Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/2274b24408eff1aeda31d3f7770c0d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/a91fac1d74a378ef41dfe3f74f46af/1173_RQT_T1_RNA_SLD_01_A23T55JLT4_2.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/2274b24408eff1aeda31d3f7770c0d/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory