Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/45/503758169673f6b79761b4db9d3b84/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/4f0c6d84d857b60e018c50b3a09e7d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/8d897eed847db634a17a5a5928f387/1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/4f0c6d84d857b60e018c50b3a09e7d/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/ebf041ec28658e92bc5c179598a542/1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
TRAF4--AC011840.1
starfusion
arriba
BFAR--APC2
starfusion
arriba
ME1--UBE3D
starfusion
arriba
TLK2P1--AC110079.1
starfusion
AL669831.4--SEPTIN14
starfusion
PLEKHG1--MTHFD1L
starfusion
arriba
TLK2--AC240565.1
starfusion
MYO18A--KRT18P55
starfusion
AL669831.1--SEPTIN14
starfusion
STON1--GTF2A1L
arriba
RNF135--TMEM132E
arriba
RNF135--AC005552.1
arriba
TVP23C--CDRT4
arriba
GTF2A1L--STON1-GTF2A1L
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
DNAJC6--PDE1C
arriba

  0%|          | 0/18 [00:00<?, ?it/s]
Processing TRAF4--AC011840.1:   0%|          | 0/18 [00:00<?, ?it/s]
Processing TRAF4--AC011840.1:   6%|▌         | 1/18 [00:00<00:01,  9.24it/s]
Processing BFAR--APC2:   6%|▌         | 1/18 [00:00<00:01,  9.24it/s]       
Processing BFAR--APC2:  11%|█         | 2/18 [00:00<00:01,  9.47it/s]
Processing ME1--UBE3D:  11%|█         | 2/18 [00:00<00:01,  9.47it/s]
Processing ME1--UBE3D:  17%|█▋        | 3/18 [00:00<00:01,  9.55it/s]
Processing TLK2P1--AC110079.1:  17%|█▋        | 3/18 [00:00<00:01,  9.55it/s]
Processing TLK2P1--AC110079.1:  22%|██▏       | 4/18 [00:00<00:01,  9.58it/s]
Processing AL669831.4--SEPTIN14:  22%|██▏       | 4/18 [00:00<00:01,  9.58it/s]
Processing AL669831.4--SEPTIN14:  28%|██▊       | 5/18 [00:00<00:01,  9.61it/s]
Processing PLEKHG1--MTHFD1L:  28%|██▊       | 5/18 [00:00<00:01,  9.61it/s]    
Processing PLEKHG1--MTHFD1L:  33%|███▎      | 6/18 [00:00<00:01,  9.62it/s]
Processing TLK2--AC240565.1:  33%|███▎      | 6/18 [00:00<00:01,  9.62it/s]
Processing TLK2--AC240565.1:  39%|███▉      | 7/18 [00:00<00:01,  9.62it/s]
Processing MYO18A--KRT18P55:  39%|███▉      | 7/18 [00:00<00:01,  9.62it/s]
Processing MYO18A--KRT18P55:  44%|████▍     | 8/18 [00:00<00:01,  9.63it/s]
Processing AL669831.1--SEPTIN14:  44%|████▍     | 8/18 [00:00<00:01,  9.63it/s]
Processing AL669831.1--SEPTIN14:  50%|█████     | 9/18 [00:00<00:00,  9.63it/s]
Processing STON1--GTF2A1L:  50%|█████     | 9/18 [00:00<00:00,  9.63it/s]      
Processing STON1--GTF2A1L:  56%|█████▌    | 10/18 [00:01<00:00,  9.64it/s]
Processing RNF135--TMEM132E:  56%|█████▌    | 10/18 [00:01<00:00,  9.64it/s]
Processing RNF135--TMEM132E:  61%|██████    | 11/18 [00:01<00:00,  9.64it/s]
Processing RNF135--AC005552.1:  61%|██████    | 11/18 [00:01<00:00,  9.64it/s]
Processing RNF135--AC005552.1:  67%|██████▋   | 12/18 [00:01<00:00,  9.64it/s]
Processing TVP23C--CDRT4:  67%|██████▋   | 12/18 [00:01<00:00,  9.64it/s]     
Processing TVP23C--CDRT4:  72%|███████▏  | 13/18 [00:01<00:00,  9.64it/s]
Processing GTF2A1L--STON1-GTF2A1L:  72%|███████▏  | 13/18 [00:01<00:00,  9.64it/s]
Processing GTF2A1L--STON1-GTF2A1L:  78%|███████▊  | 14/18 [00:01<00:00,  9.64it/s]
Processing PCDHA4--PCDHAC1:  78%|███████▊  | 14/18 [00:01<00:00,  9.64it/s]       
Processing PCDHA4--PCDHAC1:  83%|████████▎ | 15/18 [00:01<00:00,  9.64it/s]
Processing PCDHA4--PCDHAC2:  83%|████████▎ | 15/18 [00:01<00:00,  9.64it/s]
Processing PCDHA4--PCDHAC2:  89%|████████▉ | 16/18 [00:01<00:00,  9.64it/s]
Processing PCDHA4--PCDHA13:  89%|████████▉ | 16/18 [00:01<00:00,  9.64it/s]
Processing PCDHA4--PCDHA13:  94%|█████████▍| 17/18 [00:01<00:00,  9.64it/s]
Processing DNAJC6--PDE1C:  94%|█████████▍| 17/18 [00:01<00:00,  9.64it/s]  
Processing DNAJC6--PDE1C: 100%|██████████| 18/18 [00:01<00:00,  9.64it/s]
Processing DNAJC6--PDE1C: 100%|██████████| 18/18 [00:01<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory