Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/f28a13093f7b18fd210b921c3a43d6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/f28a13093f7b18fd210b921c3a43d6/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/9d6b9f275e733bdbb5153f6649e4a7/1173_M4Y_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/28e9ad8180324d4454c1f8f9abf9bd/1173_M4Y_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/28e9ad8180324d4454c1f8f9abf9bd/1173_M4Y_T1_RNA_SLD_01_A23T55JLT4_1_2.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.DjfA2JGmdp/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.DjfA2JGmdp/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary
-sample contains 147944603 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.DjfA2JGmdp/ctat_genome_lib_build_dir  -J /tmp/nxf.DjfA2JGmdp/1173_M4Y_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction  -O /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.DjfA2JGmdp/1173_M4Y_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.DjfA2JGmdp/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

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[266-building interval tree based on /tmp/nxf.DjfA2JGmdp/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

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[3210000], rate=89415.04/min 
[3220000], rate=89403.05/min 
[3230000], rate=89391.14/min 
[3240000], rate=89420.42/min -building interval tree based on /tmp/nxf.DjfA2JGmdp/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

[10000], rate=100000.00/min 
[20000], rate=109090.91/min 
[30000], rate=105882.35/min 
[40000], rate=96000.00/min 
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[1500000], rate=68078.67/min 
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[2560000], rate=72658.47/min 
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[2670000], rate=71967.65/min 
[2680000], rate=71978.51/min 
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[2700000], rate=71968.01/min 
[2710000], rate=71946.90/mi0000], rate=94326.24/min 
[2670000], rate=94235.29/min 
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[2740000], rate=93782.09/min 
[2750000], rate=93803.30/min 
[2760000], rate=93718.17/min 
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[2780000], rate=93707.87/min 
[2790000], rate=93729.00/min 
[2800000], rate=93854.75/min 
[2810000], rate=93823.04/min 
[2820000], rate=93843.59/min 
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[2840000], rate=93936.05/min 
[2850000], rate=93956.04/min 
[2860000], rate=94027.40/min 
[2870000], rate=94098.36/min 
[2880000], rate=94168.94/min 
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[2950000], rate=93601.27/min 
[2960000], rate=93130.57/min 
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[2990000], rate=90973.63/min 
[3000000], rate=90406.83/min 
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[3030000], rate=88467.15/min 
[3040000], rate=88073.39/min 
[3050000], rate=87727.71/min 
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[3080000], rate=86395.51/min 
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[3100000], rate=85556.58/min 
[3110000], rate=85244.40/min 
[3120000], rate=84897.96/min 
[3130000], rate=84556.51/min 
[3140000], rate=84219.94/min 
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[3160000], rate=83487.45/min 
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[3180000], rate=82776.57/min 
[3190000], rate=82145.92/min 
[3200000], rate=81528.66/min 
[3210000], rate=81094.74/min -building interval tree based on /tmp/nxf.DjfA2JGmdp/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=40000.00/min 
[20000], rate=38709.68/min 
[30000], rate=39130.43/min 
[40000], rate=38709.68/min 
[50000], rate=37974.68/min 
[60000], rate=39560.44/min 
[70000], rate=39252.34/min 
[80000], rate=40000.00/min 
[90000], rate=41538.46/min 
[100000], rate=42553.19/min 
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[1000000], rate=63761.96/min 
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[1100000], rate=66331.66/min 
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[1130000], rate=67328.70/min 
[1140000], rate=67322.83/min 
[1150000], rate=67317.07/min 
[1160000], rate=67311.41/min 
[1170000], rate=67305.85/min 
[1180000], rate=67428.57/min 
[1190000], rate=67422.10/min 
[1200000], rate=67478.91/min 
[1210000], rate=67534.88/min 
[1220000], rate=67590.03/min 
[1230000], rate=67706.42/min 
[1240000], rate=67759.56/min 
[1250000], rate=67873.30/min 
[1260000], rate=68108.11/min 
[1270000], rate=68218.44/min 
[1280000], rate=68388.25/min 
[1290000], rate=68556.24/min 
[1300000], rate=68904.59/min 
[1310000], rate=69068.54/min 
[1320000], rate=69170.31/min 
[1330000], rate=69391.30/min 
[1340000], rate=69490.06/min 
[1350000], rate=69767.44/min 
[1360000], rate=70103.09/min 
[1370000], rate=70316.51/min 
[1380000], rate=70528.11/min 
[1390000], rate=70677.97/min 
[1400000], rate=70886.08/min 
[1410000], rate=71092.44/min 
[1420000], rate=70881.86/min 
[1430000], rate=70675.45/min 
[1440000], rate=70473.08/min 
[1450000], rate=70388.35/min 
[1460000], rate=70192.31/min 
[1470000], rate=70055.60/min 
[1480000], rate=69921.26/min 
[1490000], rate=69898.36/min 
[1500000], rate=70093.46/min 
[1510000], rate=70287.04/min 
[1520000], rate=70153.85/min 
[1530000], rate=70022.88/min 
[1540000], rate=69894.10/min 
[1550000], rate=69819.82/min 
[1560000], rate=69694.71/min 
[1570000], rate=69674.56/min 
[1580000], rate=69603.52/min 
[1590000], rate=69533.53/min 
[1600000], rate=69414.32/min 
[1610000], rate=69396.55/min 
[1620000], rate=69379.01/min 
[1630000], rate=69361.70/min 
[1640000], rate=69295.77/min 
[1650000], rate=69327.73/min 
[1660000], rate=69311.06/min 
[1670000], rate=69294.61/min 
[1680000], rate=69326.00/min 
[1690000], rate=69309.64/min 
[1700000], rate=69246.44/min 
[1710000], rate=69230.77/min 
[1720000], rate=69308.26/min 
[1730000], rate=69292.39/min 
[1740000], rate=69184.89/min 
[1750000], rate=69169.96/min 
[1760000], rate=69155.21/min 
[1770000], rate=69185.67/min 
[1780000], rate=69170.98/min 
[1790000], rate=69245.65/min 
[1800000], rate=69230.77/min 
[1810000], rate=69216.06/min 
[1820000], rate=69201.52/min 
[1830000], rate=69230.77/min 
[1840000], rate=69259.72/min 
[1850000], rate=69288.39/min 
[1860000], rate=69273.74/min 
[1870000], rate=69259.26/min 
[1880000], rate=69330.06/min 
[1890000], rate=69357.80/min 
[1900000], rate=69385.27/min 
[1910000], rate=69412.48/min 
[1920000], rate=69439.42/min 
[1930000], rate=69507.80/min 
[1940000], rate=69575.61/min 
[1950000], rate=69642.86/min 
[1960000], rate=69750.89/min 
[1970000], rate=69858.16/min 
[1980000], rate=69923.48/min 
[1990000], rate=70070.42/min 
[2000000], rate=70216.50/min 
[2010000], rate=70402.80/min 
[2020000], rate=70506.11/min 
[2030000], rate=70649.65/min 
[2040000], rate=70874.35/min 
[2050000], rate=70975.19/min 
[2060000], rate=71116.23/min 
[2070000], rate=71256.45/min 
[2080000], rate=71355.06/min 
[2090000], rate=71575.34/min 
[2100000], rate=71672.35/min 
[2110000], rate=71606.33/min 
[2120000], rate=71460.67/min 
[2130000], rate=71356.78/min 
[2140000], rate=71175.17/min 
[2150000], rate=70957.10/min 
[2160000], rate=70819.67/min 
[2170000], rate=70645.69/min 
[2180000], rate=70512.13/min 
[2190000], rate=70380.29/min 
[2200000], rate=70212.77/min 
[2210000], rate=70010.56/min 
[2220000], rate=69884.58/min 
[2230000], rate=69723.81/min 
[2240000], rate=69493.28/min 
[2250000], rate=69266.29/min 
[2260000], rate=69077.94/min 
[2270000], rate=68996.96/min 
[2280000], rate=68951.61/min 
[2290000], rate=68803.20/min 
[2300000], rate=68622.58/min 
[2310000], rate=68478.26/min 
[2320000], rate=68335.79/min 
[2330000], rate=68128.65/min 
[2340000], rate=68023.26/min 
[2350000], rate=67886.37/min 
[2360000], rate=67718.79/min 
[2370000], rate=67553.44/min 
[2380000], rate=67358.49/min 
[2390000], rate=67229.25/min 
[2400000], rate=67164.18/min 
[2410000], rate=67193.31/min 
[2420000], rate=67253.36/min 
[2430000], rate=67157.99/min 
[2440000], rate=67002.29/min 
[2450000], rate=66909.42/min 
[2460000], rate=66787.33/min 
[2470000], rate=66636.69/min 
[2480000], rate=66547.41/min 
[2490000], rate=66518.25/min 
[2500000], rate=66430.47/min 
[2510000], rate=66372.85/min 
[2520000], rate=66257.67/min 
[2530000], rate=66057.44/min 
[2540000], rate=65916.96/min 
[2550000], rate=65806.45/min 
[2560000], rate=65753.42/min 
[2570000], rate=65672.91/min 
[2580000], rate=65593.22/min 
[2590000], rate=65569.62/min 
[2600000], rate=65491.18/min 
[2610000], rate=65141.43/min 
[2620000], rate=65120.13/min 
[2630000], rate=65045.34/min 
[2640000], rate=64971.29/min 
[2650000], rate=64924.46/min 
[2660000], rate=64851.69/min 
[2670000], rate=64727.27/min 
[2680000], rate=64630.23/min 
[2690000], rate=64585.83/min 
[2700000], rate=64516.13/min 
[2710000], rate=64396.04/min 
n 
[2720000], rate=72021.18/min 
[2730000], rate=72031.66/min 
[2740000], rate=72010.51/min 
[2750000], rate=72052.40/min 
[2760000], rate=72062.66/min 
[2770000], rate=72104.12/min 
[2780000], rate=72239.06/min 
[2790000], rate=72467.53/min 
[2800000], rate=72727.27/min 
[2810000], rate=72892.35/min 
[2820000], rate=72931.03/min 
[2830000], rate=73000.86/min 
[2840000], rate=73070.33/min 
[2850000], rate=73108.17/min 
[2860000], rate=73176.97/min 
[2870000], rate=73245.43/min 
[2880000], rate=73282.44/min 
[2890000], rate=73350.25/min 
[2900000], rate=73386.76/min 
[2910000], rate=73453.93/min 
[2920000], rate=73366.83/min 
[2930000], rate=73219.49/min 
[2940000], rate=73195.02/min 
[2950000], rate=73170.73/min 
[2960000], rate=73206.92/min 
[2970000], rate=73122.69/min 
[2980000], rate=73069.06/min 
[2990000], rate=73075.36/min 
[3000000], rate=73081.61/min 
[3010000], rate=73058.25/min 
[3020000], rate=73093.99/min 
[3030000], rate=73217.88/min 
[3040000], rate=73164.86/min 
[3050000], rate=73112.27/min 
[3060000], rate=73118.28/min 
[3070000], rate=73153.30/min 
[3080000], rate=73188.12/min 
[3090000], rate=73193.84/min 
[3100000], rate=73314.94/min 
[3110000], rate=73435.66/min 
[3120000], rate=73584.91/min 
[3130000], rate=73762.77/min 
[3140000], rate=73882.35/min 
[3150000], rate=73972.60/min 
[3160000], rate=74062.50/min 
[3170000], rate=74123.15/min 
[3180000], rate=74183.51/min 
[3190000], rate=74186.05/min 
[3200000], rate=74131.27/min 
[3210000], rate=74191.06/min [2720000], rate=64302.60/min 
[2730000], rate=64210.11/min 
[2740000], rate=64093.57/min 
[2750000], rate=64027.94/min 
[2760000], rate=64037.12/min 
[2770000], rate=63972.29/min 
[2780000], rate=63932.54/min 
[2790000], rate=63868.75/min 
[2800000], rate=63805.55/min 
[2810000], rate=63767.02/min 
[2820000], rate=63680.84/min 
[2830000], rate=63595.51/min 
[2840000], rate=63534.68/min 
[2850000], rate=63474.39/min 
[2860000], rate=63414.63/min 
[2870000], rate=63308.82/min 
[2880000], rate=63227.22/min 
[2890000], rate=63215.46/min 
[2900000], rate=63203.78/min 
[2910000], rate=63215.06/min 
[2920000], rate=63226.27/min 
[2930000], rate=63214.67/min 
[2940000], rate=63248.48/min 
[2950000], rate=63079.12/min 
[2960000], rate=63090.59/min 
[2970000], rate=63079.65/min 
[2980000], rate=63068.78/min 
[2990000], rate=63035.84/min 
[3000000], rate=63047.29/min 
[3010000], rate=63058.66/min 
[3020000], rate=63069.96/min 
[3030000], rate=63081.19/min 
[3040000], rate=63114.19/min 
[3050000], rate=63190.61/min 
[3060000], rate=63201.38/min 
[3070000], rate=63190.39/min 
[3080000], rate=63222.72/min 
[3090000], rate=63233.29/min 
[3100000], rate=63286.83/min 
[3110000], rate=63318.63/min 
[3120000], rate=63350.25/min 
[3130000], rate=63360.32/min 
[3140000], rate=63370.33/min 
[3150000], rate=63359.03/min 
[3160000], rate=63411.37/min 
[3170000], rate=63421.14/min 
[3180000], rate=63451.95/min 
[3190000], rate=63503.65/min 
[3200000], rate=63534.08/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.DjfA2JGmdp/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 6000000.00 reads per min processed...  
 12000000.00 reads per min processed...  
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 13200000.00 reads per min processed...  
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 12000000.00 reads per min processed...  
 12857142.86 reads per min processed...  
 13714285.71 reads per min processed...  
 11333333.33 reads per min processed...  
 10800000.00 reads per min processed...  
 9500000.00 reads per min processed...  
 8571428.57 reads per min processed...  
 7875000.00 reads per min processed...  
 7764705.88 reads per min processed...  
 7263157.89 reads per min processed...  
 7200000.00 reads per min processed...  
 6818181.82 reads per min processed...  
 6500000.00 reads per min processed...  
 6230769.23 reads per min processed...  
 6222222.22 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 5812500.00 reads per min processed...  
 5647058.82 reads per min processed...  
 5657142.86 reads per min processed...  
 5513513.51 reads per min processed...  
 5384615.38 reads per min processed...  
 5268292.68 reads per min processed...  
 5162790.70 reads per min processed...  
 5066666.67 reads per min processed...  
 5086956.52 reads per min processed...  
 5000000.00 reads per min processed...  
 4920000.00 reads per min processed...  
 4846153.85 reads per min processed...  
 4777777.78 reads per min processed...  
 4800000.00 reads per min processed...  
 4736842.11 reads per min processed...  
 4677966.10 reads per min processed...  
 4622950.82 reads per min processed...  
 4645161.29 reads per min processed...  
 4593750.00 reads per min processed...  
 4615384.62 reads per min processed...  
 4567164.18 reads per min processed...  
 4588235.29 reads per min processed...  
 4542857.14 reads per min processed...  
 4563380.28 reads per min processed...  
 4520547.95 reads per min processed...  
 4480000.00 reads per min processed...  
 4500000.00 reads per min processed...  
 4461538.46 reads per min processed...  
 4481012.66 reads per min processed...  
 4500000.00 reads per min processed...  
 4463414.63 reads per min processed...  
 4481927.71 reads per min processed...  
 4500000.00 reads per min processed...  
 4517647.06 reads per min processed...  
 4534883.72 reads per min processed...  
 4604651.16 reads per min processed...  
 4620689.66 reads per min processed...  
 4689655.17 reads per min processed...  
 4704545.45 reads per min processed...  
 4772727.27 reads per min processed...  
 4786516.85 reads per min processed...  
 4853932.58 reads per min processed...  
 4866666.67 reads per min processed...  
 4933333.33 reads per min processed...  
 4945054.95 reads per min processed...  
 5010989.01 reads per min processed...  
 5076923.08 reads per min processed...  
 5086956.52 reads per min processed...  
 5096774.19 reads per min processed...  
 5052631.58 reads per min processed...  
 5010309.28 reads per min processed...  
 5020408.16 reads per min processed...  
 4980000.00 reads per min processed...  
 4941176.47 reads per min processed...  
 4951456.31 reads per min processed...  
 4914285.71 reads per min processed...  
 4878504.67 reads per min processed...  
 4888888.89 reads per min processed...  
 4854545.45 reads per min processed...  
 4864864.86 reads per min processed...  
 4875000.00 reads per min processed...  
 4842105.26 reads per min processed...  
 4810344.83 reads per min processed...  
 4862068.97 reads per min processed...  
 4871794.87 reads per min processed...  
 4840336.13 reads per min processed...  
 4850000.00 reads per min processed...  
 4819672.13 reads per min processed...  
 4829268.29 reads per min processed...  
 4800000.00 reads per min processed...  
 4809523.81 reads per min processed...  
 4781250.00 reads per min processed...  
 4790697.67 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.DjfA2JGmdp/1173_M4Y_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.DjfA2JGmdp/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -444706.255715
EM: Round [1] log likelihood: -443737.491325
EM: Round [2] log likelihood: -443412.844865
EM: Round [3] log likelihood: -443264.824282
EM: Round [4] log likelihood: -443187.181060
EM: Round [5] log likelihood: -443143.296494
EM: Round [6] log likelihood: -443117.114239
EM: Round [7] log likelihood: -443100.714400
EM: Round [8] log likelihood: -443089.960583
EM: Round [9] log likelihood: -443082.606808
EM: Round [10] log likelihood: -443077.387522
EM: Round [11] log likelihood: -443073.561960
EM: Round [12] log likelihood: -443070.679785
EM: Round [13] log likelihood: -443068.457082
EM: Round [14] log likelihood: -443066.708677
EM: Round [15] log likelihood: -443065.309972
EM: Round [16] log likelihood: -443064.174728
EM: Round [17] log likelihood: -443063.241736
EM: Round [18] log likelihood: -443062.466566
EM: Round [19] log likelihood: -443061.816326
EM: Round [20] log likelihood: -443061.266231
EM: Round [21] log likelihood: -443060.797318
EM: Round [22] log likelihood: -443060.394877
EM: Round [23] log likelihood: -443060.047353
EM: Round [24] log likelihood: -443059.745569
EM: Round [25] log likelihood: -443059.482164
EM: Round [26] log likelihood: -443059.251178
EM: Round [27] log likelihood: -443059.047745
EM: Round [28] log likelihood: -443058.867862
EM: Round [29] log likelihood: -443058.708211
EM: Round [30] log likelihood: -443058.566028
EM: Round [31] log likelihood: -443058.438990
EM: Round [32] log likelihood: -443058.325140
EM: Round [33] log likelihood: -443058.222816
EM: Round [34] log likelihood: -443058.130603
EM: Round [35] log likelihood: -443058.047290
EM: Round [36] log likelihood: -443057.971834
EM: Round [37] log likelihood: -443057.903336
EM: Round [38] log likelihood: -443057.841018
EM: Round [39] log likelihood: -443057.784203
EM: Round [40] log likelihood: -443057.732300
EM: Round [41] log likelihood: -443057.684793
EM: Round [42] log likelihood: -443057.641228
EM: Round [43] log likelihood: -443057.601207
EM: Round [44] log likelihood: -443057.564378
EM: Round [45] log likelihood: -443057.530429
EM: Round [46] log likelihood: -443057.499087
EM: Round [47] log likelihood: -443057.470104
EM: Round [48] log likelihood: -443057.443263
EM: Round [49] log likelihood: -443057.418370
EM: Round [50] log likelihood: -443057.395251
EM: Round [51] log likelihood: -443057.373749
EM: Round [52] log likelihood: -443057.353725
EM: Round [53] log likelihood: -443057.335053
EM: Round [54] log likelihood: -443057.317619
EM: Round [55] log likelihood: -443057.301323
EM: Round [56] log likelihood: -443057.286071
EM: Round [57] log likelihood: -443057.271779
EM: Round [58] log likelihood: -443057.258373
EM: Round [59] log likelihood: -443057.245783
EM: Round [60] log likelihood: -443057.233947
EM: Round [61] log likelihood: -443057.222809
EM: Round [62] log likelihood: -443057.212316
EM: Round [63] log likelihood: -443057.202421
EM: Round [64] log likelihood: -443057.193081
EM: Round [65] log likelihood: -443057.184256
EM: Round [66] log likelihood: -443057.175911
EM: Round [67] log likelihood: -443057.168012
EM: Round [68] log likelihood: -443057.160529
EM: Round [69] log likelihood: -443057.153433
EM: Round [70] log likelihood: -443057.146700
EM: Round [71] log likelihood: -443057.140305
EM: Round [72] log likelihood: -443057.134226
EM: Round [73] log likelihood: -443057.128444
EM: Round [74] log likelihood: -443057.122939
EM: Round [75] log likelihood: -443057.117695
EM: Round [76] log likelihood: -443057.112696
EM: Round [77] log likelihood: -443057.107926
EM: Round [78] log likelihood: -443057.103372
EM: Round [79] log likelihood: -443057.099021
EM: Round [80] log likelihood: -443057.094862
EM: Round [81] log likelihood: -443057.090883
EM: Round [82] log likelihood: -443057.087075
EM: Round [83] log likelihood: -443057.083428
EM: Round [84] log likelihood: -443057.079932
EM: Round [85] log likelihood: -443057.076580
EM: Round [86] log likelihood: -443057.073364
EM: Round [87] log likelihood: -443057.070277
EM: Round [88] log likelihood: -443057.067312
EM: Round [89] log likelihood: -443057.064462
EM: Round [90] log likelihood: -443057.061722
EM: Round [91] log likelihood: -443057.059087
EM: Round [92] log likelihood: -443057.056550
EM: Round [93] log likelihood: -443057.054107
EM: Round [94] log likelihood: -443057.051754
EM: Round [95] log likelihood: -443057.049487
EM: Round [96] log likelihood: -443057.047300
EM: Round [97] log likelihood: -443057.045191
EM: Round [98] log likelihood: -443057.043155
EM: Round [99] log likelihood: -443057.041190
EM: Round [100] log likelihood: -443057.039293
EM: Round [101] log likelihood: -443057.037459
EM: Round [102] log likelihood: -443057.035687
EM: Round [103] log likelihood: -443057.033973
EM: Round [104] log likelihood: -443057.032316
EM: Round [105] log likelihood: -443057.030712
EM: Round [106] log likelihood: -443057.029160
EM: Round [107] log likelihood: -443057.027657
EM: Round [108] log likelihood: -443057.026201
EM: Round [109] log likelihood: -443057.024791
EM: Round [110] log likelihood: -443057.023424
EM: Round [111] log likelihood: -443057.022099
EM: Round [112] log likelihood: -443057.020814
EM: Round [113] log likelihood: -443057.019568
EM: Round [114] log likelihood: -443057.018359
EM: Round [115] log likelihood: -443057.017185
EM: Round [116] log likelihood: -443057.016046
EM: Round [117] log likelihood: -443057.014939
EM: Round [118] log likelihood: -443057.013864
EM: Round [119] log likelihood: -443057.012820
EM: Round [120] log likelihood: -443057.011806
EM: Round [121] log likelihood: -443057.010819
EM: Round [122] log likelihood: -443057.009860
EM: Round [123] log likelihood: -443057.008928
EM: Round [124] log likelihood: -443057.008021
EM: Round [125] log likelihood: -443057.007138
EM: Round [126] log likelihood: -443057.006280
EM: Round [127] log likelihood: -443057.005444
EM: Round [128] log likelihood: -443057.004630
EM: Round [129] log likelihood: -443057.003838
EM: Round [130] log likelihood: -443057.003067
EM: Round [131] log likelihood: -443057.002315
EM: Round [132] log likelihood: -443057.001583
EM: Round [133] log likelihood: -443057.000870
EM: Round [134] log likelihood: -443057.000174
EM: Round [135] log likelihood: -443056.999496
EM: Round [136] log likelihood: -443056.998836
EM: Round [137] log likelihood: -443056.998191
EM: Round [138] log likelihood: -443056.997563
EM: Round [139] log likelihood: -443056.996950
EM: Round [140] log likelihood: -443056.996352
EM: Round [141] log likelihood: -443056.995768
EM: Round [142] log likelihood: -443056.995199
EM: Round [143] log likelihood: -443056.994643
EM: Round [144] log likelihood: -443056.994100
EM: Round [145] log likelihood: -443056.993571
EM: Round [146] log likelihood: -443056.993053
EM: Round [147] log likelihood: -443056.992548
EM: Round [148] log likelihood: -443056.992055
EM: Round [149] log likelihood: -443056.991573
EM: Round [150] log likelihood: -443056.991102
EM: Round [151] log likelihood: -443056.990641
EM: Round [152] log likelihood: -443056.990192
EM: Round [153] log likelihood: -443056.989752
EM: Round [154] log likelihood: -443056.989322
EM: Round [155] log likelihood: -443056.988902
EM: Round [156] log likelihood: -443056.988492
EM: Round [157] log likelihood: -443056.988090
EM: Round [158] log likelihood: -443056.987697
EM: Round [159] log likelihood: -443056.987313
EM: Round [160] log likelihood: -443056.986937
EM: Round [161] log likelihood: -443056.986569
EM: Round [162] log likelihood: -443056.986210
EM: Round [163] log likelihood: -443056.985857
EM: Round [164] log likelihood: -443056.985513
EM: Round [165] log likelihood: -443056.985176
EM: Round [166] log likelihood: -443056.984846
EM: Round [167] log likelihood: -443056.984522
EM: Round [168] log likelihood: -443056.984206
EM: Round [169] log likelihood: -443056.983896
EM: Round [170] log likelihood: -443056.983593
EM: Round [171] log likelihood: -443056.983295
EM: Round [172] log likelihood: -443056.983004
EM: Round [173] log likelihood: -443056.982719
EM: Round [174] log likelihood: -443056.982440
EM: Round [175] log likelihood: -443056.982166
EM: Round [176] log likelihood: -443056.981898
EM: Round [177] log likelihood: -443056.981635
EM: Round [178] log likelihood: -443056.981378
EM: Round [179] log likelihood: -443056.981125
EM: Round [180] log likelihood: -443056.980878
EM: Round [181] log likelihood: -443056.980635
EM: Round [182] log likelihood: -443056.980397
EM: Round [183] log likelihood: -443056.980164
EM: Round [184] log likelihood: -443056.979936
EM: Round [185] log likelihood: -443056.979711
EM: Round [186] log likelihood: -443056.979491
EM: Round [187] log likelihood: -443056.979276
EM: Round [188] log likelihood: -443056.979064
EM: Round [189] log likelihood: -443056.978856
EM: Round [190] log likelihood: -443056.978653
EM: Round [191] log likelihood: -443056.978453
EM: Round [192] log likelihood: -443056.978257
EM: Round [193] log likelihood: -443056.978065
EM: Round [194] log likelihood: -443056.977876
EM: Round [195] log likelihood: -443056.977690
EM: Round [196] log likelihood: -443056.977508
EM: Round [197] log likelihood: -443056.977330
EM: Round [198] log likelihood: -443056.977155
EM: Round [199] log likelihood: -443056.976982
EM: Round [200] log likelihood: -443056.976813
EM: Round [201] log likelihood: -443056.976647
EM: Round [202] log likelihood: -443056.976484
EM: Round [203] log likelihood: -443056.976324
EM: Round [204] log likelihood: -443056.976167
EM: Round [205] log likelihood: -443056.976013
EM: Round [206] log likelihood: -443056.975861
EM: Round [207] log likelihood: -443056.975712
EM: Round [208] log likelihood: -443056.975566
EM: Round [209] log likelihood: -443056.975422
EM: Round [210] log likelihood: -443056.975281
EM: Round [211] log likelihood: -443056.975142
EM: Round [212] log likelihood: -443056.975005
EM: Round [213] log likelihood: -443056.974871
EM: Round [214] log likelihood: -443056.974739
EM: Round [215] log likelihood: -443056.974610
EM: Round [216] log likelihood: -443056.974482
EM: Round [217] log likelihood: -443056.974357
EM: Round [218] log likelihood: -443056.974234
EM: Round [219] log likelihood: -443056.974113
EM: Round [220] log likelihood: -443056.973994
EM: Round [221] log likelihood: -443056.973877
EM: Round [222] log likelihood: -443056.973761
EM: Round [223] log likelihood: -443056.973648
EM: Round [224] log likelihood: -443056.973537
EM: Round [225] log likelihood: -443056.973427
EM: Round [226] log likelihood: -443056.973320
EM: Round [227] log likelihood: -443056.973213
EM: Round [228] log likelihood: -443056.973109
EM: Round [229] log likelihood: -443056.973007
EM: Round [230] log likelihood: -443056.972906
EM: Round [231] log likelihood: -443056.972806
EM: Stopping iterations at round 231 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -443640.055169
EM: Round [1] log likelihood: -442843.760197
EM: Round [2] log likelihood: -442588.535999
EM: Round [3] log likelihood: -442475.553823
EM: Round [4] log likelihood: -442417.544068
EM: Round [5] log likelihood: -442385.325672
EM: Round [6] log likelihood: -442366.407272
EM: Round [7] log likelihood: -442354.737213
EM: Round [8] log likelihood: -442347.198164
EM: Round [9] log likelihood: -442342.116629
EM: Round [10] log likelihood: -442338.559382
EM: Round [11] log likelihood: -442335.985730
EM: Round [12] log likelihood: -442334.070319
EM: Round [13] log likelihood: -442332.610096
EM: Round [14] log likelihood: -442331.473906
EM: Round [15] log likelihood: -442330.574308
EM: Round [16] log likelihood: -442329.851299
EM: Round [17] log likelihood: -442329.262631
EM: Round [18] log likelihood: -442328.777873
EM: Round [19] log likelihood: -442328.374659
EM: Round [20] log likelihood: -442328.036256
EM: Round [21] log likelihood: -442327.749954
EM: Round [22] log likelihood: -442327.505959
EM: Round [23] log likelihood: -442327.296636
EM: Round [24] log likelihood: -442327.115961
EM: Round [25] log likelihood: -442326.959139
EM: Round [26] log likelihood: -442326.822313
EM: Round [27] log likelihood: -442326.702358
EM: Round [28] log likelihood: -442326.596721
EM: Round [29] log likelihood: -442326.503302
EM: Round [30] log likelihood: -442326.420361
EM: Round [31] log likelihood: -442326.346449
EM: Round [32] log likelihood: -442326.280352
EM: Round [33] log likelihood: -442326.221047
EM: Round [34] log likelihood: -442326.167668
EM: Round [35] log likelihood: -442326.119478
EM: Round [36] log likelihood: -442326.075848
EM: Round [37] log likelihood: -442326.036239
EM: Round [38] log likelihood: -442326.000186
EM: Round [39] log likelihood: -442325.967287
EM: Round [40] log likelihood: -442325.937195
EM: Round [41] log likelihood: -442325.909606
EM: Round [42] log likelihood: -442325.884256
EM: Round [43] log likelihood: -442325.860913
EM: Round [44] log likelihood: -442325.839375
EM: Round [45] log likelihood: -442325.819462
EM: Round [46] log likelihood: -442325.801016
EM: Round [47] log likelihood: -442325.783899
EM: Round [48] log likelihood: -442325.767986
EM: Round [49] log likelihood: -442325.753167
EM: Round [50] log likelihood: -442325.739344
EM: Round [51] log likelihood: -442325.726430
EM: Round [52] log likelihood: -442325.714347
EM: Round [53] log likelihood: -442325.703023
EM: Round [54] log likelihood: -442325.692396
EM: Round [55] log likelihood: -442325.682410
EM: Round [56] log likelihood: -442325.673013
EM: Round [57] log likelihood: -442325.664159
EM: Round [58] log likelihood: -442325.655806
EM: Round [59] log likelihood: -442325.647917
EM: Round [60] log likelihood: -442325.640456
EM: Round [61] log likelihood: -442325.633393
EM: Round [62] log likelihood: -442325.626700
EM: Round [63] log likelihood: -442325.620349
EM: Round [64] log likelihood: -442325.614319
EM: Round [65] log likelihood: -442325.608586
EM: Round [66] log likelihood: -442325.603131
EM: Round [67] log likelihood: -442325.597936
EM: Round [68] log likelihood: -442325.592985
EM: Round [69] log likelihood: -442325.588261
EM: Round [70] log likelihood: -442325.583751
EM: Round [71] log likelihood: -442325.579441
EM: Round [72] log likelihood: -442325.575319
EM: Round [73] log likelihood: -442325.571376
EM: Round [74] log likelihood: -442325.567599
EM: Round [75] log likelihood: -442325.563979
EM: Round [76] log likelihood: -442325.560508
EM: Round [77] log likelihood: -442325.557178
EM: Round [78] log likelihood: -442325.553980
EM: Round [79] log likelihood: -442325.550908
EM: Round [80] log likelihood: -442325.547954
EM: Round [81] log likelihood: -442325.545114
EM: Round [82] log likelihood: -442325.542380
EM: Round [83] log likelihood: -442325.539748
EM: Round [84] log likelihood: -442325.537213
EM: Round [85] log likelihood: -442325.534770
EM: Round [86] log likelihood: -442325.532413
EM: Round [87] log likelihood: -442325.530140
EM: Round [88] log likelihood: -442325.527947
EM: Round [89] log likelihood: -442325.525829
EM: Round [90] log likelihood: -442325.523783
EM: Round [91] log likelihood: -442325.521806
EM: Round [92] log likelihood: -442325.519895
EM: Round [93] log likelihood: -442325.518047
EM: Round [94] log likelihood: -442325.516260
EM: Round [95] log likelihood: -442325.514530
EM: Round [96] log likelihood: -442325.512855
EM: Round [97] log likelihood: -442325.511233
EM: Round [98] log likelihood: -442325.509662
EM: Round [99] log likelihood: -442325.508140
EM: Round [100] log likelihood: -442325.506665
EM: Round [101] log likelihood: -442325.505234
EM: Round [102] log likelihood: -442325.503847
EM: Round [103] log likelihood: -442325.502501
EM: Round [104] log likelihood: -442325.501196
EM: Round [105] log likelihood: -442325.499928
EM: Round [106] log likelihood: -442325.498697
EM: Round [107] log likelihood: -442325.497503
EM: Round [108] log likelihood: -442325.496342
EM: Round [109] log likelihood: -442325.495214
EM: Round [110] log likelihood: -442325.494118
EM: Round [111] log likelihood: -442325.493053
EM: Round [112] log likelihood: -442325.492018
EM: Round [113] log likelihood: -442325.491011
EM: Round [114] log likelihood: -442325.490032
EM: Round [115] log likelihood: -442325.489079
EM: Round [116] log likelihood: -442325.488152
EM: Round [117] log likelihood: -442325.487250
EM: Round [118] log likelihood: -442325.486372
EM: Round [119] log likelihood: -442325.485517
EM: Round [120] log likelihood: -442325.484685
EM: Round [121] log likelihood: -442325.483874
EM: Round [122] log likelihood: -442325.483085
EM: Round [123] log likelihood: -442325.482316
EM: Round [124] log likelihood: -442325.481567
EM: Round [125] log likelihood: -442325.480836
EM: Round [126] log likelihood: -442325.480125
EM: Round [127] log likelihood: -442325.479431
EM: Round [128] log likelihood: -442325.478755
EM: Round [129] log likelihood: -442325.478095
EM: Round [130] log likelihood: -442325.477452
EM: Round [131] log likelihood: -442325.476825
EM: Round [132] log likelihood: -442325.476213
EM: Round [133] log likelihood: -442325.475616
EM: Round [134] log likelihood: -442325.475033
EM: Round [135] log likelihood: -442325.474464
EM: Round [136] log likelihood: -442325.473910
EM: Round [137] log likelihood: -442325.473368
EM: Round [138] log likelihood: -442325.472839
EM: Round [139] log likelihood: -442325.472323
EM: Round [140] log likelihood: -442325.471819
EM: Round [141] log likelihood: -442325.471326
EM: Round [142] log likelihood: -442325.470845
EM: Round [143] log likelihood: -442325.470375
EM: Round [144] log likelihood: -442325.469916
EM: Round [145] log likelihood: -442325.469468
EM: Round [146] log likelihood: -442325.469030
EM: Round [147] log likelihood: -442325.468602
EM: Round [148] log likelihood: -442325.468183
EM: Round [149] log likelihood: -442325.467774
EM: Round [150] log likelihood: -442325.467374
EM: Round [151] log likelihood: -442325.466983
EM: Round [152] log likelihood: -442325.466600
EM: Round [153] log likelihood: -442325.466226
EM: Round [154] log likelihood: -442325.465861
EM: Round [155] log likelihood: -442325.465503
EM: Round [156] log likelihood: -442325.465153
EM: Round [157] log likelihood: -442325.464811
EM: Round [158] log likelihood: -442325.464476
EM: Round [159] log likelihood: -442325.464148
EM: Round [160] log likelihood: -442325.463827
EM: Round [161] log likelihood: -442325.463513
EM: Round [162] log likelihood: -442325.463206
EM: Round [163] log likelihood: -442325.462905
EM: Round [164] log likelihood: -442325.462611
EM: Round [165] log likelihood: -442325.462323
EM: Round [166] log likelihood: -442325.462041
EM: Round [167] log likelihood: -442325.461764
EM: Round [168] log likelihood: -442325.461494
EM: Round [169] log likelihood: -442325.461229
EM: Round [170] log likelihood: -442325.460969
EM: Round [171] log likelihood: -442325.460715
EM: Round [172] log likelihood: -442325.460466
EM: Round [173] log likelihood: -442325.460222
EM: Round [174] log likelihood: -442325.459983
EM: Round [175] log likelihood: -442325.459748
EM: Round [176] log likelihood: -442325.459519
EM: Round [177] log likelihood: -442325.459294
EM: Round [178] log likelihood: -442325.459073
EM: Round [179] log likelihood: -442325.458857
EM: Round [180] log likelihood: -442325.458645
EM: Round [181] log likelihood: -442325.458438
EM: Round [182] log likelihood: -442325.458234
EM: Round [183] log likelihood: -442325.458034
EM: Round [184] log likelihood: -442325.457838
EM: Round [185] log likelihood: -442325.457646
EM: Round [186] log likelihood: -442325.457458
EM: Round [187] log likelihood: -442325.457273
EM: Round [188] log likelihood: -442325.457092
EM: Round [189] log likelihood: -442325.456914
EM: Round [190] log likelihood: -442325.456740
EM: Round [191] log likelihood: -442325.456569
EM: Round [192] log likelihood: -442325.456401
EM: Round [193] log likelihood: -442325.456236
EM: Round [194] log likelihood: -442325.456074
EM: Round [195] log likelihood: -442325.455916
EM: Round [196] log likelihood: -442325.455760
EM: Round [197] log likelihood: -442325.455607
EM: Round [198] log likelihood: -442325.455457
EM: Round [199] log likelihood: -442325.455309
EM: Round [200] log likelihood: -442325.455165
EM: Round [201] log likelihood: -442325.455023
EM: Round [202] log likelihood: -442325.454883
EM: Round [203] log likelihood: -442325.454746
EM: Round [204] log likelihood: -442325.454612
EM: Round [205] log likelihood: -442325.454480
EM: Round [206] log likelihood: -442325.454350
EM: Round [207] log likelihood: -442325.454222
EM: Round [208] log likelihood: -442325.454097
EM: Round [209] log likelihood: -442325.453974
EM: Round [210] log likelihood: -442325.453853
EM: Round [211] log likelihood: -442325.453734
EM: Round [212] log likelihood: -442325.453618
EM: Round [213] log likelihood: -442325.453503
EM: Round [214] log likelihood: -442325.453390
EM: Round [215] log likelihood: -442325.453280
EM: Round [216] log likelihood: -442325.453171
EM: Round [217] log likelihood: -442325.453064
EM: Round [218] log likelihood: -442325.452958
EM: Round [219] log likelihood: -442325.452855
EM: Round [220] log likelihood: -442325.452753
EM: Round [221] log likelihood: -442325.452653
EM: Round [222] log likelihood: -442325.452555
EM: Stopping iterations at round 222 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.DjfA2JGmdp/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.DjfA2JGmdp/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.DjfA2JGmdp/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 147944603 > /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.DjfA2JGmdp/ctat_genome_lib_build_dir > /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.DjfA2JGmdp/ctat_genome_lib_build_dir --annotate /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.DjfA2JGmdp/ctat_genome_lib_build_dir
-done, see /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.DjfA2JGmdp/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 1152, filtered: 10628)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.DjfA2JGmdp/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.DjfA2JGmdp/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000220685.3]
WARNING, no entry stored in dbm for [ENSG00000261499.2]
WARNING, no entry stored in dbm for [ENSG00000231528.3]
WARNING, no entry stored in dbm for [ENSG00000186543.7]
WARNING, no entry stored in dbm for [ENSG00000264546.1]
WARNING, no entry stored in dbm for [ENSG00000227681.5]
WARNING, no entry stored in dbm for [ENSG00000267196.1]
WARNING, no entry stored in dbm for [ENSG00000230510.7]
WARNING, no entry stored in dbm for [ENSG00000214975.4]
WARNING, no entry stored in dbm for [ENSG00000239440.6]
WARNING, no entry stored in dbm for [ENSG00000248205.1]
WARNING, no entry stored in dbm for [ENSG00000234709.2]
WARNING, no entry stored in dbm for [ENSG00000185485.14]
WARNING, no entry stored in dbm for [ENSG00000257884.2]
WARNING, no entry stored in dbm for [ENSG00000260236.1]
WARNING, no entry stored in dbm for [ENSG00000260236.1]
WARNING, no entry stored in dbm for [ENSG00000253107.1]
WARNING, no entry stored in dbm for [ENSG00000204055.5]
WARNING, no entry stored in dbm for [ENSG00000253107.1]
WARNING, no entry stored in dbm for [ENSG00000204055.5]
WARNING, no entry stored in dbm for [ENSG00000253107.1]
WARNING, no entry stored in dbm for [ENSG00000204055.5]
WARNING, no entry stored in dbm for [ENSG00000271709.1]
WARNING, no entry stored in dbm for [ENSG00000205763.13]
WARNING, no entry stored in dbm for [ENSG00000184624.4]
WARNING, no entry stored in dbm for [ENSG00000272734.1]
WARNING, no entry stored in dbm for [ENSG00000225172.6]
WARNING, no entry stored in dbm for [ENSG00000260010.1]
WARNING, no entry stored in dbm for [ENSG00000264462.1]
WARNING, no entry stored in dbm for [ENSG00000132204.14]
WARNING, no entry stored in dbm for [ENSG00000197332.9]
WARNING, no entry stored in dbm for [ENSG00000253559.1]
WARNING, no entry stored in dbm for [ENSG00000286063.1]
WARNING, no entry stored in dbm for [ENSG00000250802.7]
WARNING, no entry stored in dbm for [ENSG00000236829.9]
WARNING, no entry stored in dbm for [ENSG00000212939.2]
WARNING, no entry stored in dbm for [ENSG00000227598.1]
WARNING, no entry stored in dbm for [ENSG00000231307.1]
WARNING, no entry stored in dbm for [ENSG00000228242.6]
WARNING, no entry stored in dbm for [ENSG00000283674.3]
WARNING, no entry stored in dbm for [ENSG00000231156.1]
WARNING, no entry stored in dbm for [ENSG00000259979.1]
WARNING, no entry stored in dbm for [ENSG00000229036.7]
WARNING, no entry stored in dbm for [ENSG00000226360.5]
WARNING, no entry stored in dbm for [ENSG00000223650.1]
WARNING, no entry stored in dbm for [ENSG00000232000.3]
WARNING, no entry stored in dbm for [ENSG00000258406.1]
WARNING, no entry stored in dbm for [ENSG00000235217.6]
WARNING, no entry stored in dbm for [ENSG00000279861.1]
WARNING, no entry stored in dbm for [ENSG00000287705.1]
WARNING, no entry stored in dbm for [ENSG00000197308.9]
WARNING, no entry stored in dbm for [ENSG00000227372.12]
WARNING, no entry stored in dbm for [ENSG00000237159.6]
WARNING, no entry stored in dbm for [ENSG00000283269.1]
WARNING, no entry stored in dbm for [ENSG00000233133.1]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000285981.1]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000241163.8]
WARNING, no entry stored in dbm for [ENSG00000224966.4]
WARNING, no entry stored in dbm for [ENSG00000128438.10]
WARNING, no entry stored in dbm for [ENSG00000262049.1]
WARNING, no entry stored in dbm for [ENSG00000273420.1]
WARNING, no entry stored in dbm for [ENSG00000235512.1]
WARNING, no entry stored in dbm for [ENSG00000234106.3]
WARNING, no entry stored in dbm for [ENSG00000237401.8]
WARNING, no entry stored in dbm for [ENSG00000207008.1]
WARNING, no entry stored in dbm for [ENSG00000251676.2]
WARNING, no entry stored in dbm for [ENSG00000205534.6]
WARNING, no entry stored in dbm for [ENSG00000283426.1]
WARNING, no entry stored in dbm for [ENSG00000285051.2]
WARNING, no entry stored in dbm for [ENSG00000224081.9]
WARNING, no entry stored in dbm for [ENSG00000230423.3]
WARNING, no entry stored in dbm for [ENSG00000228051.1]
WARNING, no entry stored in dbm for [ENSG00000256969.2]
WARNING, no entry stored in dbm for [ENSG00000227681.5]
WARNING, no entry stored in dbm for [ENSG00000231915.2]
WARNING, no entry stored in dbm for [ENSG00000172965.17]
WARNING, no entry stored in dbm for [ENSG00000270954.1]
WARNING, no entry stored in dbm for [ENSG00000224439.2]
WARNING, no entry stored in dbm for [ENSG00000242607.1]
WARNING, no entry stored in dbm for [ENSG00000200131.1]
WARNING, no entry stored in dbm for [ENSG00000201010.1]
WARNING, no entry stored in dbm for [ENSG00000213216.2]
WARNING, no entry stored in dbm for [ENSG00000214765.8]
WARNING, no entry stored in dbm for [ENSG00000220583.1]
WARNING, no entry stored in dbm for [ENSG00000244270.1]
WARNING, no entry stored in dbm for [ENSG00000243730.2]
WARNING, no entry stored in dbm for [ENSG00000243744.2]
WARNING, no entry stored in dbm for [ENSG00000230559.1]
WARNING, no entry stored in dbm for [ENSG00000242423.2]
WARNING, no entry stored in dbm for [ENSG00000178464.6]
WARNING, no entry stored in dbm for [ENSG00000206888.1]
WARNING, no entry stored in dbm for [ENSG00000206975.1]
WARNING, no entry stored in dbm for [ENSG00000239888.3]
WARNING, no entry stored in dbm for [ENSG00000286061.1]
WARNING, no entry stored in dbm for [ENSG00000236741.4]
WARNING, no entry stored in dbm for [ENSG00000248674.1]
WARNING, no entry stored in dbm for [ENSG00000229502.5]
WARNING, no entry stored in dbm for [ENSG00000231760.5]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000264775.1]
WARNING, no entry stored in dbm for [ENSG00000254332.1]
WARNING, no entry stored in dbm for [ENSG00000273125.2]
WARNING, no entry stored in dbm for [ENSG00000250928.1]
WARNING, no entry stored in dbm for [ENSG00000272655.2]
WARNING, no entry stored in dbm for [ENSG00000280003.1]
WARNING, no entry stored in dbm for [ENSG00000227893.1]
WARNING, no entry stored in dbm for [ENSG00000286027.1]
WARNING, no entry stored in dbm for [ENSG00000281880.2]
WARNING, no entry stored in dbm for [ENSG00000266921.2]
WARNING, no entry stored in dbm for [ENSG00000233997.5]
WARNING, no entry stored in dbm for [ENSG00000200972.1]
WARNING, no entry stored in dbm for [ENSG00000254948.1]
WARNING, no entry stored in dbm for [ENSG00000225756.1]
WARNING, no entry stored in dbm for [ENSG00000232794.1]
WARNING, no entry stored in dbm for [ENSG00000229236.3]
WARNING, no entry stored in dbm for [ENSG00000106133.18]
WARNING, no entry stored in dbm for [ENSG00000253704.2]
WARNING, no entry stored in dbm for [ENSG00000223705.9]
WARNING, no entry stored in dbm for [ENSG00000223705.9]
WARNING, no entry stored in dbm for [ENSG00000270240.2]
WARNING, no entry stored in dbm for [ENSG00000254017.1]
WARNING, no entry stored in dbm for [ENSG00000265788.2]
WARNING, no entry stored in dbm for [ENSG00000176593.8]
WARNING, no entry stored in dbm for [ENSG00000176593.8]
WARNING, no entry stored in dbm for [ENSG00000259319.1]
WARNING, no entry stored in dbm for [ENSG00000248740.6]
WARNING, no entry stored in dbm for [ENSG00000200972.1]
WARNING, no entry stored in dbm for [ENSG00000267072.2]
WARNING, no entry stored in dbm for [ENSG00000236051.7]
WARNING, no entry stored in dbm for [ENSG00000236827.1]
WARNING, no entry stored in dbm for [ENSG00000235531.11]
WARNING, no entry stored in dbm for [ENSG00000262454.4]
WARNING, no entry stored in dbm for [ENSG00000269604.1]
WARNING, no entry stored in dbm for [ENSG00000249898.8]
WARNING, no entry stored in dbm for [ENSG00000227284.2]
WARNING, no entry stored in dbm for [ENSG00000213362.3]
WARNING, no entry stored in dbm for [ENSG00000237797.1]
WARNING, no entry stored in dbm for [ENSG00000170919.16]
WARNING, no entry stored in dbm for [ENSG00000259407.1]
WARNING, no entry stored in dbm for [ENSG00000214425.8]
WARNING, no entry stored in dbm for [ENSG00000271013.1]
WARNING, no entry stored in dbm for [ENSG00000225166.2]
WARNING, no entry stored in dbm for [ENSG00000230269.7]
WARNING, no entry stored in dbm for [ENSG00000261231.6]
WARNING, no entry stored in dbm for [ENSG00000238212.3]
WARNING, no entry stored in dbm for [ENSG00000228065.11]
WARNING, no entry stored in dbm for [ENSG00000237491.10]
WARNING, no entry stored in dbm for [ENSG00000231605.6]
WARNING, no entry stored in dbm for [ENSG00000228918.4]
WARNING, no entry stored in dbm for [ENSG00000231532.6]
WARNING, no entry stored in dbm for [ENSG00000281404.2]
WARNING, no entry stored in dbm for [ENSG00000224286.6]
WARNING, no entry stored in dbm for [ENSG00000282508.2]
WARNING, no entry stored in dbm for [ENSG00000251381.8]
WARNING, no entry stored in dbm for [ENSG00000213650.3]
WARNING, no entry stored in dbm for [ENSG00000223685.6]
WARNING, no entry stored in dbm for [ENSG00000276758.1]
WARNING, no entry stored in dbm for [ENSG00000179818.14]
WARNING, no entry stored in dbm for [ENSG00000224968.2]
WARNING, no entry stored in dbm for [ENSG00000232871.8]
WARNING, no entry stored in dbm for [ENSG00000233652.1]
WARNING, no entry stored in dbm for [ENSG00000228817.4]
WARNING, no entry stored in dbm for [ENSG00000170919.16]
WARNING, no entry stored in dbm for [ENSG00000254034.2]
WARNING, no entry stored in dbm for [ENSG00000205018.2]
WARNING, no entry stored in dbm for [ENSG00000257501.6]
WARNING, no entry stored in dbm for [ENSG00000206159.11]
WARNING, no entry stored in dbm for [ENSG00000225024.1]
WARNING, no entry stored in dbm for [ENSG00000228033.6]
WARNING, no entry stored in dbm for [ENSG00000285219.2]
WARNING, no entry stored in dbm for [ENSG00000254859.1]
WARNING, no entry stored in dbm for [ENSG00000256654.4]
WARNING, no entry stored in dbm for [ENSG00000288062.1]
WARNING, no entry stored in dbm for [ENSG00000281344.1]
WARNING, no entry stored in dbm for [ENSG00000278621.1]
WARNING, no entry stored in dbm for [ENSG00000257287.1]
WARNING, no entry stored in dbm for [ENSG00000178458.5]
WARNING, no entry stored in dbm for [ENSG00000181201.3]
WARNING, no entry stored in dbm for [ENSG00000261716.2]
WARNING, no entry stored in dbm for [ENSG00000220323.4]
WARNING, no entry stored in dbm for [ENSG00000281896.1]
WARNING, no entry stored in dbm for [ENSG00000226777.7]
WARNING, no entry stored in dbm for [ENSG00000226900.2]
WARNING, no entry stored in dbm for [ENSG00000222041.11]
WARNING, no entry stored in dbm for [ENSG00000272396.1]
WARNING, no entry stored in dbm for [ENSG00000183535.9]
WARNING, no entry stored in dbm for [ENSG00000234741.8]
WARNING, no entry stored in dbm for [ENSG00000287570.1]
WARNING, no entry stored in dbm for [ENSG00000278144.1]
WARNING, no entry stored in dbm for [ENSG00000228876.4]
WARNING, no entry stored in dbm for [ENSG00000205763.13]
WARNING, no entry stored in dbm for [ENSG00000229835.2]
WARNING, no entry stored in dbm for [ENSG00000182057.5]
WARNING, no entry stored in dbm for [ENSG00000279091.1]
WARNING, no entry stored in dbm for [ENSG00000235652.9]
WARNING, no entry stored in dbm for [ENSG00000237840.6]
WARNING, no entry stored in dbm for [ENSG00000249353.2]
WARNING, no entry stored in dbm for [ENSG00000248539.1]
WARNING, no entry stored in dbm for [ENSG00000239467.6]
WARNING, no entry stored in dbm for [ENSG00000251504.1]
WARNING, no entry stored in dbm for [ENSG00000204623.9]
WARNING, no entry stored in dbm for [ENSG00000186704.9]
WARNING, no entry stored in dbm for [ENSG00000229358.3]
WARNING, no entry stored in dbm for [ENSG00000227540.1]
WARNING, no entry stored in dbm for [ENSG00000280109.3]
WARNING, no entry stored in dbm for [ENSG00000254275.6]
WARNING, no entry stored in dbm for [ENSG00000199883.1]
WARNING, no entry stored in dbm for [ENSG00000200243.1]
WARNING, no entry stored in dbm for [ENSG00000202512.1]
WARNING, no entry stored in dbm for [ENSG00000233514.1]
WARNING, no entry stored in dbm for [ENSG00000231890.8]
WARNING, no entry stored in dbm for [ENSG00000255856.2]
WARNING, no entry stored in dbm for [ENSG00000236830.7]
WARNING, no entry stored in dbm for [ENSG00000276077.4]
WARNING, no entry stored in dbm for [ENSG00000232794.1]
WARNING, no entry stored in dbm for [ENSG00000263684.2]
WARNING, no entry stored in dbm for [ENSG00000168405.17]
WARNING, no entry stored in dbm for [ENSG00000260996.1]
WARNING, no entry stored in dbm for [ENSG00000224287.2]
WARNING, no entry stored in dbm for [ENSG00000271064.1]
WARNING, no entry stored in dbm for [ENSG00000231880.2]
WARNING, no entry stored in dbm for [ENSG00000254496.1]
WARNING, no entry stored in dbm for [ENSG00000285413.1]
WARNING, no entry stored in dbm for [ENSG00000254532.2]
WARNING, no entry stored in dbm for [ENSG00000231312.7]
WARNING, no entry stored in dbm for [ENSG00000178722.13]
WARNING, no entry stored in dbm for [ENSG00000235488.1]
WARNING, no entry stored in dbm for [ENSG00000266998.1]
WARNING, no entry stored in dbm for [ENSG00000273143.2]
WARNING, no entry stored in dbm for [ENSG00000205333.5]
WARNING, no entry stored in dbm for [ENSG00000260776.6]
WARNING, no entry stored in dbm for [ENSG00000237850.7]
WARNING, no entry stored in dbm for [ENSG00000237850.7]
WARNING, no entry stored in dbm for [ENSG00000237850.7]
WARNING, no entry stored in dbm for [ENSG00000237850.7]
WARNING, no entry stored in dbm for [ENSG00000242338.6]
WARNING, no entry stored in dbm for [ENSG00000243289.1]
WARNING, no entry stored in dbm for [ENSG00000271459.1]
WARNING, no entry stored in dbm for [ENSG00000224282.3]
WARNING, no entry stored in dbm for [ENSG00000285094.1]
WARNING, no entry stored in dbm for [ENSG00000215409.4]
WARNING, no entry stored in dbm for [ENSG00000204959.4]
WARNING, no entry stored in dbm for [ENSG00000286694.1]
WARNING, no entry stored in dbm for [ENSG00000275185.1]
WARNING, no entry stored in dbm for [ENSG00000267339.7]
WARNING, no entry stored in dbm for [ENSG00000239249.3]
WARNING, no entry stored in dbm for [ENSG00000259953.2]
WARNING, no entry stored in dbm for [ENSG00000256591.5]
WARNING, no entry stored in dbm for [ENSG00000243095.1]
WARNING, no entry stored in dbm for [ENSG00000259516.2]
WARNING, no entry stored in dbm for [ENSG00000255856.2]
WARNING, no entry stored in dbm for [ENSG00000266402.3]
WARNING, no entry stored in dbm for [ENSG00000237636.3]
WARNING, no entry stored in dbm for [ENSG00000266931.2]
WARNING, no entry stored in dbm for [ENSG00000235085.3]
WARNING, no entry stored in dbm for [ENSG00000217315.1]
WARNING, no entry stored in dbm for [ENSG00000234042.1]
WARNING, no entry stored in dbm for [ENSG00000273558.1]
WARNING, no entry stored in dbm for [ENSG00000225096.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000287427.1]
WARNING, no entry stored in dbm for [ENSG00000235582.2]
WARNING, no entry stored in dbm for [ENSG00000215016.2]
WARNING, no entry stored in dbm for [ENSG00000271551.2]
WARNING, no entry stored in dbm for [ENSG00000139239.7]
WARNING, no entry stored in dbm for [ENSG00000257307.1]
WARNING, no entry stored in dbm for [ENSG00000204055.5]
WARNING, no entry stored in dbm for [ENSG00000285257.1]
WARNING, no entry stored in dbm for [ENSG00000197670.6]
WARNING, no entry stored in dbm for [ENSG00000232406.7]
WARNING, no entry stored in dbm for [ENSG00000232848.1]
WARNING, no entry stored in dbm for [ENSG00000213312.3]
WARNING, no entry stored in dbm for [ENSG00000248692.5]
WARNING, no entry stored in dbm for [ENSG00000279047.4]
WARNING, no entry stored in dbm for [ENSG00000251417.2]
WARNING, no entry stored in dbm for [ENSG00000278385.1]
WARNING, no entry stored in dbm for [ENSG00000288022.1]
WARNING, no entry stored in dbm for [ENSG00000278791.1]
WARNING, no entry stored in dbm for [ENSG00000274425.1]
WARNING, no entry stored in dbm for [ENSG00000230571.2]
WARNING, no entry stored in dbm for [ENSG00000213956.4]
WARNING, no entry stored in dbm for [ENSG00000258116.1]
WARNING, no entry stored in dbm for [ENSG00000259692.6]
WARNING, no entry stored in dbm for [ENSG00000273230.1]
WARNING, no entry stored in dbm for [ENSG00000251378.1]
WARNING, no entry stored in dbm for [ENSG00000228999.4]
WARNING, no entry stored in dbm for [ENSG00000266931.2]
WARNING, no entry stored in dbm for [ENSG00000228998.4]
WARNING, no entry stored in dbm for [ENSG00000269951.1]
WARNING, no entry stored in dbm for [ENSG00000255281.1]
WARNING, no entry stored in dbm for [ENSG00000213144.2]
WARNING, no entry stored in dbm for [ENSG00000255182.2]
WARNING, no entry stored in dbm for [ENSG00000240207.7]
WARNING, no entry stored in dbm for [ENSG00000270488.1]
WARNING, no entry stored in dbm for [ENSG00000288663.1]
WARNING, no entry stored in dbm for [ENSG00000254559.1]
WARNING, no entry stored in dbm for [ENSG00000257337.7]
WARNING, no entry stored in dbm for [ENSG00000268652.1]
WARNING, no entry stored in dbm for [ENSG00000260784.1]
WARNING, no entry stored in dbm for [ENSG00000257342.1]
WARNING, no entry stored in dbm for [ENSG00000244313.3]
WARNING, no entry stored in dbm for [ENSG00000285600.1]
WARNING, no entry stored in dbm for [ENSG00000264920.2]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000231421.8]
WARNING, no entry stored in dbm for [ENSG00000257453.1]
WARNING, no entry stored in dbm for [ENSG00000258017.2]
WARNING, no entry stored in dbm for [ENSG00000274892.1]
WARNING, no entry stored in dbm for [ENSG00000287593.1]
WARNING, no entry stored in dbm for [ENSG00000249839.1]
WARNING, no entry stored in dbm for [ENSG00000271443.1]
WARNING, no entry stored in dbm for [ENSG00000216895.9]
WARNING, no entry stored in dbm for [ENSG00000214331.8]
WARNING, no entry stored in dbm for [ENSG00000236804.1]
WARNING, no entry stored in dbm for [ENSG00000176593.8]
WARNING, no entry stored in dbm for [ENSG00000267727.1]
WARNING, no entry stored in dbm for [ENSG00000267727.1]
WARNING, no entry stored in dbm for [ENSG00000224415.1]
WARNING, no entry stored in dbm for [ENSG00000244538.1]
WARNING, no entry stored in dbm for [ENSG00000229180.7]
WARNING, no entry stored in dbm for [ENSG00000226040.3]
WARNING, no entry stored in dbm for [ENSG00000224280.1]
WARNING, no entry stored in dbm for [ENSG00000224134.1]
WARNING, no entry stored in dbm for [ENSG00000232794.1]
WARNING, no entry stored in dbm for [ENSG00000277283.1]
WARNING, no entry stored in dbm for [ENSG00000274177.1]
WARNING, no entry stored in dbm for [ENSG00000225774.2]
WARNING, no entry stored in dbm for [ENSG00000228252.9]


	* STAR-Fusion complete.  See output: /tmp/nxf.DjfA2JGmdp/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)