File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/b86b4e9efe95c47d23943e876f257f/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 11:12:54
                             Started mapping on |	Jun 08 11:19:32
                                    Finished on |	Jun 08 11:58:55
       Mapping speed, Million of reads per hour |	408.17

                          Number of input reads |	267915314
                      Average input read length |	217
                                    UNIQUE READS:
                   Uniquely mapped reads number |	252393131
                        Uniquely mapped reads % |	94.21%
                          Average mapped length |	215.94
                       Number of splices: Total |	195750783
            Number of splices: Annotated (sjdb) |	192479270
                       Number of splices: GT/AG |	193524174
                       Number of splices: GC/AG |	1331175
                       Number of splices: AT/AC |	150865
               Number of splices: Non-canonical |	744569
                      Mismatch rate per base, % |	0.23%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.82
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.56
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	10247736
             % of reads mapped to multiple loci |	3.82%
        Number of reads mapped to too many loci |	884224
             % of reads mapped to too many loci |	0.33%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	3858029
                 % of reads unmapped: too short |	1.44%
                Number of reads unmapped: other |	532194
                     % of reads unmapped: other |	0.20%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%