Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/45/503758169673f6b79761b4db9d3b84/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/4f0c6d84d857b60e018c50b3a09e7d/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/8d897eed847db634a17a5a5928f387/1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/4f0c6d84d857b60e018c50b3a09e7d/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/ebf041ec28658e92bc5c179598a542/1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
TRAF4--AC011840.1
starfusion
arriba
BFAR--APC2
starfusion
arriba
ME1--UBE3D
starfusion
arriba
TLK2P1--AC110079.1
starfusion
AL669831.4--SEPTIN14
starfusion
PLEKHG1--MTHFD1L
starfusion
arriba
TLK2--AC240565.1
starfusion
MYO18A--KRT18P55
starfusion
AL669831.1--SEPTIN14
starfusion
STON1--GTF2A1L
arriba
RNF135--TMEM132E
arriba
RNF135--AC005552.1
arriba
TVP23C--CDRT4
arriba
GTF2A1L--STON1-GTF2A1L
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
DNAJC6--PDE1C
arriba
0%| | 0/18 [00:00<?, ?it/s]
Processing TRAF4--AC011840.1: 0%| | 0/18 [00:00<?, ?it/s]
Processing TRAF4--AC011840.1: 6%|▌ | 1/18 [00:00<00:01, 9.24it/s]
Processing BFAR--APC2: 6%|▌ | 1/18 [00:00<00:01, 9.24it/s]
Processing BFAR--APC2: 11%|█ | 2/18 [00:00<00:01, 9.47it/s]
Processing ME1--UBE3D: 11%|█ | 2/18 [00:00<00:01, 9.47it/s]
Processing ME1--UBE3D: 17%|█▋ | 3/18 [00:00<00:01, 9.55it/s]
Processing TLK2P1--AC110079.1: 17%|█▋ | 3/18 [00:00<00:01, 9.55it/s]
Processing TLK2P1--AC110079.1: 22%|██▏ | 4/18 [00:00<00:01, 9.58it/s]
Processing AL669831.4--SEPTIN14: 22%|██▏ | 4/18 [00:00<00:01, 9.58it/s]
Processing AL669831.4--SEPTIN14: 28%|██▊ | 5/18 [00:00<00:01, 9.61it/s]
Processing PLEKHG1--MTHFD1L: 28%|██▊ | 5/18 [00:00<00:01, 9.61it/s]
Processing PLEKHG1--MTHFD1L: 33%|███▎ | 6/18 [00:00<00:01, 9.62it/s]
Processing TLK2--AC240565.1: 33%|███▎ | 6/18 [00:00<00:01, 9.62it/s]
Processing TLK2--AC240565.1: 39%|███▉ | 7/18 [00:00<00:01, 9.62it/s]
Processing MYO18A--KRT18P55: 39%|███▉ | 7/18 [00:00<00:01, 9.62it/s]
Processing MYO18A--KRT18P55: 44%|████▍ | 8/18 [00:00<00:01, 9.63it/s]
Processing AL669831.1--SEPTIN14: 44%|████▍ | 8/18 [00:00<00:01, 9.63it/s]
Processing AL669831.1--SEPTIN14: 50%|█████ | 9/18 [00:00<00:00, 9.63it/s]
Processing STON1--GTF2A1L: 50%|█████ | 9/18 [00:00<00:00, 9.63it/s]
Processing STON1--GTF2A1L: 56%|█████▌ | 10/18 [00:01<00:00, 9.64it/s]
Processing RNF135--TMEM132E: 56%|█████▌ | 10/18 [00:01<00:00, 9.64it/s]
Processing RNF135--TMEM132E: 61%|██████ | 11/18 [00:01<00:00, 9.64it/s]
Processing RNF135--AC005552.1: 61%|██████ | 11/18 [00:01<00:00, 9.64it/s]
Processing RNF135--AC005552.1: 67%|██████▋ | 12/18 [00:01<00:00, 9.64it/s]
Processing TVP23C--CDRT4: 67%|██████▋ | 12/18 [00:01<00:00, 9.64it/s]
Processing TVP23C--CDRT4: 72%|███████▏ | 13/18 [00:01<00:00, 9.64it/s]
Processing GTF2A1L--STON1-GTF2A1L: 72%|███████▏ | 13/18 [00:01<00:00, 9.64it/s]
Processing GTF2A1L--STON1-GTF2A1L: 78%|███████▊ | 14/18 [00:01<00:00, 9.64it/s]
Processing PCDHA4--PCDHAC1: 78%|███████▊ | 14/18 [00:01<00:00, 9.64it/s]
Processing PCDHA4--PCDHAC1: 83%|████████▎ | 15/18 [00:01<00:00, 9.64it/s]
Processing PCDHA4--PCDHAC2: 83%|████████▎ | 15/18 [00:01<00:00, 9.64it/s]
Processing PCDHA4--PCDHAC2: 89%|████████▉ | 16/18 [00:01<00:00, 9.64it/s]
Processing PCDHA4--PCDHA13: 89%|████████▉ | 16/18 [00:01<00:00, 9.64it/s]
Processing PCDHA4--PCDHA13: 94%|█████████▍| 17/18 [00:01<00:00, 9.64it/s]
Processing DNAJC6--PDE1C: 94%|█████████▍| 17/18 [00:01<00:00, 9.64it/s]
Processing DNAJC6--PDE1C: 100%|██████████| 18/18 [00:01<00:00, 9.64it/s]
Processing DNAJC6--PDE1C: 100%|██████████| 18/18 [00:01<00:00, 9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory