595 records in RAM.
INFO 2026-06-08 08:58:33 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,395
INFO 2026-06-08 08:58:33 MarkDuplicates Tracking 399520 as yet unmatched pairs. 54308 records in RAM.
INFO 2026-06-08 09:00:43 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 130s. Last read position: chr17:50,194,810
INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 397991 as yet unmatched pairs. 52768 records in RAM.
INFO 2026-06-08 09:00:44 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,201,414
INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 393532 as yet unmatched pairs. 48298 records in RAM.
INFO 2026-06-08 09:00:46 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 1s. Last read position: chr17:55,774,808
INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 389561 as yet unmatched pairs. 44313 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:13s. Time for last 1,000,000: 1s. Last read position: chr17:59,661,444
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 387303 as yet unmatched pairs. 42032 records in RAM.
INFO 2026-06-08 09:00:49 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr17:60,656,829
INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 384187 as yet unmatched pairs. 38906 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: chr17:63,833,160
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 381416 as yet unmatched pairs. 36122 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 1s. Last read position: chr17:67,167,466
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 379018 as yet unmatched pairs. 33688 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 1s. Last read position: chr17:68,528,875
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 377321 as yet unmatched pairs. 31980 records in RAM.
INFO 2026-06-08 09:00:55 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 1s. Last read position: chr17:74,999,559
INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 373562 as yet unmatched pairs. 28200 records in RAM.
INFO 2026-06-08 09:00:57 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr17:75,706,055
INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 370563 as yet unmatched pairs. 25185 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 1s. Last read position: chr17:76,574,397
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 367247 as yet unmatched pairs. 21846 records in RAM.
INFO 2026-06-08 09:01:00 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 1s. Last read position: chr17:78,702,560
INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 364256 as yet unmatched pairs. 18843 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr17:80,289,757
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 361280 as yet unmatched pairs. 15846 records in RAM.
INFO 2026-06-08 09:01:03 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 1s. Last read position: chr17:80,364,514
INFO 2026-06-08 09:01:03 MarkDuplicates Tracking 358413 as yet unmatched pairs. 12961 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr17:81,511,933
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 356702 as yet unmatched pairs. 11234 records in RAM.
INFO 2026-06-08 09:01:06 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr17:81,847,327
INFO 2026-06-08 09:01:06 MarkDuplicates Tracking 352963 as yet unmatched pairs. 7480 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr17:82,090,460
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 348461 as yet unmatched pairs. 2959 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr18:670,731
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 345601 as yet unmatched pairs. 14652 records in RAM.
INFO 2026-06-08 09:01:10 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr18:9,122,657
INFO 2026-06-08 09:01:10 MarkDuplicates Tracking 342891 as yet unmatched pairs. 11913 records in RAM.
INFO 2026-06-08 09:01:12 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr18:21,008,106
INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 340031 as yet unmatched pairs. 9031 records in RAM.
INFO 2026-06-08 09:01:14 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 2s. Last read position: chr18:32,287,048
INFO 2026-06-08 09:01:14 MarkDuplicates Tracking 337183 as yet unmatched pairs. 6172 records in RAM.
INFO 2026-06-08 09:01:16 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr18:54,164,578
INFO 2026-06-08 09:01:16 MarkDuplicates Tracking 334765 as yet unmatched pairs. 3729 records in RAM.
INFO 2026-06-08 09:01:17 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 1s. Last read position: chr18:76,442,735
INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 331824 as yet unmatched pairs. 763 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 2s. Last read position: chr19:1,031,096
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 328604 as yet unmatched pairs. 130106 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 2s. Last read position: chr19:1,440,076
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 327673 as yet unmatched pairs. 129169 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr19:2,438,243
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 321782 as yet unmatched pairs. 123269 records in RAM.
INFO 2026-06-08 09:01:25 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr19:4,446,919
INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 318386 as yet unmatched pairs. 119868 records in RAM.
INFO 2026-06-08 09:01:26 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr19:5,896,534
INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 315896 as yet unmatched pairs. 117369 records in RAM.
INFO 2026-06-08 09:01:28 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr19:6,719,242
INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 312490 as yet unmatched pairs. 113955 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 1s. Last read position: chr19:8,471,320
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 309287 as yet unmatched pairs. 110741 records in RAM.
INFO 2026-06-08 09:01:31 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr19:8,935,596
INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 306662 as yet unmatched pairs. 108104 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr19:8,950,704
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 304547 as yet unmatched pairs. 105972 records in RAM.
INFO 2026-06-08 09:01:34 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr19:8,957,898
INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 302511 as yet unmatched pairs. 103929 records in RAM.
INFO 2026-06-08 09:01:36 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr19:8,964,428
INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 299486 as yet unmatched pairs. 100900 records in RAM.
INFO 2026-06-08 09:01:37 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr19:8,978,328
INFO 2026-06-08 09:01:37 MarkDuplicates Tracking 297058 as yet unmatched pairs. 98465 records in RAM.
INFO 2026-06-08 09:01:39 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr19:10,552,073
INFO 2026-06-08 09:01:39 MarkDuplicates Tracking 293781 as yet unmatched pairs. 95171 records in RAM.
INFO 2026-06-08 09:01:40 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr19:11,437,941
INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 290870 as yet unmatched pairs. 92246 records in RAM.
INFO 2026-06-08 09:01:42 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr19:12,880,871
INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 287865 as yet unmatched pairs. 89235 records in RAM.
INFO 2026-06-08 09:01:44 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 2s. Last read position: chr19:14,398,086
INFO 2026-06-08 09:01:44 MarkDuplicates Tracking 284958 as yet unmatched pairs. 86321 records in RAM.
INFO 2026-06-08 09:01:46 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 2s. Last read position: chr19:15,243,371
INFO 2026-06-08 09:01:46 MarkDuplicates Tracking 282225 as yet unmatched pairs. 83584 records in RAM.
INFO 2026-06-08 09:01:48 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr19:16,326,899
INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 278763 as yet unmatched pairs. 80118 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr19:17,861,308
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 275493 as yet unmatched pairs. 76840 records in RAM.
INFO 2026-06-08 09:01:50 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr19:18,760,014
INFO 2026-06-08 09:01:50 MarkDuplicates Tracking 272192 as yet unmatched pairs. 73528 records in RAM.
INFO 2026-06-08 09:01:52 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr19:23,654,555
INFO 2026-06-08 09:01:52 MarkDuplicates Tracking 269108 as yet unmatched pairs. 70439 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr19:34,428,509
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 266503 as yet unmatched pairs. 67817 records in RAM.
INFO 2026-06-08 09:01:55 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr19:35,720,535
INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 263031 as yet unmatched pairs. 64334 records in RAM.
INFO 2026-06-08 09:01:56 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr19:36,449,368
INFO 2026-06-08 09:01:56 MarkDuplicates Tracking 260050 as yet unmatched pairs. 61344 records in RAM.
INFO 2026-06-08 09:01:58 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr19:38,382,216
INFO 2026-06-08 09:01:58 MarkDuplicates Tracking 257159 as yet unmatched pairs. 58428 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr19:38,845,960
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 254460 as yet unmatched pairs. 55719 records in RAM.
INFO 2026-06-08 09:02:01 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr19:39,408,295
INFO 2026-06-08 09:02:01 MarkDuplicates Tracking 251344 as yet unmatched pairs. 52590 records in RAM.
INFO 2026-06-08 09:02:02 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr19:39,828,408
INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 247598 as yet unmatched pairs. 48838 records in RAM.
INFO 2026-06-08 09:02:04 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr19:40,256,980
INFO 2026-06-08 09:02:04 MarkDuplicates Tracking 248141 as yet unmatched pairs. 49373 records in RAM.
INFO 2026-06-08 09:02:05 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr19:41,304,066
INFO 2026-06-08 09:02:05 MarkDuplicates Tracking 242039 as yet unmatched pairs. 43265 records in RAM.
INFO 2026-06-08 09:02:07 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr19:42,230,787
INFO 2026-06-08 09:02:07 MarkDuplicates Tracking 238747 as yet unmatched pairs. 39969 records in RAM.
INFO 2026-06-08 09:02:08 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr19:42,351,288
INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 235378 as yet unmatched pairs. 36593 records in RAM.
INFO 2026-06-08 09:02:11 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 2s. Last read position: chr19:44,809,114
INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 232637 as yet unmatched pairs. 33818 records in RAM.
INFO 2026-06-08 09:02:12 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr19:44,987,175
INFO 2026-06-08 09:02:12 MarkDuplicates Tracking 228972 as yet unmatched pairs. 30150 records in RAM.
INFO 2026-06-08 09:02:14 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr19:45,470,850
INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 226110 as yet unmatched pairs. 27277 records in RAM.
INFO 2026-06-08 09:02:15 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:45,830,148
INFO 2026-06-08 09:02:15 MarkDuplicates Tracking 222935 as yet unmatched pairs. 24090 records in RAM.
INFO 2026-06-08 09:02:17 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr19:47,752,510
INFO 2026-06-08 09:02:17 MarkDuplicates Tracking 219463 as yet unmatched pairs. 20612 records in RAM.
INFO 2026-06-08 09:02:18 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr19:49,107,986
INFO 2026-06-08 09:02:18 MarkDuplicates Tracking 216448 as yet unmatched pairs. 17582 records in RAM.
INFO 2026-06-08 09:02:20 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr19:49,835,089
INFO 2026-06-08 09:02:20 MarkDuplicates Tracking 213349 as yet unmatched pairs. 14472 records in RAM.
INFO 2026-06-08 09:02:21 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr19:51,371,800
INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 210068 as yet unmatched pairs. 11181 records in RAM.
INFO 2026-06-08 09:02:22 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr19:54,153,771
INFO 2026-06-08 09:02:22 MarkDuplicates Tracking 207468 as yet unmatched pairs. 8564 records in RAM.
INFO 2026-06-08 09:02:24 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr19:55,230,795
INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 204379 as yet unmatched pairs. 5468 records in RAM.
INFO 2026-06-08 09:02:25 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr19:57,720,915
INFO 2026-06-08 09:02:25 MarkDuplicates Tracking 201108 as yet unmatched pairs. 2187 records in RAM.
INFO 2026-06-08 09:02:27 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr20:1,367,473
INFO 2026-06-08 09:02:27 MarkDuplicates Tracking 198260 as yet unmatched pairs. 66553 records in RAM.
INFO 2026-06-08 09:02:29 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr20:4,873,944
INFO 2026-06-08 09:02:29 MarkDuplicates Tracking 195226 as yet unmatched pairs. 63498 records in RAM.
INFO 2026-06-08 09:02:30 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr20:17,659,706
INFO 2026-06-08 09:02:30 MarkDuplicates Tracking 192663 as yet unmatched pairs. 60910 records in RAM.
INFO 2026-06-08 09:02:32 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr20:31,527,523
INFO 2026-06-08 09:02:32 MarkDuplicates Tracking 190616 as yet unmatched pairs. 58858 records in RAM.
INFO 2026-06-08 09:02:34 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr20:32,456,352
INFO 2026-06-08 09:02:34 MarkDuplicates Tracking 186791 as yet unmatched pairs. 55027 records in RAM.
INFO 2026-06-08 09:02:36 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 2s. Last read position: chr20:34,741,319
INFO 2026-06-08 09:02:36 MarkDuplicates Tracking 184082 as yet unmatched pairs. 52299 records in RAM.
INFO 2026-06-08 09:02:37 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr20:35,654,625
INFO 2026-06-08 09:02:37 MarkDuplicates Tracking 181358 as yet unmatched pairs. 49561 records in RAM.
INFO 2026-06-08 09:02:39 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr20:36,892,883
INFO 2026-06-08 09:02:39 MarkDuplicates Tracking 177857 as yet unmatched pairs. 46047 records in RAM.
INFO 2026-06-08 09:02:40 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr20:38,155,963
INFO 2026-06-08 09:02:40 MarkDuplicates Tracking 175955 as yet unmatched pairs. 44136 records in RAM.
INFO 2026-06-08 09:02:42 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr20:41,404,691
INFO 2026-06-08 09:02:42 MarkDuplicates Tracking 172133 as yet unmatched pairs. 40300 records in RAM.
INFO 2026-06-08 09:02:43 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr20:45,253,091
INFO 2026-06-08 09:02:43 MarkDuplicates Tracking 170776 as yet unmatched pairs. 38934 records in RAM.
INFO 2026-06-08 09:02:45 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr20:45,814,399
INFO 2026-06-08 09:02:45 MarkDuplicates Tracking 167026 as yet unmatched pairs. 35179 records in RAM.
INFO 2026-06-08 09:02:46 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr20:47,210,701
INFO 2026-06-08 09:02:46 MarkDuplicates Tracking 163159 as yet unmatched pairs. 31306 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr20:49,228,877
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 160377 as yet unmatched pairs. 28510 records in RAM.
INFO 2026-06-08 09:02:49 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr20:50,928,680
INFO 2026-06-08 09:02:49 MarkDuplicates Tracking 157558 as yet unmatched pairs. 25688 records in RAM.
INFO 2026-06-08 09:02:51 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr20:56,370,518
INFO 2026-06-08 09:02:51 MarkDuplicates Tracking 154680 as yet unmatched pairs. 22792 records in RAM.
INFO 2026-06-08 09:02:52 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr20:58,909,559
INFO 2026-06-08 09:02:52 MarkDuplicates Tracking 151277 as yet unmatched pairs. 19375 records in RAM.
INFO 2026-06-08 09:02:54 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr20:62,284,055
INFO 2026-06-08 09:02:54 MarkDuplicates Tracking 148026 as yet unmatched pairs. 16103 records in RAM.
INFO 2026-06-08 09:02:55 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr20:62,328,420
INFO 2026-06-08 09:02:55 MarkDuplicates Tracking 145997 as yet unmatched pairs. 14065 records in RAM.
INFO 2026-06-08 09:02:57 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr20:62,804,966
INFO 2026-06-08 09:02:57 MarkDuplicates Tracking 140889 as yet unmatched pairs. 8954 records in RAM.
INFO 2026-06-08 09:02:58 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr20:63,494,809
INFO 2026-06-08 09:02:58 MarkDuplicates Tracking 138266 as yet unmatched pairs. 6321 records in RAM.
INFO 2026-06-08 09:03:00 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr20:63,742,362
INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 135010 as yet unmatched pairs. 3061 records in RAM.
INFO 2026-06-08 09:03:02 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 2s. Last read position: chr21:6,120,523
INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 131666 as yet unmatched pairs. 18697 records in RAM.
INFO 2026-06-08 09:03:03 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,978
INFO 2026-06-08 09:03:03 MarkDuplicates Tracking 130283 as yet unmatched pairs. 17271 records in RAM.
INFO 2026-06-08 09:03:04 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr21:8,442,556
INFO 2026-06-08 09:03:04 MarkDuplicates Tracking 129372 as yet unmatched pairs. 16352 records in RAM.
INFO 2026-06-08 09:03:05 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr21:26,021,964
INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 127457 as yet unmatched pairs. 14426 records in RAM.
INFO 2026-06-08 09:03:07 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr21:33,552,489
INFO 2026-06-08 09:03:07 MarkDuplicates Tracking 125323 as yet unmatched pairs. 12285 records in RAM.
INFO 2026-06-08 09:03:08 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr21:39,225,055
INFO 2026-06-08 09:03:08 MarkDuplicates Tracking 121805 as yet unmatched pairs. 8758 records in RAM.
INFO 2026-06-08 09:03:10 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr21:43,753,586
INFO 2026-06-08 09:03:10 MarkDuplicates Tracking 119122 as yet unmatched pairs. 6069 records in RAM.
INFO 2026-06-08 09:03:11 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr21:45,497,619
INFO 2026-06-08 09:03:11 MarkDuplicates Tracking 115805 as yet unmatched pairs. 2748 records in RAM.
INFO 2026-06-08 09:03:13 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 2s. Last read position: chr22:17,613,264
INFO 2026-06-08 09:03:13 MarkDuplicates Tracking 113030 as yet unmatched pairs. 59181 records in RAM.
INFO 2026-06-08 09:03:15 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr22:20,116,525
INFO 2026-06-08 09:03:15 MarkDuplicates Tracking 109872 as yet unmatched pairs. 56019 records in RAM.
INFO 2026-06-08 09:03:16 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr22:21,672,319
INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 107279 as yet unmatched pairs. 53425 records in RAM.
INFO 2026-06-08 09:03:17 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr22:23,273,669
INFO 2026-06-08 09:03:17 MarkDuplicates Tracking 104961 as yet unmatched pairs. 51102 records in RAM.
INFO 2026-06-08 09:03:19 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr22:24,628,087
INFO 2026-06-08 09:03:19 MarkDuplicates Tracking 101556 as yet unmatched pairs. 47697 records in RAM.
INFO 2026-06-08 09:03:20 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr22:28,800,315
INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 99424 as yet unmatched pairs. 45563 records in RAM.
INFO 2026-06-08 09:03:22 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,816
INFO 2026-06-08 09:03:22 MarkDuplicates Tracking 95711 as yet unmatched pairs. 41849 records in RAM.
INFO 2026-06-08 09:03:23 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr22:30,626,499
INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 92978 as yet unmatched pairs. 39111 records in RAM.
INFO 2026-06-08 09:03:26 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 2s. Last read position: chr22:32,493,169
INFO 2026-06-08 09:03:26 MarkDuplicates Tracking 89924 as yet unmatched pairs. 36043 records in RAM.
INFO 2026-06-08 09:03:27 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr22:36,265,632
INFO 2026-06-08 09:03:27 MarkDuplicates Tracking 87587 as yet unmatched pairs. 33696 records in RAM.
INFO 2026-06-08 09:03:29 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr22:37,024,742
INFO 2026-06-08 09:03:29 MarkDuplicates Tracking 84013 as yet unmatched pairs. 30121 records in RAM.
INFO 2026-06-08 09:03:31 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 2s. Last read position: chr22:38,114,520
INFO 2026-06-08 09:03:31 MarkDuplicates Tracking 80823 as yet unmatched pairs. 26927 records in RAM.
INFO 2026-06-08 09:03:32 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr22:39,133,884
INFO 2026-06-08 09:03:32 MarkDuplicates Tracking 77878 as yet unmatched pairs. 23976 records in RAM.
INFO 2026-06-08 09:03:34 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr22:40,881,855
INFO 2026-06-08 09:03:34 MarkDuplicates Tracking 75384 as yet unmatched pairs. 21475 records in RAM.
INFO 2026-06-08 09:03:35 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr22:41,583,962
INFO 2026-06-08 09:03:35 MarkDuplicates Tracking 72350 as yet unmatched pairs. 18439 records in RAM.
INFO 2026-06-08 09:03:37 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr22:42,518,021
INFO 2026-06-08 09:03:37 MarkDuplicates Tracking 69718 as yet unmatched pairs. 15798 records in RAM.
INFO 2026-06-08 09:03:38 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr22:45,502,991
INFO 2026-06-08 09:03:38 MarkDuplicates Tracking 67173 as yet unmatched pairs. 13251 records in RAM.
INFO 2026-06-08 09:03:40 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr22:46,463,954
INFO 2026-06-08 09:03:40 MarkDuplicates Tracking 63352 as yet unmatched pairs. 9429 records in RAM.
INFO 2026-06-08 09:03:41 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr22:50,276,846
INFO 2026-06-08 09:03:41 MarkDuplicates Tracking 59687 as yet unmatched pairs. 5759 records in RAM.
INFO 2026-06-08 09:03:43 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr22:50,526,109
INFO 2026-06-08 09:03:43 MarkDuplicates Tracking 55715 as yet unmatched pairs. 1783 records in RAM.
INFO 2026-06-08 09:03:45 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 2s. Last read position: chrX:2,934,960
INFO 2026-06-08 09:03:45 MarkDuplicates Tracking 52215 as yet unmatched pairs. 47895 records in RAM.
INFO 2026-06-08 09:03:46 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chrX:10,474,623
INFO 2026-06-08 09:03:46 MarkDuplicates Tracking 49595 as yet unmatched pairs. 45275 records in RAM.
INFO 2026-06-08 09:03:48 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chrX:18,604,134
INFO 2026-06-08 09:03:48 MarkDuplicates Tracking 46821 as yet unmatched pairs. 42479 records in RAM.
INFO 2026-06-08 09:03:49 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chrX:24,068,090
INFO 2026-06-08 09:03:49 MarkDuplicates Tracking 44660 as yet unmatched pairs. 40318 records in RAM.
INFO 2026-06-08 09:03:51 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chrX:40,599,669
INFO 2026-06-08 09:03:51 MarkDuplicates Tracking 42442 as yet unmatched pairs. 38099 records in RAM.
INFO 2026-06-08 09:03:52 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chrX:45,069,908
INFO 2026-06-08 09:03:52 MarkDuplicates Tracking 38872 as yet unmatched pairs. 34525 records in RAM.
INFO 2026-06-08 09:03:54 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chrX:47,565,016
INFO 2026-06-08 09:03:54 MarkDuplicates Tracking 35869 as yet unmatched pairs. 31521 records in RAM.
INFO 2026-06-08 09:03:55 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chrX:48,934,855
INFO 2026-06-08 09:03:55 MarkDuplicates Tracking 33089 as yet unmatched pairs. 28739 records in RAM.
INFO 2026-06-08 09:03:56 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chrX:53,086,062
INFO 2026-06-08 09:03:56 MarkDuplicates Tracking 29853 as yet unmatched pairs. 25503 records in RAM.
INFO 2026-06-08 09:03:58 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chrX:53,592,481
INFO 2026-06-08 09:03:58 MarkDuplicates Tracking 27107 as yet unmatched pairs. 22754 records in RAM.
INFO 2026-06-08 09:03:59 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chrX:65,731,931
INFO 2026-06-08 09:03:59 MarkDuplicates Tracking 24333 as yet unmatched pairs. 19980 records in RAM.
INFO 2026-06-08 09:04:01 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chrX:71,299,935
INFO 2026-06-08 09:04:01 MarkDuplicates Tracking 21972 as yet unmatched pairs. 17619 records in RAM.
INFO 2026-06-08 09:04:02 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chrX:77,616,661
INFO 2026-06-08 09:04:02 MarkDuplicates Tracking 19145 as yet unmatched pairs. 14791 records in RAM.
INFO 2026-06-08 09:04:04 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chrX:101,656,219
INFO 2026-06-08 09:04:04 MarkDuplicates Tracking 16119 as yet unmatched pairs. 11763 records in RAM.
INFO 2026-06-08 09:04:05 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chrX:121,296,337
INFO 2026-06-08 09:04:05 MarkDuplicates Tracking 13515 as yet unmatched pairs. 9157 records in RAM.
INFO 2026-06-08 09:04:07 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chrX:147,912,210
INFO 2026-06-08 09:04:07 MarkDuplicates Tracking 11701 as yet unmatched pairs. 7343 records in RAM.
INFO 2026-06-08 09:04:08 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chrX:153,956,244
INFO 2026-06-08 09:04:08 MarkDuplicates Tracking 8417 as yet unmatched pairs. 4059 records in RAM.
INFO 2026-06-08 09:04:10 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chrX:154,532,203
INFO 2026-06-08 09:04:10 MarkDuplicates Tracking 5041 as yet unmatched pairs. 682 records in RAM.
INFO 2026-06-08 09:04:11 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,657
INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 2379 as yet unmatched pairs. 140 records in RAM.
INFO 2026-06-08 09:04:12 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: KI270733.1:125,719
INFO 2026-06-08 09:04:12 MarkDuplicates Tracking 2159 as yet unmatched pairs. 2007 records in RAM.
INFO 2026-06-08 09:04:13 MarkDuplicates Read 642,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,240
INFO 2026-06-08 09:04:13 MarkDuplicates Tracking 165 as yet unmatched pairs. 13 records in RAM.
INFO 2026-06-08 09:04:14 MarkDuplicates Read 642302908 records. 0 pairs never matched.
INFO 2026-06-08 09:05:00 MarkDuplicates After buildSortedReadEndLists freeMemory: 204140632; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:05:00 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:05:03 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:05:03 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:05:04 OpticalDuplicateFinder Large duplicate set. size = 1297
INFO 2026-06-08 09:05:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,843
INFO 2026-06-08 09:05:04 OpticalDuplicateFinder Large duplicate set. size = 1349
INFO 2026-06-08 09:05:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,211
INFO 2026-06-08 09:05:12 OpticalDuplicateFinder Large duplicate set. size = 1175
INFO 2026-06-08 09:05:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,162
INFO 2026-06-08 09:05:12 OpticalDuplicateFinder Large duplicate set. size = 1027
INFO 2026-06-08 09:05:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,278
INFO 2026-06-08 09:05:12 OpticalDuplicateFinder Large duplicate set. size = 1184
INFO 2026-06-08 09:05:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,888
INFO 2026-06-08 09:05:13 OpticalDuplicateFinder Large duplicate set. size = 1624
INFO 2026-06-08 09:05:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,666
INFO 2026-06-08 09:05:13 OpticalDuplicateFinder Large duplicate set. size = 1366
INFO 2026-06-08 09:05:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,475
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder Large duplicate set. size = 1382
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,448
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder Large duplicate set. size = 1348
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,965
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder Large duplicate set. size = 1099
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,534
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder Large duplicate set. size = 1422
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,360
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder Large duplicate set. size = 1022
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,378
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder Large duplicate set. size = 1227
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,216
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder Large duplicate set. size = 3000
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,952
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,852
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,535
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder Large duplicate set. size = 1840
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,575
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder Large duplicate set. size = 2994
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,749
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,876
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder Large duplicate set. size = 1211
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,376
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder Large duplicate set. size = 2809
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,178
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,109
INFO 2026-06-08 09:05:22 OpticalDuplicateFinder Large duplicate set. size = 4212
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,152
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,228
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,451
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,576
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder Large duplicate set. size = 1083
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,444
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder Large duplicate set. size = 1032
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,770
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder Large duplicate set. size = 1438
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,065
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder Large duplicate set. size = 1230
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,707
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder Large duplicate set. size = 1149
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,688
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder Large duplicate set. size = 1183
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,863
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder Large duplicate set. size = 1642
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,721
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder Large duplicate set. size = 2081
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,752
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,833
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder Large duplicate set. size = 1120
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,752
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder Large duplicate set. size = 1123
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,747
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder Large duplicate set. size = 1263
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,556
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder Large duplicate set. size = 1131
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,028
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder Large duplicate set. size = 1125
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,535
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder Large duplicate set. size = 1121
INFO 2026-06-08 09:05:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,593
INFO 2026-06-08 09:05:27 OpticalDuplicateFinder Large duplicate set. size = 2298
INFO 2026-06-08 09:05:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,531
INFO 2026-06-08 09:05:27 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,863
INFO 2026-06-08 09:05:27 OpticalDuplicateFinder Large duplicate set. size = 1154
INFO 2026-06-08 09:05:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,139
INFO 2026-06-08 09:05:32 OpticalDuplicateFinder Large duplicate set. size = 1027
INFO 2026-06-08 09:05:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,147
INFO 2026-06-08 09:05:47 OpticalDuplicateFinder Large duplicate set. size = 1004
INFO 2026-06-08 09:05:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,954
INFO 2026-06-08 09:05:47 OpticalDuplicateFinder Large duplicate set. size = 1507
INFO 2026-06-08 09:05:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,378
INFO 2026-06-08 09:05:47 OpticalDuplicateFinder Large duplicate set. size = 1457
INFO 2026-06-08 09:05:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,780
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1609
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,882
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1146
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,294
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1595
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,611
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1724
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,397
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1201
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,853
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1357
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,559
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1188
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,869
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1035
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,504
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1135
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,459
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1159
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,358
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1004
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,108
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1277
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,507
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1285
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,812
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1117
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,764
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1466
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,659
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1068
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,663
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1107
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,414
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1644
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,341
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1419
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,175
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1983
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,890
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1055
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,960
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1195
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,656
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1333
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,209
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder Large duplicate set. size = 1030
INFO 2026-06-08 09:05:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,679
INFO 2026-06-08 09:05:49 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-08 09:05:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,347
INFO 2026-06-08 09:05:49 OpticalDuplicateFinder Large duplicate set. size = 1224
INFO 2026-06-08 09:05:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,461
INFO 2026-06-08 09:05:49 OpticalDuplicateFinder Large duplicate set. size = 1147
INFO 2026-06-08 09:05:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,431
INFO 2026-06-08 09:05:49 OpticalDuplicateFinder Large duplicate set. size = 1220
INFO 2026-06-08 09:05:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,754
INFO 2026-06-08 09:05:49 OpticalDuplicateFinder Large duplicate set. size = 1417
INFO 2026-06-08 09:05:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,769
INFO 2026-06-08 09:05:49 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-08 09:05:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,739
INFO 2026-06-08 09:05:56 OpticalDuplicateFinder Large duplicate set. size = 1354
INFO 2026-06-08 09:05:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,443
INFO 2026-06-08 09:06:11 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:06:11 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:07:14 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:07:23 MarkDuplicates After generateDuplicateIndexes freeMemory: 10792627024; totalMemory: 26742882304; maxMemory: 63585648640
INFO 2026-06-08 09:07:23 MarkDuplicates Marking 265746348 records as duplicates.
INFO 2026-06-08 09:07:23 MarkDuplicates Found 6884029 optical duplicate clusters.
INFO 2026-06-08 09:07:23 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:07:40 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:25,823,643
INFO 2026-06-08 09:07:56 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:32s. Time for last 10,000,000: 15s. Last read position: chr1:64,866,884
INFO 2026-06-08 09:08:11 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:47s. Time for last 10,000,000: 15s. Last read position: chr1:149,852,903
INFO 2026-06-08 09:08:27 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:03s. Time for last 10,000,000: 15s. Last read position: chr1:161,542,556
INFO 2026-06-08 09:08:42 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:18s. Time for last 10,000,000: 15s. Last read position: chr1:207,767,164
INFO 2026-06-08 09:08:57 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:33s. Time for last 10,000,000: 15s. Last read position: chr2:32,545,724
INFO 2026-06-08 09:09:13 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:49s. Time for last 10,000,000: 15s. Last read position: chr2:64,636,561
INFO 2026-06-08 09:09:28 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:04s. Time for last 10,000,000: 15s. Last read position: chr2:110,526,331
INFO 2026-06-08 09:09:43 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:19s. Time for last 10,000,000: 15s. Last read position: chr2:172,476,476
INFO 2026-06-08 09:09:59 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:35s. Time for last 10,000,000: 15s. Last read position: chr2:217,818,581
INFO 2026-06-08 09:10:14 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:50s. Time for last 10,000,000: 15s. Last read position: chr3:39,406,739
INFO 2026-06-08 09:10:30 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:06s. Time for last 10,000,000: 15s. Last read position: chr3:101,853,448
INFO 2026-06-08 09:10:45 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:21s. Time for last 10,000,000: 15s. Last read position: chr3:154,129,670
INFO 2026-06-08 09:11:00 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:36s. Time for last 10,000,000: 15s. Last read position: chr4:5,456,910
INFO 2026-06-08 09:11:16 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:52s. Time for last 10,000,000: 15s. Last read position: chr4:121,678,438
INFO 2026-06-08 09:11:32 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:08s. Time for last 10,000,000: 15s. Last read position: chr5:70,970,354
INFO 2026-06-08 09:11:47 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:23s. Time for last 10,000,000: 15s. Last read position: chr5:150,402,568
INFO 2026-06-08 09:12:03 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:39s. Time for last 10,000,000: 15s. Last read position: chr6:2,833,820
INFO 2026-06-08 09:12:18 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:54s. Time for last 10,000,000: 15s. Last read position: chr6:31,767,190
INFO 2026-06-08 09:12:33 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:09s. Time for last 10,000,000: 15s. Last read position: chr6:47,253,265
INFO 2026-06-08 09:12:48 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:24s. Time for last 10,000,000: 15s. Last read position: chr6:149,378,764
INFO 2026-06-08 09:13:04 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:40s. Time for last 10,000,000: 15s. Last read position: chr7:35,673,240
INFO 2026-06-08 09:13:19 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:05:55s. Time for last 10,000,000: 15s. Last read position: chr7:92,045,175
INFO 2026-06-08 09:13:34 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:10s. Time for last 10,000,000: 15s. Last read position: chr7:127,698,928
INFO 2026-06-08 09:13:49 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:25s. Time for last 10,000,000: 15s. Last read position: chr7:152,162,444
INFO 2026-06-08 09:14:05 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:41s. Time for last 10,000,000: 15s. Last read position: chr8:47,961,646
INFO 2026-06-08 09:14:20 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:06:56s. Time for last 10,000,000: 15s. Last read position: chr8:130,179,288
INFO 2026-06-08 09:14:35 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:11s. Time for last 10,000,000: 15s. Last read position: chr9:33,472,380
INFO 2026-06-08 09:14:50 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:26s. Time for last 10,000,000: 15s. Last read position: chr9:128,179,139
INFO 2026-06-08 09:15:06 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:42s. Time for last 10,000,000: 15s. Last read position: chr10:32,034,714
INFO 2026-06-08 09:15:21 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:07:57s. Time for last 10,000,000: 15s. Last read position: chr10:90,894,871
INFO 2026-06-08 09:15:36 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:12s. Time for last 10,000,000: 15s. Last read position: chr11:314,329
INFO 2026-06-08 09:15:51 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:27s. Time for last 10,000,000: 15s. Last read position: chr11:57,802,081
INFO 2026-06-08 09:16:06 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:42s. Time for last 10,000,000: 15s. Last read position: chr11:68,892,235
INFO 2026-06-08 09:16:22 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:08:58s. Time for last 10,000,000: 16s. Last read position: chr12:878,314
INFO 2026-06-08 09:16:38 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:14s. Time for last 10,000,000: 15s. Last read position: chr12:45,852,290
INFO 2026-06-08 09:16:53 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:29s. Time for last 10,000,000: 15s. Last read position: chr12:56,617,487
INFO 2026-06-08 09:17:08 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:44s. Time for last 10,000,000: 15s. Last read position: chr12:98,599,955
INFO 2026-06-08 09:17:24 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:00s. Time for last 10,000,000: 15s. Last read position: chr13:21,140,615
INFO 2026-06-08 09:17:39 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:15s. Time for last 10,000,000: 15s. Last read position: chr14:24,137,142
INFO 2026-06-08 09:17:54 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:30s. Time for last 10,000,000: 15s. Last read position: chr14:75,280,857
INFO 2026-06-08 09:18:09 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:10:45s. Time for last 10,000,000: 14s. Last read position: chr14:105,741,624
INFO 2026-06-08 09:18:24 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:00s. Time for last 10,000,000: 14s. Last read position: chr15:41,669,797
INFO 2026-06-08 09:18:39 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:15s. Time for last 10,000,000: 15s. Last read position: chr15:78,105,760
INFO 2026-06-08 09:18:54 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:30s. Time for last 10,000,000: 14s. Last read position: chr16:3,767,847
INFO 2026-06-08 09:19:09 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:11:45s. Time for last 10,000,000: 15s. Last read position: chr16:22,534,739
INFO 2026-06-08 09:19:24 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:00s. Time for last 10,000,000: 15s. Last read position: chr16:56,510,879
INFO 2026-06-08 09:19:39 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:15s. Time for last 10,000,000: 15s. Last read position: chr16:89,508,564
INFO 2026-06-08 09:19:55 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:12:31s. Time for last 10,000,000: 15s. Last read position: chr17:28,361,271
INFO 2026-06-08 09:20:10 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:12:46s. Time for last 10,000,000: 15s. Last read position: chr17:42,698,713
INFO 2026-06-08 09:20:25 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:01s. Time for last 10,000,000: 15s. Last read position: chr17:60,656,829
INFO 2026-06-08 09:20:40 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:16s. Time for last 10,000,000: 15s. Last read position: chr17:81,511,933
INFO 2026-06-08 09:20:55 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:13:32s. Time for last 10,000,000: 15s. Last read position: chr19:1,440,076
INFO 2026-06-08 09:21:11 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:13:47s. Time for last 10,000,000: 15s. Last read position: chr19:8,978,328
INFO 2026-06-08 09:21:26 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:02s. Time for last 10,000,000: 14s. Last read position: chr19:34,428,509
INFO 2026-06-08 09:21:41 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:17s. Time for last 10,000,000: 14s. Last read position: chr19:42,351,288
INFO 2026-06-08 09:21:56 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:14:32s. Time for last 10,000,000: 15s. Last read position: chr19:55,230,795
INFO 2026-06-08 09:22:11 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:14:47s. Time for last 10,000,000: 15s. Last read position: chr20:38,155,963
INFO 2026-06-08 09:22:26 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:02s. Time for last 10,000,000: 15s. Last read position: chr20:62,328,420
INFO 2026-06-08 09:22:40 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:15:16s. Time for last 10,000,000: 14s. Last read position: chr21:43,753,586
INFO 2026-06-08 09:22:55 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:15:31s. Time for last 10,000,000: 14s. Last read position: chr22:32,493,169
INFO 2026-06-08 09:23:10 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:15:46s. Time for last 10,000,000: 15s. Last read position: chr22:50,276,846
INFO 2026-06-08 09:23:25 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:16:01s. Time for last 10,000,000: 14s. Last read position: chrX:53,086,062
INFO 2026-06-08 09:23:40 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:16:16s. Time for last 10,000,000: 14s. Last read position: GL000220.1:115,657
INFO 2026-06-08 09:23:52 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:23:52 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:23:52 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:23:52 MarkDuplicates Before output close freeMemory: 201988464; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:23:52 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:23:52 MarkDuplicates After output close freeMemory: 104096304; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:23:52 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 40.33 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory