File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/8364693b6b9a76f129534b9198f960/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:36:48
                             Started mapping on |	Jun 08 10:43:28
                                    Finished on |	Jun 08 11:16:11
       Mapping speed, Million of reads per hour |	479.14

                          Number of input reads |	261265943
                      Average input read length |	202
                                    UNIQUE READS:
                   Uniquely mapped reads number |	248476546
                        Uniquely mapped reads % |	95.10%
                          Average mapped length |	202.00
                       Number of splices: Total |	194502653
            Number of splices: Annotated (sjdb) |	192290239
                       Number of splices: GT/AG |	192284635
                       Number of splices: GC/AG |	1394005
                       Number of splices: AT/AC |	177481
               Number of splices: Non-canonical |	646532
                      Mismatch rate per base, % |	0.21%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.86
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.58
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	9535154
             % of reads mapped to multiple loci |	3.65%
        Number of reads mapped to too many loci |	522320
             % of reads mapped to too many loci |	0.20%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2304642
                 % of reads unmapped: too short |	0.88%
                Number of reads unmapped: other |	427281
                     % of reads unmapped: other |	0.16%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%