Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/ae00f87d1d1af1be0e987fb85cead1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/bfe1b1eae8d92a160221a72fd9d493/1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/ae00f87d1d1af1be0e987fb85cead1/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/8f22cd1f1613e6c0849815dca5d60b/1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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