Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/3a2d9a092683197e5e748dcb2f5919/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusionreport.tsv
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/cd458b46772546d8c3032f4c7e0fe4/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/cd458b46772546d8c3032f4c7e0fe4/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/e2e99a63ae6a2f460a2531917d1227/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1_2.fastp.fastq.gz
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/e2e99a63ae6a2f460a2531917d1227/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions 1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusionreport.tsv --gtf /tmp/nxf.n5ewjTXfr6/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.n5ewjTXfr6/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1 --shrink_introns --max_intron_length 1000
Done.
Execution Time = 0.13 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions 1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusionreport.tsv --gtf /tmp/nxf.n5ewjTXfr6/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.n5ewjTXfr6/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1 --shrink_introns --max_intron_length 1000
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/fusion_contigs.ok
Running: cp /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fa /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fa
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fa /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fa
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/cp_contigs_file_workdir
Running: cp /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/cp_gtf_file_workdir.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fa /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf > /tmp/nxf.n5ewjTXfr6/cytoBand.txt
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fa /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf > /tmp/nxf.n5ewjTXfr6/cytoBand.txt
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/cytoband.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.bed
-parsing GTF file: /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.bed
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/merged_contig_gtf_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.bed > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.bed > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.bed.sorted.bed
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.bed.bedsort.ok
Running: bgzip -f /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.bed.sorted.bed
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.bed.bgzip.ok
Running: tabix -p bed /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.bed.sorted.bed.gz
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.bed.tabix.ok
Running: samtools faidx /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fa
Execution Time = 0.00 minutes. CMD: samtools faidx /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fa
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/merged_contig_fai.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.n5ewjTXfr6/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fa --max_mate_dist 100000 -G /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf --CPU 8 --out_prefix 1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star --out_dir /tmp/nxf.n5ewjTXfr6/fi_workdir --reads "/tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1_2.fastp.fastq.gz"
* Running CMD: /usr/local/bin/STAR --runThreadN 8 --genomeDir /tmp/nxf.n5ewjTXfr6/ctat_genome_lib_build_dir/ref_genome.fa.star.idx --outSAMtype BAM SortedByCoordinate --twopassMode None --alignSJDBoverhangMin 10 --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705 --alignInsertionFlush Right --alignMatesGapMax 100000 --alignIntronMax 100000 --outSAMattributes All --readFilesIn /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1_2.fastp.fastq.gz --genomeFastaFiles /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fa --outSAMfilter KeepAllAddedReferences --sjdbGTFfile /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf --alignSJstitchMismatchNmax 5 -1 5 5 --scoreGapNoncan -6 --readFilesCommand 'gunzip -c'
Jun 08 10:52:51 ..... started STAR run
Jun 08 10:52:51 ..... loading genome
Jun 08 10:54:38 ... generating Suffix Array index
Jun 08 10:58:45 ... completed Suffix Array index
Jun 08 10:58:45 ..... processing annotations GTF
Jun 08 10:58:45 ..... inserting junctions into the genome indices
Jun 08 10:59:47 ..... started mapping
Jun 08 11:52:38 ..... finished mapping
Jun 08 11:52:40 ..... started sorting BAM
Jun 08 11:52:43 ..... finished successfully
* Running CMD: mv Aligned.sortedByCoord.out.bam 1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.sortedByCoord.out.bam
* Running CMD: samtools index 1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.sortedByCoord.out.bam
Execution Time = 59.96 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.n5ewjTXfr6/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fa --max_mate_dist 100000 -G /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf --CPU 8 --out_prefix 1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star --out_dir /tmp/nxf.n5ewjTXfr6/fi_workdir --reads "/tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1_2.fastp.fastq.gz"
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/run_STAR.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py -i /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.sortedByCoord.out.bam -o /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam --remove_dups
11:53:19 : INFO : Done.
Execution Time = 0.50 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py -i /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.sortedByCoord.out.bam -o /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam --remove_dups
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/mark_dup_reads.ok
Running: samtools index /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam
Execution Time = 0.06 minutes. CMD: samtools index /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/mark_dups_reads.index.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam
-parsing GTF file: /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf
-parsing /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam
[10000]
[20000]
[30000]
[40000]
[50000]
[60000]
[70000]
[80000]
[90000]
[100000]
[110000]
[120000]
[130000]
[140000]
[150000]
[160000]
[170000]
[180000]
[190000]
[200000]
[210000]
[220000]
[230000]
[240000]
[250000]
[260000]
[270000]
[280000]
[290000]
[300000]
[310000]
[320000]
[330000]
[340000]
[350000]
[360000]
[370000]
[380000]
[390000]
[400000]
[410000]
[420000]
[430000]
[440000]
[450000]
[460000]
[470000]
[480000]
[490000]
[500000]
[510000]
[520000]
[530000]
[540000]
[550000]
[560000]
[570000]
[580000]
[590000]
[600000]
[610000]
[620000]
[630000]
[640000]
[650000]
[660000]
[670000]
[680000]
[690000]
[700000]
[710000]
[720000]
[730000]
[740000]
[750000]
[760000]
[770000]
[780000]
[790000]
[800000]
[810000]
[820000]
[830000]
[840000]
[850000]
[860000]
[870000]
[880000]
[890000]
[900000]
[910000]
[920000]
[930000]
[940000]
[950000]
[960000]
[970000]
[980000]
[990000]
[1000000]
[1010000]
[1020000]
[1030000]
[1040000]
[1050000]
[1060000]
[1070000]
[1080000]
[1090000]
[1100000]
[1110000]
[1120000]
[1130000]
[1140000]
[1150000]
[1160000]
[1170000]
[1180000]
[1190000]
[1200000]
[1210000]
[1220000]
[1230000]
[1240000]
[1250000]
[1260000]
[1270000]
[1280000]
[1290000]
[1300000]
[1310000]
[1320000]
[1330000]
[1340000]
[1350000]
[1360000]
[1370000]
[1380000]
[1390000]
[1400000]
[1410000]
[1420000]
[1430000]
[1440000]
[1450000]
[1460000]
[1470000]
[1480000]
[1490000]
[1500000]
[1510000]
[1520000]
[1530000]
[1540000]
[1550000]
[1560000]
[1570000]
[1580000]
[1590000]
[1600000]
[1610000]
[1620000]
[1630000]
[1640000]
[1650000]
[1660000]
[1670000]
[1680000]
[1690000]
[1700000]
[1710000]
[1720000]
[1730000]
[1740000]
[1750000]
[1760000]
[1770000]
[1780000]
[1790000]
[1800000]
[1810000]
[1820000]
[1830000]
[1840000]
[1850000]
[1860000]
[1870000]
[1880000]
[1890000]
[1900000]
[1910000]
[1920000]
[1930000]
[1940000]
[1950000]
[1960000]
[1970000]
[1980000]
[1990000]
[2000000]
[2010000]
[2020000]
[2030000]
[2040000]
[2050000]
[2060000]
[2070000]
[2080000]
[2090000]
[2100000]
[2110000]
[2120000]
[2130000]
[2140000]
[2150000]
[2160000]
[2170000]
[2180000]
[2190000]
[2200000]
[2210000]
[2220000]
[2230000]
[2240000]
[2250000]
[2260000]
[2270000]
[2280000]
[2290000]
[2300000]
[2310000]
[2320000]
[2330000]
[2340000]
[2350000]
[2360000]
[2370000]
[2380000]
[2390000]
[2400000]
[2410000]
[2420000]
[2430000]
[2440000]
[2450000]
[2460000]
[2470000]
[2480000]
[2490000]
[2500000]
[2510000]
[2520000]
[2530000]
[2540000]
[2550000]
[2560000]
[2570000]
[2580000]
[2590000]
[2600000]
[2610000]
[2620000]
[2630000]
[2640000]
[2650000]
[2660000]
[2670000]
[2680000]
[2690000]
[2700000]
[2710000]
[2720000]
[2730000]
[2740000]
[2750000]
[2760000]
[2770000]
[2780000]
[2790000]
[2800000]
[2810000]
[2820000]
[2830000]
[2840000]
[2850000]
[2860000]
[2870000]
[2880000]
[2890000]
[2900000]
[2910000]
[2920000]
[2930000]
[2940000]
[2950000]
[2960000]
[2970000]
[2980000]
[2990000]
[3000000]
[3010000]
[3020000]
[3030000]
[3040000]
[3050000]
[3060000]
[3070000]
[3080000]
[3090000]
[3100000]
[3110000]
[3120000]
[3130000]
[3140000]
[3150000]
[3160000]
[3170000]
[3180000]
[3190000]
[3200000]
[3210000]
[3220000]
[3230000]
[3240000]
[3250000]
[3260000]
[3270000]
[3280000]
[3290000]
[3300000]
[3310000]
[3320000]
[3330000]
[3340000]
[3350000]
[3360000]
[3370000]
[3380000]
[3390000]
[3400000]
[3410000]
[3420000]
[3430000]
[3440000]
[3450000]
[3460000]
[3470000]
[3480000]
[3490000]
[3500000]
[3510000]
[3520000]
[3530000]
[3540000]
[3550000]
[3560000]
[3570000]
[3580000]
[3590000]
[3600000]
[3610000]
[3620000]
[3630000]
[3640000]
[3650000]
[3660000]
[3670000]
[3680000]
[3690000]
[3700000]
[3710000]
[3720000]
[3730000]
[3740000]
[3750000]
[3760000]
[3770000]
[3780000]
[3790000]
[3800000]
[3810000]
[3820000]
[3830000]
[3840000]
[3850000]
[3860000]
[3870000]
[3880000]
[3890000]
[3900000]
[3910000]
[3920000]
[3930000]
[3940000]
[3950000]
[3960000]
[3970000]
[3980000]
[3990000]
[4000000]
[4010000]
[4020000]
[4030000]
[4040000]
[4050000]
[4060000]
[4070000]
[4080000]
[4090000]
[4100000]
[4110000]
[4120000]
[4130000]
[4140000]
[4150000]
[4160000]
[4170000]
[4180000]
[4190000]
[4200000]
[4210000]
[4220000]
[4230000]
[4240000]
[4250000]
[4260000]
[4270000]
[4280000]
[4290000]
[4300000]
[4310000]
[4320000]
[4330000]
[4340000]
[4350000]
[4360000]
[4370000]
[4380000]
[4390000]
[4400000]
[4410000]
[4420000]
[4430000]
[4440000]
[4450000]
[4460000]
[4470000]
[4480000]
[4490000]
[4500000]
[4510000]
[4520000]
[4530000]
[4540000]
[4550000]
[4560000]
[4570000]
[4580000]
[4590000]
[4600000]
[4610000]
[4620000]
[4630000]
[4640000]
[4650000]
[4660000]
[4670000]
[4680000]
[4690000]
[4700000]
[4710000]
[4720000]
[4730000]
[4740000]
[4750000]
[4760000]
[4770000]
[4780000]
[4790000]
[4800000]
[4810000]
[4820000]
[4830000]
[4840000]
[4850000]
[4860000]
[4870000]
[4880000]
[4890000]
[4900000]
[4910000]
[4920000]
[4930000]
[4940000]
[4950000]
[4960000]
[4970000]
[4980000]
[4990000]
[5000000]
[5010000]
[5020000]
[5030000]
[5040000]
[5050000]
[5060000]
[5070000]
[5080000]
[5090000]
[5100000]
[5110000]
[5120000]
[5130000]
[5140000]
[5150000]
[5160000]
[5170000]
[5180000]
[5190000]
[5200000]
[5210000]
[5220000]
[5230000]
[5240000]
[5250000]
[5260000]
[5270000]
[5280000]
[5290000]
[5300000]
[5310000]
[5320000]
[5330000]
[5340000]
[5350000]
[5360000]
[5370000]
[5380000]
[5390000]
[5400000]
[5410000]
[5420000]
[5430000]
[5440000]
[5450000]
[5460000]
[5470000]
[5480000]
[5490000]
[5500000]
[5510000]
[5520000]
[5530000]
[5540000]
[5550000]
[5560000]
[5570000]
[5580000]
[5590000]
[5600000]
[5610000]
[5620000]
[5630000]
[5640000]
[5650000]
[5660000]
[5670000]
[5680000]
[5690000]
[5700000]
[5710000]
[5720000]
[5730000]
[5740000]
[5750000]
[5760000]
[5770000]
[5780000]
[5790000]
[5800000]
[5810000]
[5820000]
[5830000]
[5840000]
[5850000]
[5860000]
[5870000]
[5880000]
[5890000]
[5900000]
[5910000]
[5920000]
[5930000]
[5940000]
[5950000]
[5960000]
[5970000]
[5980000]
[5990000]
[6000000]
[6010000]
[6020000]
[6030000]
[6040000]
[6050000]
[6060000]
[6070000]
[6080000]
[6090000]
[6100000]
[6110000]
[6120000]
[6130000]
[6140000]
[6150000]
[6160000]
[6170000]
[6180000]
[6190000]
[6200000]
[6210000]
[6220000]
[6230000]
[6240000]
[6250000]
[6260000]
[6270000]
[6280000]
[6290000]
[6300000]
[6310000]
[6320000]
[6330000]
[6340000]
[6350000]
[6360000]
[6370000]
[6380000]
[6390000]
[6400000]
[6410000]
[6420000]
[6430000]
[6440000]
[6450000]
[6460000]
[6470000]
[6480000]
[6490000]
[6500000]
[6510000]
[6520000]
[6530000]
[6540000]
[6550000]
[6560000]
[6570000]
[6580000]
[6590000]
[6600000]
[6610000]
[6620000]
[6630000]
[6640000]
[6650000]
[6660000]
[6670000]
[6680000]
[6690000]
[6700000] -done parsing /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam. Extracting junction info.
junction read elimination tally: $VAR1 = {
'num genes matched < 2' => 250,
'num_hits: 5 != num_counted_on_fusion_contigs 2 ' => 100,
'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 86,
'num_hits: 5 != num_counted_on_fusion_contigs 3 ' => 3,
'num_hits: 6 != num_counted_on_fusion_contigs 2 ' => 8,
'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 13,
' ** passed ** ' => 22995,
'per_id < 96' => 34735,
'seq-similar region overlap' => 2,
'small anchor length' => 90,
'low complexity anchor region' => 71,
'excessive soft clipping' => 110105,
'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 54,
'num_hits: 5 != num_counted_on_fusion_contigs 4 ' => 200,
'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 1845,
'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 22,
'exons hit < 2' => 13,
'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 58
};
-writing fusion junction support info.
Execution Time = 4.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/get_fusion_JUNCTION_reads_from_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam
-outputting the spanning read info: /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info.
- counting read alignments among fusion contigs.
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000] -fusion SPANNING read extraction for scaff: AC092807.3--DDAH1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000]
[217000]
[218000]
[219000]
[220000]
[221000]
[222000]
[223000]
[224000]
[225000]
[226000]
[227000]
[228000]
[229000]
[230000]
[231000]
[232000]
[233000]
[234000]
[235000]
[236000]
[237000]
[238000]
[239000]
[240000]
[241000]
[242000]
[243000]
[244000]
[245000]
[246000]
[247000]
[248000]
[249000]
[250000]
[251000]
[252000]
[253000]
[254000]
[255000]
[256000]
[257000]
[258000]
[259000]
[260000]
[261000]
[262000]
[263000]
[264000]
[265000]
[266000]
[267000]
[268000]
[269000]
[270000]
[271000]
[272000]
[273000]
[274000]
[275000]
[276000]
[277000]
[278000]
[279000]
[280000]
[281000]
[282000]
[283000]
[284000]
[285000]
[286000]
[287000]
[288000]
[289000]
[290000]
[291000]
[292000]
[293000]
[294000]
[295000]
[296000]
[297000]
[298000]
[299000]
[300000]
[301000]
[302000]
[303000]
[304000]
[305000]
[306000]
[307000]
[308000]
[309000]
[310000]
[311000]
[312000]
[313000]
[314000]
[315000]
[316000]
[317000]
[318000]
[319000]
[320000]
[321000]
[322000]
[323000]
[324000]
[325000]
[326000]
[327000]
[328000]
[329000]
[330000]
[331000]
[332000]
[333000]
[334000]
[335000]
[336000]
[337000]
[338000]
[339000]
[340000]
[341000]
[342000]
[343000]
[344000]
[345000]
[346000]
[347000]
[348000]
[349000]
[350000]
[351000]
[352000]
[353000]
[354000]
[355000]
[356000]
[357000]
[358000]
[359000]
[360000]
[361000]
[362000]
[363000]
[364000]
[365000]
[366000]
[367000]
[368000]
[369000]
[370000]
[371000]
[372000]
[373000]
[374000]
[375000]
[376000]
[377000]
[378000]
[379000]
[380000]
[381000]
[382000]
[383000]
[384000]
[385000]
[386000]
[387000]
[388000]
[389000]
[390000]
[391000]
[392000]
[393000]
[394000]
[395000]
[396000]
[397000]
[398000]
[399000]
[400000]
[401000]
[402000]
[403000]
[404000]
[405000]
[406000]
[407000]
[408000]
[409000]
[410000]
[411000]
[412000]
[413000]
[414000]
[415000]
[416000]
[417000]
[418000]
[419000]
[420000]
[421000]
[422000]
[423000]
[424000]
[425000]
[426000]
[427000]
[428000]
[429000]
[430000]
[431000]
[432000]
[433000]
[434000]
[435000]
[436000]
[437000]
[438000]
[439000]
[440000]
[441000]
[442000]
[443000]
[444000]
[445000]
[446000]
[447000]
[448000]
[449000]
[450000]
[451000]
[452000]
[453000]
[454000]
[455000]
[456000]
[457000]
[458000]
[459000]
[460000]
[461000]
[462000]
[463000]
[464000]
[465000]
[466000]
[467000]
[468000]
[469000]
[470000]
[471000]
[472000]
[473000]
[474000]
[475000]
[476000]
[477000]
[478000]
[479000]
[480000]
[481000]
[482000]
[483000]
[484000]
[485000]
[486000]
[487000]
[488000]
[489000]
[490000]
[491000]
[492000]
[493000]
[494000]
[495000]
[496000]
[497000]
[498000]
[499000]
[500000]
[501000]
[502000]
[503000]
[504000]
[505000]
[506000]
[507000]
[508000]
[509000]
[510000]
[511000]
[512000]
[513000]
[514000]
[515000]
[516000]
[517000]
[518000]
[519000]
[520000]
[521000]
[522000]
[523000]
[524000]
[525000]
[526000]
[527000]
[528000]
[529000]
[530000]
[531000]
[532000]
[533000]
[534000]
[535000]
[536000]
[537000]
[538000]
[539000]
[540000]
[541000]
[542000]
[543000]
[544000]
[545000]
[546000]
[547000]
[548000]
[549000]
[550000]
[551000]
[552000]
[553000]
[554000]
[555000]
[556000]
[557000]
[558000]
[559000]
[560000]
[561000]
[562000]
[563000]
[564000]
[565000]
[566000]
[567000]
[568000]
[569000]
[570000]
[571000]
[572000]
[573000]
[574000]
[575000]
[576000]
[577000]
[578000]
[579000]
[580000]
[581000]
[582000]
[583000]
[584000]
[585000]
[586000]
[587000]
[588000]
[589000]
[590000]
[591000]
[592000]
[593000]
[594000]
[595000]
[596000]
[597000]
[598000]
[599000]
[600000]
[601000]
[602000]
[603000]
[604000]
[605000]
[606000]
[607000]
[608000]
[609000]
[610000]
[611000] -fusion SPANNING read extraction for scaff: ACTN1--DCAF5
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000] -fusion SPANNING read extraction for scaff: ANAPC2--CLIC3
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000] -fusion SPANNING read extraction for scaff: AP2B1--MYO18A
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000]
[217000]
[218000]
[219000]
[220000]
[221000]
[222000]
[223000]
[224000]
[225000]
[226000]
[227000]
[228000]
[229000]
[230000]
[231000]
[232000]
[233000]
[234000]
[235000]
[236000]
[237000]
[238000]
[239000]
[240000]
[241000]
[242000]
[243000]
[244000]
[245000]
[246000]
[247000]
[248000]
[249000]
[250000]
[251000]
[252000]
[253000]
[254000]
[255000]
[256000]
[257000]
[258000]
[259000]
[260000]
[261000]
[262000]
[263000]
[264000]
[265000]
[266000]
[267000]
[268000]
[269000]
[270000]
[271000]
[272000]
[273000]
[274000]
[275000]
[276000]
[277000]
[278000]
[279000]
[280000]
[281000]
[282000]
[283000]
[284000]
[285000]
[286000]
[287000]
[288000]
[289000]
[290000]
[291000]
[292000]
[293000]
[294000]
[295000]
[296000]
[297000]
[298000]
[299000]
[300000]
[301000]
[302000]
[303000]
[304000]
[305000]
[306000]
[307000]
[308000]
[309000]
[310000]
[311000]
[312000]
[313000]
[314000]
[315000]
[316000]
[317000]
[318000]
[319000]
[320000]
[321000]
[322000]
[323000]
[324000]
[325000]
[326000]
[327000]
[328000]
[329000]
[330000]
[331000]
[332000]
[333000]
[334000]
[335000]
[336000]
[337000]
[338000]
[339000]
[340000]
[341000]
[342000]
[343000]
[344000]
[345000]
[346000]
[347000]
[348000]
[349000]
[350000]
[351000]
[352000]
[353000]
[354000]
[355000]
[356000]
[357000]
[358000]
[359000]
[360000]
[361000]
[362000]
[363000]
[364000]
[365000]
[366000]
[367000]
[368000]
[369000]
[370000]
[371000]
[372000]
[373000]
[374000]
[375000]
[376000]
[377000]
[378000]
[379000]
[380000]
[381000]
[382000]
[383000]
[384000]
[385000]
[386000]
[387000]
[388000]
[389000]
[390000]
[391000]
[392000]
[393000]
[394000]
[395000]
[396000]
[397000]
[398000]
[399000]
[400000]
[401000]
[402000]
[403000]
[404000]
[405000]
[406000]
[407000]
[408000]
[409000]
[410000]
[411000]
[412000]
[413000]
[414000]
[415000]
[416000]
[417000]
[418000]
[419000]
[420000]
[421000]
[422000]
[423000]
[424000]
[425000]
[426000]
[427000]
[428000]
[429000]
[430000]
[431000]
[432000]
[433000]
[434000]
[435000]
[436000]
[437000]
[438000]
[439000]
[440000]
[441000]
[442000]
[443000]
[444000]
[445000]
[446000]
[447000]
[448000]
[449000]
[450000]
[451000]
[452000]
[453000]
[454000]
[455000]
[456000]
[457000]
[458000]
[459000]
[460000]
[461000]
[462000]
[463000]
[464000]
[465000]
[466000]
[467000]
[468000]
[469000]
[470000]
[471000]
[472000]
[473000]
[474000]
[475000]
[476000]
[477000]
[478000]
[479000]
[480000]
[481000]
[482000]
[483000]
[484000]
[485000]
[486000]
[487000]
[488000]
[489000]
[490000]
[491000]
[492000]
[493000]
[494000]
[495000]
[496000]
[497000]
[498000]
[499000]
[500000]
[501000]
[502000]
[503000]
[504000]
[505000]
[506000]
[507000]
[508000]
[509000]
[510000]
[511000]
[512000]
[513000]
[514000]
[515000]
[516000]
[517000]
[518000]
[519000]
[520000]
[521000]
[522000]
[523000]
[524000]
[525000]
[526000]
[527000]
[528000]
[529000]
[530000]
[531000]
[532000]
[533000]
[534000]
[535000]
[536000]
[537000]
[538000]
[539000]
[540000]
[541000]
[542000]
[543000]
[544000]
[545000]
[546000]
[547000]
[548000]
[549000]
[550000]
[551000]
[552000]
[553000]
[554000]
[555000]
[556000]
[557000]
[558000]
[559000]
[560000]
[561000]
[562000]
[563000]
[564000]
[565000]
[566000]
[567000]
[568000]
[569000]
[570000]
[571000]
[572000]
[573000]
[574000]
[575000]
[576000]
[577000]
[578000]
[579000]
[580000]
[581000]
[582000]
[583000]
[584000]
[585000]
[586000]
[587000]
[588000]
[589000]
[590000]
[591000]
[592000]
[593000]
[594000]
[595000]
[596000]
[597000]
[598000]
[599000]
[600000]
[601000]
[602000]
[603000]
[604000]
[605000]
[606000]
[607000]
[608000]
[609000]
[610000]
[611000]
[612000]
[613000]
[614000]
[615000]
[616000]
[617000]
[618000]
[619000]
[620000]
[621000]
[622000]
[623000]
[624000]
[625000]
[626000]
[627000]
[628000]
[629000]
[630000]
[631000]
[632000]
[633000]
[634000]
[635000]
[636000]
[637000]
[638000]
[639000]
[640000]
[641000]
[642000]
[643000]
[644000]
[645000]
[646000]
[647000]
[648000]
[649000]
[650000]
[651000]
[652000]
[653000]
[654000]
[655000]
[656000]
[657000]
[658000]
[659000]
[660000]
[661000]
[662000]
[663000]
[664000]
[665000]
[666000]
[667000]
[668000]
[669000]
[670000]
[671000]
[672000]
[673000]
[674000]
[675000]
[676000]
[677000]
[678000]
[679000]
[680000]
[681000]
[682000]
[683000]
[684000]
[685000]
[686000]
[687000]
[688000]
[689000]
[690000]
[691000]
[692000]
[693000]
[694000]
[695000]
[696000]
[697000]
[698000]
[699000]
[700000]
[701000]
[702000]
[703000]
[704000]
[705000]
[706000]
[707000]
[708000]
[709000]
[710000]
[711000]
[712000]
[713000]
[714000]
[715000]
[716000]
[717000]
[718000]
[719000] -fusion SPANNING read extraction for scaff: ATF7--FMNL3
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000]
[217000]
[218000]
[219000]
[220000]
[221000]
[222000]
[223000]
[224000]
[225000]
[226000]
[227000]
[228000]
[229000]
[230000]
[231000]
[232000]
[233000]
[234000]
[235000]
[236000]
[237000]
[238000]
[239000]
[240000]
[241000]
[242000]
[243000]
[244000]
[245000]
[246000]
[247000]
[248000]
[249000]
[250000]
[251000]
[252000]
[253000]
[254000]
[255000]
[256000]
[257000]
[258000]
[259000]
[260000]
[261000]
[262000]
[263000]
[264000]
[265000]
[266000]
[267000]
[268000]
[269000]
[270000]
[271000]
[272000]
[273000]
[274000]
[275000]
[276000]
[277000]
[278000]
[279000]
[280000]
[281000]
[282000]
[283000]
[284000]
[285000]
[286000]
[287000]
[288000]
[289000]
[290000]
[291000]
[292000]
[293000]
[294000]
[295000]
[296000]
[297000]
[298000]
[299000]
[300000]
[301000]
[302000]
[303000]
[304000]
[305000]
[306000]
[307000]
[308000]
[309000]
[310000]
[311000]
[312000]
[313000]
[314000]
[315000]
[316000]
[317000]
[318000]
[319000]
[320000]
[321000]
[322000]
[323000]
[324000]
[325000]
[326000]
[327000]
[328000]
[329000]
[330000]
[331000]
[332000]
[333000]
[334000]
[335000]
[336000]
[337000]
[338000]
[339000]
[340000]
[341000]
[342000]
[343000]
[344000]
[345000]
[346000]
[347000]
[348000]
[349000]
[350000]
[351000]
[352000]
[353000]
[354000]
[355000]
[356000]
[357000]
[358000]
[359000]
[360000]
[361000]
[362000]
[363000]
[364000]
[365000]
[366000]
[367000]
[368000]
[369000]
[370000]
[371000]
[372000]
[373000]
[374000]
[375000]
[376000]
[377000]
[378000]
[379000]
[380000]
[381000]
[382000]
[383000]
[384000]
[385000]
[386000]
[387000]
[388000]
[389000]
[390000]
[391000]
[392000]
[393000]
[394000]
[395000]
[396000]
[397000]
[398000]
[399000]
[400000]
[401000]
[402000]
[403000]
[404000]
[405000]
[406000]
[407000]
[408000]
[409000]
[410000]
[411000]
[412000]
[413000]
[414000]
[415000]
[416000]
[417000]
[418000]
[419000]
[420000]
[421000]
[422000]
[423000]
[424000]
[425000]
[426000]
[427000]
[428000]
[429000]
[430000]
[431000]
[432000]
[433000]
[434000]
[435000]
[436000]
[437000]
[438000]
[439000]
[440000]
[441000]
[442000]
[443000]
[444000]
[445000]
[446000]
[447000]
[448000]
[449000]
[450000]
[451000]
[452000]
[453000]
[454000]
[455000]
[456000]
[457000]
[458000]
[459000]
[460000]
[461000]
[462000]
[463000]
[464000]
[465000]
[466000]
[467000]
[468000]
[469000]
[470000]
[471000]
[472000]
[473000]
[474000]
[475000]
[476000]
[477000]
[478000]
[479000]
[480000]
[481000]
[482000]
[483000]
[484000]
[485000]
[486000]
[487000]
[488000]
[489000]
[490000]
[491000]
[492000]
[493000]
[494000]
[495000]
[496000]
[497000]
[498000]
[499000]
[500000]
[501000]
[502000]
[503000]
[504000]
[505000]
[506000]
[507000]
[508000]
[509000] -fusion SPANNING read extraction for scaff: COPS7B--ITGB1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000]
[217000]
[218000]
[219000]
[220000]
[221000]
[222000]
[223000]
[224000]
[225000]
[226000]
[227000]
[228000]
[229000]
[230000]
[231000]
[232000]
[233000]
[234000]
[235000]
[236000]
[237000]
[238000]
[239000]
[240000]
[241000]
[242000]
[243000]
[244000]
[245000]
[246000]
[247000]
[248000]
[249000]
[250000]
[251000]
[252000]
[253000]
[254000]
[255000]
[256000]
[257000]
[258000]
[259000]
[260000]
[261000]
[262000]
[263000]
[264000]
[265000]
[266000]
[267000]
[268000]
[269000]
[270000]
[271000]
[272000]
[273000]
[274000]
[275000]
[276000]
[277000]
[278000]
[279000]
[280000]
[281000]
[282000]
[283000]
[284000]
[285000]
[286000]
[287000]
[288000]
[289000]
[290000]
[291000]
[292000]
[293000]
[294000]
[295000]
[296000]
[297000]
[298000]
[299000]
[300000]
[301000]
[302000]
[303000]
[304000]
[305000]
[306000]
[307000]
[308000]
[309000]
[310000]
[311000]
[312000]
[313000]
[314000]
[315000]
[316000]
[317000]
[318000]
[319000]
[320000]
[321000]
[322000]
[323000]
[324000]
[325000]
[326000]
[327000]
[328000]
[329000]
[330000]
[331000]
[332000]
[333000]
[334000]
[335000]
[336000]
[337000]
[338000]
[339000]
[340000]
[341000]
[342000]
[343000]
[344000]
[345000]
[346000]
[347000]
[348000]
[349000]
[350000]
[351000]
[352000]
[353000]
[354000]
[355000]
[356000]
[357000]
[358000]
[359000]
[360000]
[361000]
[362000]
[363000]
[364000]
[365000]
[366000]
[367000]
[368000]
[369000]
[370000]
[371000]
[372000]
[373000]
[374000]
[375000]
[376000]
[377000]
[378000]
[379000]
[380000]
[381000]
[382000]
[383000]
[384000]
[385000]
[386000]
[387000]
[388000]
[389000]
[390000]
[391000]
[392000]
[393000]
[394000]
[395000]
[396000]
[397000]
[398000]
[399000]
[400000]
[401000]
[402000]
[403000]
[404000]
[405000]
[406000]
[407000]
[408000]
[409000]
[410000]
[411000]
[412000]
[413000]
[414000]
[415000]
[416000]
[417000]
[418000]
[419000]
[420000]
[421000]
[422000]
[423000]
[424000]
[425000]
[426000]
[427000]
[428000]
[429000]
[430000]
[431000]
[432000]
[433000]
[434000]
[435000]
[436000]
[437000]
[438000]
[439000]
[440000]
[441000]
[442000]
[443000]
[444000]
[445000]
[446000]
[447000]
[448000]
[449000]
[450000]
[451000]
[452000]
[453000]
[454000]
[455000]
[456000] -fusion SPANNING read extraction for scaff: CSAD--ANO6
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000]
[217000]
[218000]
[219000]
[220000]
[221000]
[222000]
[223000]
[224000]
[225000]
[226000]
[227000]
[228000]
[229000]
[230000]
[231000]
[232000]
[233000]
[234000]
[235000]
[236000]
[237000]
[238000]
[239000]
[240000]
[241000]
[242000]
[243000]
[244000]
[245000]
[246000]
[247000]
[248000]
[249000]
[250000]
[251000]
[252000]
[253000]
[254000]
[255000]
[256000]
[257000]
[258000]
[259000]
[260000]
[261000]
[262000]
[263000]
[264000]
[265000]
[266000]
[267000]
[268000]
[269000]
[270000]
[271000]
[272000]
[273000]
[274000]
[275000]
[276000]
[277000]
[278000]
[279000]
[280000]
[281000]
[282000]
[283000]
[284000]
[285000]
[286000]
[287000]
[288000]
[289000]
[290000]
[291000]
[292000]
[293000]
[294000]
[295000]
[296000]
[297000]
[298000]
[299000]
[300000]
[301000]
[302000]
[303000]
[304000]
[305000]
[306000]
[307000]
[308000]
[309000]
[310000]
[311000]
[312000]
[313000]
[314000]
[315000]
[316000]
[317000]
[318000]
[319000]
[320000]
[321000]
[322000]
[323000]
[324000]
[325000]
[326000]
[327000]
[328000]
[329000]
[330000]
[331000]
[332000]
[333000]
[334000]
[335000]
[336000]
[337000]
[338000]
[339000]
[340000]
[341000]
[342000]
[343000]
[344000]
[345000]
[346000]
[347000] -fusion SPANNING read extraction for scaff: FRS2--CCT2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000] -fusion SPANNING read extraction for scaff: FYTTD1--AC024560.2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000] -fusion SPANNING read extraction for scaff: FYTTD1--AC024560.3
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000] -fusion SPANNING read extraction for scaff: GNS--KRT87P
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000]
[217000]
[218000]
[219000]
[220000]
[221000]
[222000]
[223000]
[224000]
[225000]
[226000]
[227000]
[228000]
[229000]
[230000]
[231000]
[232000]
[233000]
[234000]
[235000]
[236000]
[237000]
[238000]
[239000]
[240000]
[241000]
[242000]
[243000]
[244000]
[245000]
[246000]
[247000]
[248000]
[249000]
[250000]
[251000]
[252000]
[253000]
[254000]
[255000]
[256000]
[257000]
[258000]
[259000]
[260000]
[261000]
[262000]
[263000]
[264000]
[265000]
[266000]
[267000]
[268000]
[269000]
[270000]
[271000]
[272000]
[273000]
[274000]
[275000]
[276000]
[277000]
[278000]
[279000]
[280000]
[281000]
[282000]
[283000]
[284000]
[285000]
[286000]
[287000]
[288000]
[289000]
[290000]
[291000]
[292000]
[293000]
[294000]
[295000]
[296000]
[297000]
[298000]
[299000]
[300000]
[301000]
[302000]
[303000]
[304000]
[305000]
[306000]
[307000]
[308000]
[309000]
[310000]
[311000]
[312000]
[313000]
[314000]
[315000]
[316000]
[317000]
[318000]
[319000]
[320000]
[321000]
[322000]
[323000]
[324000]
[325000]
[326000]
[327000]
[328000]
[329000]
[330000]
[331000]
[332000]
[333000]
[334000]
[335000]
[336000]
[337000]
[338000]
[339000]
[340000]
[341000]
[342000]
[343000]
[344000]
[345000]
[346000]
[347000]
[348000]
[349000]
[350000]
[351000]
[352000]
[353000]
[354000]
[355000]
[356000]
[357000]
[358000]
[359000]
[360000]
[361000]
[362000]
[363000]
[364000]
[365000]
[366000]
[367000]
[368000]
[369000]
[370000]
[371000]
[372000]
[373000]
[374000]
[375000]
[376000]
[377000]
[378000]
[379000]
[380000]
[381000]
[382000]
[383000]
[384000]
[385000]
[386000]
[387000]
[388000]
[389000]
[390000]
[391000]
[392000]
[393000]
[394000]
[395000]
[396000]
[397000]
[398000]
[399000]
[400000]
[401000]
[402000]
[403000]
[404000]
[405000]
[406000]
[407000]
[408000]
[409000]
[410000]
[411000]
[412000]
[413000]
[414000]
[415000]
[416000]
[417000]
[418000]
[419000]
[420000]
[421000]
[422000]
[423000]
[424000]
[425000]
[426000]
[427000]
[428000]
[429000]
[430000]
[431000]
[432000]
[433000]
[434000]
[435000]
[436000]
[437000]
[438000]
[439000]
[440000]
[441000]
[442000]
[443000]
[444000]
[445000]
[446000]
[447000]
[448000]
[449000]
[450000]
[451000]
[452000]
[453000]
[454000]
[455000]
[456000]
[457000]
[458000]
[459000]
[460000]
[461000]
[462000]
[463000]
[464000]
[465000]
[466000]
[467000]
[468000]
[469000]
[470000]
[471000]
[472000]
[473000]
[474000]
[475000]
[476000]
[477000]
[478000]
[479000]
[480000]
[481000]
[482000]
[483000]
[484000]
[485000]
[486000]
[487000]
[488000]
[489000]
[490000]
[491000]
[492000]
[493000]
[494000]
[495000]
[496000]
[497000]
[498000]
[499000]
[500000]
[501000]
[502000]
[503000]
[504000]
[505000]
[506000]
[507000]
[508000]
[509000]
[510000]
[511000]
[512000]
[513000]
[514000]
[515000]
[516000]
[517000]
[518000]
[519000]
[520000]
[521000]
[522000]
[523000]
[524000]
[525000]
[526000]
[527000]
[528000]
[529000]
[530000]
[531000]
[532000]
[533000]
[534000]
[535000]
[536000]
[537000]
[538000]
[539000]
[540000]
[541000]
[542000]
[543000]
[544000]
[545000]
[546000]
[547000]
[548000]
[549000]
[550000]
[551000]
[552000]
[553000]
[554000]
[555000]
[556000]
[557000]
[558000]
[559000]
[560000]
[561000]
[562000]
[563000]
[564000]
[565000]
[566000]
[567000]
[568000]
[569000]
[570000]
[571000]
[572000]
[573000]
[574000]
[575000]
[576000]
[577000]
[578000]
[579000]
[580000]
[581000]
[582000]
[583000]
[584000]
[585000]
[586000]
[587000]
[588000]
[589000]
[590000]
[591000]
[592000]
[593000]
[594000]
[595000]
[596000]
[597000]
[598000]
[599000]
[600000]
[601000]
[602000]
[603000]
[604000]
[605000]
[606000]
[607000]
[608000]
[609000]
[610000]
[611000]
[612000]
[613000]
[614000]
[615000]
[616000]
[617000]
[618000]
[619000]
[620000]
[621000]
[622000]
[623000]
[624000]
[625000]
[626000]
[627000]
[628000]
[629000]
[630000]
[631000]
[632000]
[633000]
[634000]
[635000]
[636000]
[637000]
[638000]
[639000]
[640000]
[641000]
[642000]
[643000]
[644000]
[645000]
[646000]
[647000]
[648000]
[649000]
[650000]
[651000]
[652000]
[653000]
[654000]
[655000]
[656000]
[657000]
[658000]
[659000]
[660000]
[661000]
[662000]
[663000]
[664000]
[665000]
[666000]
[667000]
[668000]
[669000]
[670000]
[671000]
[672000]
[673000]
[674000]
[675000]
[676000]
[677000]
[678000]
[679000]
[680000]
[681000]
[682000]
[683000]
[684000]
[685000]
[686000]
[687000]
[688000]
[689000]
[690000]
[691000]
[692000]
[693000]
[694000]
[695000]
[696000]
[697000]
[698000]
[699000]
[700000]
[701000]
[702000]
[703000]
[704000]
[705000]
[706000]
[707000]
[708000]
[709000]
[710000]
[711000]
[712000]
[713000]
[714000]
[715000]
[716000]
[717000]
[718000]
[719000]
[720000]
[721000]
[722000]
[723000]
[724000]
[725000]
[726000]
[727000]
[728000]
[729000]
[730000]
[731000]
[732000]
[733000]
[734000]
[735000]
[736000]
[737000]
[738000]
[739000]
[740000]
[741000]
[742000]
[743000]
[744000]
[745000]
[746000]
[747000]
[748000]
[749000]
[750000]
[751000]
[752000]
[753000]
[754000]
[755000]
[756000]
[757000]
[758000]
[759000]
[760000]
[761000]
[762000]
[763000]
[764000]
[765000]
[766000]
[767000]
[768000]
[769000]
[770000]
[771000]
[772000]
[773000]
[774000]
[775000]
[776000]
[777000]
[778000]
[779000]
[780000]
[781000]
[782000]
[783000]
[784000]
[785000]
[786000]
[787000]
[788000]
[789000]
[790000]
[791000]
[792000]
[793000]
[794000]
[795000]
[796000]
[797000]
[798000]
[799000]
[800000]
[801000]
[802000]
[803000]
[804000]
[805000]
[806000]
[807000]
[808000]
[809000]
[810000]
[811000]
[812000]
[813000]
[814000]
[815000]
[816000]
[817000]
[818000]
[819000]
[820000]
[821000]
[822000]
[823000]
[824000]
[825000]
[826000]
[827000]
[828000]
[829000]
[830000]
[831000]
[832000]
[833000]
[834000]
[835000]
[836000]
[837000]
[838000]
[839000]
[840000]
[841000]
[842000]
[843000]
[844000]
[845000]
[846000]
[847000]
[848000]
[849000]
[850000]
[851000]
[852000]
[853000]
[854000]
[855000]
[856000]
[857000]
[858000]
[859000]
[860000]
[861000]
[862000]
[863000]
[864000]
[865000]
[866000]
[867000]
[868000]
[869000]
[870000]
[871000]
[872000]
[873000]
[874000]
[875000]
[876000]
[877000]
[878000]
[879000]
[880000]
[881000]
[882000]
[883000]
[884000]
[885000]
[886000]
[887000]
[888000]
[889000]
[890000]
[891000]
[892000]
[893000]
[894000]
[895000]
[896000]
[897000]
[898000]
[899000]
[900000]
[901000]
[902000]
[903000]
[904000]
[905000]
[906000]
[907000]
[908000]
[909000]
[910000]
[911000]
[912000]
[913000]
[914000]
[915000]
[916000]
[917000]
[918000]
[919000]
[920000]
[921000]
[922000]
[923000]
[924000]
[925000]
[926000]
[927000]
[928000]
[929000]
[930000]
[931000]
[932000]
[933000]
[934000]
[935000]
[936000]
[937000]
[938000]
[939000]
[940000] -fusion SPANNING read extraction for scaff: LIMA1--CAND1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000] -fusion SPANNING read extraction for scaff: MAP3K12--TPH2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000]
[217000]
[218000]
[219000]
[220000]
[221000]
[222000]
[223000]
[224000]
[225000]
[226000]
[227000]
[228000]
[229000]
[230000]
[231000]
[232000]
[233000]
[234000]
[235000]
[236000]
[237000]
[238000]
[239000]
[240000]
[241000]
[242000]
[243000]
[244000]
[245000]
[246000]
[247000]
[248000]
[249000]
[250000]
[251000]
[252000]
[253000]
[254000]
[255000]
[256000]
[257000]
[258000]
[259000]
[260000]
[261000]
[262000]
[263000]
[264000]
[265000]
[266000]
[267000]
[268000]
[269000]
[270000]
[271000]
[272000]
[273000]
[274000]
[275000]
[276000]
[277000]
[278000]
[279000]
[280000]
[281000]
[282000]
[283000]
[284000]
[285000]
[286000]
[287000]
[288000]
[289000]
[290000]
[291000]
[292000]
[293000]
[294000]
[295000]
[296000]
[297000]
[298000]
[299000]
[300000]
[301000]
[302000]
[303000]
[304000]
[305000]
[306000]
[307000]
[308000]
[309000]
[310000]
[311000]
[312000]
[313000]
[314000]
[315000]
[316000]
[317000]
[318000]
[319000]
[320000]
[321000]
[322000]
[323000]
[324000]
[325000]
[326000]
[327000]
[328000]
[329000]
[330000]
[331000]
[332000]
[333000]
[334000]
[335000]
[336000]
[337000]
[338000]
[339000]
[340000]
[341000]
[342000]
[343000]
[344000]
[345000]
[346000]
[347000]
[348000]
[349000]
[350000]
[351000]
[352000]
[353000]
[354000]
[355000]
[356000]
[357000]
[358000]
[359000]
[360000]
[361000]
[362000]
[363000]
[364000]
[365000]
[366000]
[367000]
[368000]
[369000]
[370000]
[371000]
[372000]
[373000]
[374000]
[375000]
[376000]
[377000]
[378000]
[379000]
[380000]
[381000]
[382000]
[383000]
[384000]
[385000]
[386000]
[387000]
[388000]
[389000]
[390000]
[391000]
[392000]
[393000]
[394000]
[395000]
[396000]
[397000]
[398000]
[399000]
[400000]
[401000]
[402000]
[403000]
[404000]
[405000]
[406000]
[407000]
[408000]
[409000]
[410000]
[411000]
[412000]
[413000]
[414000]
[415000]
[416000]
[417000]
[418000]
[419000]
[420000]
[421000]
[422000]
[423000]
[424000]
[425000]
[426000]
[427000]
[428000]
[429000]
[430000]
[431000]
[432000]
[433000]
[434000]
[435000]
[436000]
[437000]
[438000]
[439000]
[440000]
[441000]
[442000]
[443000]
[444000]
[445000]
[446000]
[447000]
[448000]
[449000]
[450000]
[451000]
[452000]
[453000]
[454000]
[455000]
[456000]
[457000]
[458000]
[459000]
[460000]
[461000]
[462000]
[463000]
[464000]
[465000]
[466000]
[467000]
[468000]
[469000]
[470000]
[471000]
[472000]
[473000]
[474000]
[475000]
[476000]
[477000]
[478000]
[479000]
[480000]
[481000]
[482000]
[483000]
[484000]
[485000]
[486000]
[487000]
[488000]
[489000]
[490000]
[491000]
[492000]
[493000]
[494000]
[495000]
[496000]
[497000]
[498000]
[499000]
[500000]
[501000]
[502000]
[503000]
[504000]
[505000]
[506000]
[507000]
[508000]
[509000]
[510000]
[511000]
[512000]
[513000]
[514000]
[515000]
[516000]
[517000]
[518000]
[519000]
[520000]
[521000]
[522000]
[523000]
[524000]
[525000]
[526000]
[527000]
[528000]
[529000]
[530000]
[531000]
[532000]
[533000]
[534000]
[535000]
[536000]
[537000]
[538000]
[539000]
[540000]
[541000]
[542000]
[543000]
[544000]
[545000]
[546000]
[547000]
[548000]
[549000]
[550000]
[551000]
[552000]
[553000]
[554000]
[555000]
[556000]
[557000]
[558000]
[559000]
[560000]
[561000]
[562000]
[563000]
[564000]
[565000]
[566000]
[567000]
[568000]
[569000]
[570000]
[571000]
[572000]
[573000]
[574000]
[575000]
[576000]
[577000]
[578000]
[579000]
[580000]
[581000]
[582000]
[583000]
[584000]
[585000]
[586000]
[587000]
[588000]
[589000]
[590000]
[591000]
[592000]
[593000]
[594000]
[595000]
[596000]
[597000]
[598000]
[599000]
[600000]
[601000]
[602000]
[603000]
[604000]
[605000]
[606000]
[607000]
[608000]
[609000]
[610000]
[611000]
[612000]
[613000]
[614000]
[615000]
[616000]
[617000]
[618000]
[619000]
[620000]
[621000]
[622000]
[623000]
[624000]
[625000]
[626000]
[627000]
[628000]
[629000]
[630000]
[631000]
[632000]
[633000]
[634000]
[635000]
[636000]
[637000]
[638000]
[639000]
[640000]
[641000]
[642000]
[643000]
[644000]
[645000]
[646000]
[647000]
[648000]
[649000]
[650000]
[651000]
[652000]
[653000]
[654000]
[655000]
[656000]
[657000]
[658000]
[659000]
[660000]
[661000]
[662000]
[663000]
[664000]
[665000]
[666000]
[667000]
[668000]
[669000]
[670000]
[671000]
[672000]
[673000]
[674000]
[675000]
[676000]
[677000]
[678000]
[679000]
[680000]
[681000]
[682000]
[683000]
[684000]
[685000]
[686000]
[687000]
[688000]
[689000]
[690000]
[691000]
[692000]
[693000]
[694000]
[695000]
[696000]
[697000]
[698000]
[699000]
[700000]
[701000]
[702000]
[703000]
[704000]
[705000]
[706000]
[707000]
[708000]
[709000]
[710000]
[711000]
[712000]
[713000]
[714000]
[715000]
[716000]
[717000]
[718000] -fusion SPANNING read extraction for scaff: MYH9--RBFOX2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000] -fusion SPANNING read extraction for scaff: MYO18A--CCL5
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000]
[217000]
[218000]
[219000]
[220000]
[221000]
[222000]
[223000]
[224000]
[225000]
[226000]
[227000]
[228000]
[229000]
[230000]
[231000]
[232000]
[233000]
[234000]
[235000]
[236000]
[237000]
[238000]
[239000]
[240000]
[241000]
[242000]
[243000]
[244000]
[245000]
[246000]
[247000]
[248000]
[249000]
[250000]
[251000]
[252000]
[253000]
[254000]
[255000]
[256000]
[257000]
[258000]
[259000]
[260000]
[261000]
[262000]
[263000]
[264000]
[265000]
[266000]
[267000]
[268000]
[269000]
[270000]
[271000]
[272000]
[273000]
[274000]
[275000]
[276000]
[277000]
[278000]
[279000]
[280000]
[281000]
[282000]
[283000]
[284000]
[285000]
[286000]
[287000]
[288000]
[289000]
[290000]
[291000]
[292000]
[293000]
[294000]
[295000]
[296000]
[297000]
[298000]
[299000]
[300000]
[301000]
[302000]
[303000]
[304000]
[305000]
[306000]
[307000]
[308000]
[309000]
[310000]
[311000]
[312000]
[313000]
[314000]
[315000]
[316000]
[317000]
[318000]
[319000]
[320000]
[321000]
[322000]
[323000]
[324000]
[325000]
[326000]
[327000]
[328000]
[329000]
[330000]
[331000]
[332000]
[333000]
[334000]
[335000]
[336000]
[337000]
[338000]
[339000]
[340000]
[341000]
[342000]
[343000]
[344000]
[345000]
[346000]
[347000]
[348000]
[349000]
[350000]
[351000]
[352000]
[353000]
[354000]
[355000]
[356000]
[357000]
[358000]
[359000]
[360000]
[361000]
[362000]
[363000]
[364000]
[365000]
[366000]
[367000]
[368000]
[369000]
[370000]
[371000]
[372000]
[373000]
[374000]
[375000]
[376000]
[377000]
[378000]
[379000]
[380000]
[381000]
[382000]
[383000]
[384000]
[385000]
[386000]
[387000]
[388000]
[389000]
[390000]
[391000]
[392000]
[393000]
[394000]
[395000]
[396000]
[397000]
[398000]
[399000]
[400000]
[401000]
[402000]
[403000]
[404000]
[405000]
[406000]
[407000]
[408000]
[409000]
[410000]
[411000]
[412000]
[413000]
[414000]
[415000]
[416000]
[417000]
[418000]
[419000]
[420000]
[421000]
[422000]
[423000]
[424000]
[425000]
[426000]
[427000]
[428000]
[429000]
[430000]
[431000]
[432000]
[433000]
[434000]
[435000]
[436000]
[437000]
[438000]
[439000]
[440000]
[441000]
[442000]
[443000]
[444000]
[445000]
[446000]
[447000]
[448000]
[449000]
[450000]
[451000]
[452000]
[453000]
[454000]
[455000]
[456000]
[457000]
[458000]
[459000]
[460000]
[461000]
[462000]
[463000]
[464000]
[465000]
[466000]
[467000]
[468000]
[469000]
[470000]
[471000]
[472000]
[473000]
[474000]
[475000]
[476000]
[477000]
[478000]
[479000]
[480000]
[481000]
[482000]
[483000]
[484000]
[485000]
[486000]
[487000]
[488000]
[489000]
[490000]
[491000]
[492000]
[493000]
[494000]
[495000]
[496000]
[497000]
[498000]
[499000]
[500000]
[501000]
[502000]
[503000]
[504000]
[505000]
[506000]
[507000]
[508000]
[509000]
[510000]
[511000]
[512000]
[513000]
[514000]
[515000]
[516000]
[517000]
[518000]
[519000]
[520000]
[521000]
[522000]
[523000]
[524000]
[525000]
[526000]
[527000]
[528000]
[529000]
[530000]
[531000]
[532000]
[533000]
[534000]
[535000]
[536000]
[537000]
[538000]
[539000]
[540000]
[541000]
[542000]
[543000]
[544000]
[545000]
[546000]
[547000]
[548000]
[549000]
[550000]
[551000]
[552000]
[553000]
[554000]
[555000]
[556000]
[557000]
[558000]
[559000]
[560000]
[561000]
[562000]
[563000]
[564000]
[565000]
[566000]
[567000]
[568000]
[569000]
[570000]
[571000]
[572000]
[573000]
[574000]
[575000]
[576000]
[577000]
[578000]
[579000]
[580000]
[581000]
[582000]
[583000]
[584000]
[585000]
[586000]
[587000]
[588000]
[589000]
[590000]
[591000]
[592000]
[593000]
[594000]
[595000]
[596000]
[597000]
[598000]
[599000]
[600000]
[601000]
[602000]
[603000]
[604000]
[605000]
[606000]
[607000]
[608000]
[609000]
[610000]
[611000]
[612000]
[613000]
[614000]
[615000]
[616000]
[617000]
[618000]
[619000]
[620000]
[621000]
[622000]
[623000]
[624000]
[625000]
[626000]
[627000]
[628000]
[629000]
[630000]
[631000]
[632000]
[633000]
[634000]
[635000]
[636000]
[637000]
[638000]
[639000]
[640000]
[641000]
[642000]
[643000]
[644000]
[645000]
[646000]
[647000]
[648000]
[649000]
[650000]
[651000]
[652000]
[653000]
[654000]
[655000]
[656000]
[657000]
[658000]
[659000]
[660000]
[661000]
[662000]
[663000]
[664000]
[665000]
[666000]
[667000]
[668000]
[669000]
[670000]
[671000]
[672000]
[673000]
[674000]
[675000]
[676000]
[677000]
[678000]
[679000]
[680000]
[681000]
[682000]
[683000]
[684000]
[685000]
[686000]
[687000]
[688000]
[689000]
[690000]
[691000]
[692000]
[693000]
[694000]
[695000]
[696000]
[697000]
[698000]
[699000]
[700000]
[701000] -fusion SPANNING read extraction for scaff: PCBP2--LINC02388
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC5
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC4
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA8
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA10
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA12
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB6
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB7
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA11
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA9
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC3
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000] -fusion SPANNING read extraction for scaff: PPM1H--ZNF641
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000] -fusion SPANNING read extraction for scaff: PPM1H--AC090115.1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000]
[217000]
[218000]
[219000]
[220000]
[221000]
[222000]
[223000]
[224000]
[225000]
[226000]
[227000]
[228000]
[229000]
[230000]
[231000]
[232000]
[233000]
[234000]
[235000]
[236000]
[237000]
[238000]
[239000]
[240000]
[241000]
[242000]
[243000]
[244000]
[245000]
[246000]
[247000]
[248000]
[249000]
[250000]
[251000]
[252000]
[253000]
[254000]
[255000]
[256000]
[257000]
[258000]
[259000]
[260000]
[261000]
[262000]
[263000]
[264000]
[265000]
[266000]
[267000]
[268000]
[269000]
[270000]
[271000]
[272000]
[273000]
[274000]
[275000]
[276000]
[277000]
[278000]
[279000]
[280000]
[281000]
[282000]
[283000]
[284000]
[285000]
[286000]
[287000]
[288000]
[289000]
[290000]
[291000]
[292000]
[293000]
[294000]
[295000]
[296000]
[297000]
[298000]
[299000]
[300000]
[301000]
[302000]
[303000]
[304000]
[305000]
[306000]
[307000]
[308000]
[309000]
[310000]
[311000]
[312000]
[313000]
[314000]
[315000]
[316000]
[317000]
[318000]
[319000]
[320000]
[321000]
[322000]
[323000]
[324000]
[325000]
[326000]
[327000]
[328000]
[329000]
[330000]
[331000]
[332000]
[333000]
[334000]
[335000]
[336000]
[337000]
[338000]
[339000]
[340000]
[341000]
[342000]
[343000]
[344000]
[345000]
[346000]
[347000]
[348000]
[349000]
[350000]
[351000]
[352000]
[353000]
[354000]
[355000]
[356000]
[357000]
[358000]
[359000]
[360000]
[361000]
[362000]
[363000]
[364000]
[365000]
[366000]
[367000]
[368000]
[369000]
[370000]
[371000]
[372000]
[373000]
[374000]
[375000]
[376000]
[377000]
[378000]
[379000]
[380000]
[381000]
[382000]
[383000]
[384000]
[385000]
[386000]
[387000]
[388000]
[389000]
[390000]
[391000]
[392000]
[393000]
[394000]
[395000]
[396000]
[397000]
[398000]
[399000]
[400000]
[401000]
[402000]
[403000]
[404000]
[405000]
[406000]
[407000]
[408000]
[409000]
[410000]
[411000]
[412000]
[413000]
[414000]
[415000]
[416000]
[417000]
[418000]
[419000]
[420000]
[421000]
[422000]
[423000]
[424000]
[425000]
[426000]
[427000]
[428000]
[429000]
[430000]
[431000]
[432000]
[433000]
[434000]
[435000]
[436000]
[437000]
[438000]
[439000]
[440000]
[441000]
[442000]
[443000]
[444000]
[445000]
[446000]
[447000]
[448000]
[449000]
[450000]
[451000]
[452000]
[453000]
[454000]
[455000]
[456000]
[457000]
[458000]
[459000]
[460000]
[461000]
[462000]
[463000]
[464000]
[465000]
[466000]
[467000]
[468000]
[469000]
[470000]
[471000]
[472000]
[473000]
[474000]
[475000]
[476000]
[477000]
[478000]
[479000]
[480000]
[481000]
[482000]
[483000]
[484000]
[485000]
[486000]
[487000]
[488000]
[489000]
[490000]
[491000]
[492000]
[493000]
[494000]
[495000]
[496000]
[497000]
[498000]
[499000]
[500000]
[501000]
[502000]
[503000]
[504000]
[505000]
[506000]
[507000]
[508000]
[509000]
[510000]
[511000]
[512000]
[513000]
[514000]
[515000]
[516000]
[517000]
[518000]
[519000]
[520000]
[521000]
[522000]
[523000]
[524000]
[525000]
[526000]
[527000]
[528000]
[529000]
[530000]
[531000]
[532000]
[533000]
[534000]
[535000]
[536000]
[537000]
[538000]
[539000]
[540000]
[541000]
[542000]
[543000]
[544000]
[545000]
[546000]
[547000]
[548000]
[549000]
[550000]
[551000]
[552000]
[553000]
[554000]
[555000]
[556000]
[557000]
[558000]
[559000]
[560000]
[561000]
[562000]
[563000]
[564000]
[565000]
[566000]
[567000]
[568000]
[569000]
[570000]
[571000]
[572000]
[573000]
[574000]
[575000]
[576000]
[577000]
[578000]
[579000]
[580000]
[581000]
[582000]
[583000]
[584000]
[585000]
[586000]
[587000]
[588000]
[589000]
[590000]
[591000]
[592000]
[593000]
[594000]
[595000]
[596000]
[597000]
[598000]
[599000]
[600000]
[601000]
[602000]
[603000]
[604000]
[605000]
[606000]
[607000]
[608000]
[609000]
[610000]
[611000]
[612000]
[613000]
[614000]
[615000]
[616000]
[617000]
[618000]
[619000]
[620000]
[621000]
[622000]
[623000]
[624000]
[625000]
[626000]
[627000]
[628000]
[629000]
[630000]
[631000]
[632000]
[633000]
[634000]
[635000]
[636000]
[637000]
[638000]
[639000]
[640000]
[641000]
[642000]
[643000]
[644000]
[645000]
[646000]
[647000]
[648000]
[649000]
[650000]
[651000]
[652000]
[653000]
[654000]
[655000]
[656000]
[657000]
[658000]
[659000]
[660000]
[661000]
[662000]
[663000]
[664000]
[665000]
[666000]
[667000]
[668000]
[669000]
[670000]
[671000]
[672000]
[673000]
[674000]
[675000]
[676000]
[677000]
[678000]
[679000]
[680000]
[681000]
[682000]
[683000]
[684000]
[685000]
[686000]
[687000]
[688000]
[689000]
[690000]
[691000]
[692000]
[693000]
[694000]
[695000]
[696000]
[697000]
[698000]
[699000]
[700000]
[701000]
[702000]
[703000]
[704000]
[705000]
[706000]
[707000]
[708000]
[709000]
[710000]
[711000]
[712000]
[713000]
[714000]
[715000]
[716000]
[717000]
[718000]
[719000]
[720000]
[721000]
[722000]
[723000]
[724000]
[725000]
[726000]
[727000]
[728000]
[729000]
[730000]
[731000]
[732000]
[733000]
[734000]
[735000]
[736000]
[737000]
[738000]
[739000]
[740000]
[741000]
[742000]
[743000]
[744000]
[745000]
[746000]
[747000]
[748000]
[749000]
[750000]
[751000]
[752000]
[753000]
[754000]
[755000]
[756000]
[757000]
[758000]
[759000]
[760000]
[761000]
[762000]
[763000]
[764000]
[765000]
[766000]
[767000]
[768000]
[769000]
[770000]
[771000]
[772000]
[773000]
[774000]
[775000]
[776000]
[777000]
[778000]
[779000]
[780000]
[781000]
[782000]
[783000]
[784000]
[785000]
[786000]
[787000]
[788000]
[789000]
[790000]
[791000]
[792000]
[793000]
[794000]
[795000]
[796000]
[797000]
[798000]
[799000]
[800000]
[801000]
[802000]
[803000]
[804000]
[805000]
[806000]
[807000]
[808000]
[809000]
[810000]
[811000]
[812000]
[813000]
[814000]
[815000]
[816000]
[817000]
[818000]
[819000]
[820000]
[821000]
[822000]
[823000]
[824000]
[825000]
[826000]
[827000]
[828000]
[829000]
[830000]
[831000]
[832000]
[833000]
[834000]
[835000]
[836000]
[837000]
[838000]
[839000]
[840000]
[841000]
[842000]
[843000]
[844000]
[845000]
[846000]
[847000]
[848000]
[849000]
[850000]
[851000]
[852000]
[853000]
[854000]
[855000]
[856000]
[857000]
[858000]
[859000]
[860000]
[861000]
[862000]
[863000]
[864000]
[865000]
[866000]
[867000]
[868000]
[869000]
[870000]
[871000]
[872000]
[873000]
[874000]
[875000]
[876000]
[877000]
[878000]
[879000]
[880000]
[881000]
[882000]
[883000]
[884000]
[885000]
[886000]
[887000]
[888000]
[889000]
[890000]
[891000]
[892000]
[893000]
[894000]
[895000]
[896000]
[897000] -fusion SPANNING read extraction for scaff: SRF--RELA
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000] -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000] -fusion SPANNING read extraction for scaff: TVP23C--CDRT4
-filtered reads reasons: $VAR1 = {
'seq similar region alignment' => 96313,
'lacks exon overlap' => 21810
};
Execution Time = 9.97 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/get_fusion_SPANNING_reads_from_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 1 > /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 1 > /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/coalesce_junc_n_span.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary > /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj
EM: Starting log likelihood: -12670.490584
EM: Round [1] log likelihood: -12670.482552
EM: Round [2] log likelihood: -12670.474600
EM: Round [3] log likelihood: -12670.466727
EM: Round [4] log likelihood: -12670.458931
EM: Round [5] log likelihood: -12670.451211
EM: Round [6] log likelihood: -12670.443566
EM: Round [7] log likelihood: -12670.435995
EM: Round [8] log likelihood: -12670.428495
EM: Round [9] log likelihood: -12670.421067
EM: Round [10] log likelihood: -12670.413708
EM: Round [11] log likelihood: -12670.406417
EM: Round [12] log likelihood: -12670.399195
EM: Round [13] log likelihood: -12670.392038
EM: Round [14] log likelihood: -12670.384947
EM: Round [15] log likelihood: -12670.377920
EM: Round [16] log likelihood: -12670.370956
EM: Round [17] log likelihood: -12670.364055
EM: Round [18] log likelihood: -12670.357214
EM: Round [19] log likelihood: -12670.350434
EM: Round [20] log likelihood: -12670.343713
EM: Round [21] log likelihood: -12670.337051
EM: Round [22] log likelihood: -12670.330446
EM: Round [23] log likelihood: -12670.323898
EM: Round [24] log likelihood: -12670.317405
EM: Round [25] log likelihood: -12670.310968
EM: Round [26] log likelihood: -12670.304585
EM: Round [27] log likelihood: -12670.298255
EM: Round [28] log likelihood: -12670.291978
EM: Round [29] log likelihood: -12670.285752
EM: Round [30] log likelihood: -12670.279578
EM: Round [31] log likelihood: -12670.273454
EM: Round [32] log likelihood: -12670.267379
EM: Round [33] log likelihood: -12670.261354
EM: Round [34] log likelihood: -12670.255377
EM: Round [35] log likelihood: -12670.249447
EM: Round [36] log likelihood: -12670.243564
EM: Round [37] log likelihood: -12670.237728
EM: Round [38] log likelihood: -12670.231937
EM: Round [39] log likelihood: -12670.226191
EM: Round [40] log likelihood: -12670.220490
EM: Round [41] log likelihood: -12670.214833
EM: Round [42] log likelihood: -12670.209218
EM: Round [43] log likelihood: -12670.203647
EM: Round [44] log likelihood: -12670.198117
EM: Round [45] log likelihood: -12670.192630
EM: Round [46] log likelihood: -12670.187183
EM: Round [47] log likelihood: -12670.181776
EM: Round [48] log likelihood: -12670.176410
EM: Round [49] log likelihood: -12670.171083
EM: Round [50] log likelihood: -12670.165795
EM: Round [51] log likelihood: -12670.160546
EM: Round [52] log likelihood: -12670.155335
EM: Round [53] log likelihood: -12670.150161
EM: Round [54] log likelihood: -12670.145024
EM: Round [55] log likelihood: -12670.139924
EM: Round [56] log likelihood: -12670.134860
EM: Round [57] log likelihood: -12670.129832
EM: Round [58] log likelihood: -12670.124840
EM: Round [59] log likelihood: -12670.119882
EM: Round [60] log likelihood: -12670.114958
EM: Round [61] log likelihood: -12670.110069
EM: Round [62] log likelihood: -12670.105213
EM: Round [63] log likelihood: -12670.100391
EM: Round [64] log likelihood: -12670.095601
EM: Round [65] log likelihood: -12670.090844
EM: Round [66] log likelihood: -12670.086120
EM: Round [67] log likelihood: -12670.081426
EM: Round [68] log likelihood: -12670.076765
EM: Round [69] log likelihood: -12670.072134
EM: Round [70] log likelihood: -12670.067534
EM: Round [71] log likelihood: -12670.062965
EM: Round [72] log likelihood: -12670.058425
EM: Round [73] log likelihood: -12670.053916
EM: Round [74] log likelihood: -12670.049435
EM: Round [75] log likelihood: -12670.044984
EM: Round [76] log likelihood: -12670.040561
EM: Round [77] log likelihood: -12670.036167
EM: Round [78] log likelihood: -12670.031801
EM: Round [79] log likelihood: -12670.027463
EM: Round [80] log likelihood: -12670.023152
EM: Round [81] log likelihood: -12670.018868
EM: Round [82] log likelihood: -12670.014612
EM: Round [83] log likelihood: -12670.010382
EM: Round [84] log likelihood: -12670.006178
EM: Round [85] log likelihood: -12670.002001
EM: Round [86] log likelihood: -12669.997849
EM: Round [87] log likelihood: -12669.993723
EM: Round [88] log likelihood: -12669.989622
EM: Round [89] log likelihood: -12669.985547
EM: Round [90] log likelihood: -12669.981496
EM: Round [91] log likelihood: -12669.977469
EM: Round [92] log likelihood: -12669.973467
EM: Round [93] log likelihood: -12669.969489
EM: Round [94] log likelihood: -12669.965535
EM: Round [95] log likelihood: -12669.961604
EM: Round [96] log likelihood: -12669.957697
EM: Round [97] log likelihood: -12669.953813
EM: Round [98] log likelihood: -12669.949952
EM: Round [99] log likelihood: -12669.946113
EM: Round [100] log likelihood: -12669.942297
EM: Round [101] log likelihood: -12669.938503
EM: Round [102] log likelihood: -12669.934731
EM: Round [103] log likelihood: -12669.930981
EM: Round [104] log likelihood: -12669.927253
EM: Round [105] log likelihood: -12669.923546
EM: Round [106] log likelihood: -12669.919860
EM: Round [107] log likelihood: -12669.916195
EM: Round [108] log likelihood: -12669.912551
EM: Round [109] log likelihood: -12669.908927
EM: Round [110] log likelihood: -12669.905324
EM: Round [111] log likelihood: -12669.901742
EM: Round [112] log likelihood: -12669.898179
EM: Round [113] log likelihood: -12669.894636
EM: Round [114] log likelihood: -12669.891113
EM: Round [115] log likelihood: -12669.887609
EM: Round [116] log likelihood: -12669.884125
EM: Round [117] log likelihood: -12669.880660
EM: Round [118] log likelihood: -12669.877213
EM: Round [119] log likelihood: -12669.873786
EM: Round [120] log likelihood: -12669.870377
EM: Round [121] log likelihood: -12669.866987
EM: Round [122] log likelihood: -12669.863615
EM: Round [123] log likelihood: -12669.860261
EM: Round [124] log likelihood: -12669.856926
EM: Round [125] log likelihood: -12669.853608
EM: Round [126] log likelihood: -12669.850307
EM: Round [127] log likelihood: -12669.847025
EM: Round [128] log likelihood: -12669.843760
EM: Round [129] log likelihood: -12669.840511
EM: Round [130] log likelihood: -12669.837281
EM: Round [131] log likelihood: -12669.834067
EM: Round [132] log likelihood: -12669.830869
EM: Round [133] log likelihood: -12669.827689
EM: Round [134] log likelihood: -12669.824525
EM: Round [135] log likelihood: -12669.821377
EM: Round [136] log likelihood: -12669.818246
EM: Round [137] log likelihood: -12669.815131
EM: Round [138] log likelihood: -12669.812032
EM: Round [139] log likelihood: -12669.808948
EM: Round [140] log likelihood: -12669.805881
EM: Round [141] log likelihood: -12669.802829
EM: Round [142] log likelihood: -12669.799792
EM: Round [143] log likelihood: -12669.796771
EM: Round [144] log likelihood: -12669.793765
EM: Round [145] log likelihood: -12669.790774
EM: Round [146] log likelihood: -12669.787798
EM: Round [147] log likelihood: -12669.784837
EM: Round [148] log likelihood: -12669.781891
EM: Round [149] log likelihood: -12669.778959
EM: Round [150] log likelihood: -12669.776042
EM: Round [151] log likelihood: -12669.773140
EM: Round [152] log likelihood: -12669.770251
EM: Round [153] log likelihood: -12669.767377
EM: Round [154] log likelihood: -12669.764517
EM: Round [155] log likelihood: -12669.761670
EM: Round [156] log likelihood: -12669.758838
EM: Round [157] log likelihood: -12669.756019
EM: Round [158] log likelihood: -12669.753214
EM: Round [159] log likelihood: -12669.750423
EM: Round [160] log likelihood: -12669.747645
EM: Round [161] log likelihood: -12669.744880
EM: Round [162] log likelihood: -12669.742129
EM: Round [163] log likelihood: -12669.739390
EM: Round [164] log likelihood: -12669.736665
EM: Round [165] log likelihood: -12669.733953
EM: Round [166] log likelihood: -12669.731253
EM: Round [167] log likelihood: -12669.728566
EM: Round [168] log likelihood: -12669.725892
EM: Round [169] log likelihood: -12669.723231
EM: Round [170] log likelihood: -12669.720582
EM: Round [171] log likelihood: -12669.717945
EM: Round [172] log likelihood: -12669.715320
EM: Round [173] log likelihood: -12669.712708
EM: Round [174] log likelihood: -12669.710108
EM: Round [175] log likelihood: -12669.707520
EM: Round [176] log likelihood: -12669.704944
EM: Round [177] log likelihood: -12669.702379
EM: Round [178] log likelihood: -12669.699827
EM: Round [179] log likelihood: -12669.697286
EM: Round [180] log likelihood: -12669.694756
EM: Round [181] log likelihood: -12669.692238
EM: Round [182] log likelihood: -12669.689732
EM: Round [183] log likelihood: -12669.687237
EM: Round [184] log likelihood: -12669.684753
EM: Round [185] log likelihood: -12669.682281
EM: Round [186] log likelihood: -12669.679819
EM: Round [187] log likelihood: -12669.677369
EM: Round [188] log likelihood: -12669.674929
EM: Round [189] log likelihood: -12669.672501
EM: Round [190] log likelihood: -12669.670083
EM: Round [191] log likelihood: -12669.667676
EM: Round [192] log likelihood: -12669.665280
EM: Round [193] log likelihood: -12669.662894
EM: Round [194] log likelihood: -12669.660519
EM: Round [195] log likelihood: -12669.658154
EM: Round [196] log likelihood: -12669.655799
EM: Round [197] log likelihood: -12669.653455
EM: Round [198] log likelihood: -12669.651122
EM: Round [199] log likelihood: -12669.648798
EM: Round [200] log likelihood: -12669.646484
EM: Round [201] log likelihood: -12669.644181
EM: Round [202] log likelihood: -12669.641887
EM: Round [203] log likelihood: -12669.639603
EM: Round [204] log likelihood: -12669.637330
EM: Round [205] log likelihood: -12669.635065
EM: Round [206] log likelihood: -12669.632811
EM: Round [207] log likelihood: -12669.630566
EM: Round [208] log likelihood: -12669.628331
EM: Round [209] log likelihood: -12669.626106
EM: Round [210] log likelihood: -12669.623890
EM: Round [211] log likelihood: -12669.621683
EM: Round [212] log likelihood: -12669.619485
EM: Round [213] log likelihood: -12669.617297
EM: Round [214] log likelihood: -12669.615118
EM: Round [215] log likelihood: -12669.612949
EM: Round [216] log likelihood: -12669.610788
EM: Round [217] log likelihood: -12669.608636
EM: Round [218] log likelihood: -12669.606494
EM: Round [219] log likelihood: -12669.604360
EM: Round [220] log likelihood: -12669.602235
EM: Round [221] log likelihood: -12669.600119
EM: Round [222] log likelihood: -12669.598012
EM: Round [223] log likelihood: -12669.595913
EM: Round [224] log likelihood: -12669.593824
EM: Round [225] log likelihood: -12669.591742
EM: Round [226] log likelihood: -12669.589670
EM: Round [227] log likelihood: -12669.587605
EM: Round [228] log likelihood: -12669.585550
EM: Round [229] log likelihood: -12669.583502
EM: Round [230] log likelihood: -12669.581463
EM: Round [231] log likelihood: -12669.579432
EM: Round [232] log likelihood: -12669.577410
EM: Round [233] log likelihood: -12669.575396
EM: Round [234] log likelihood: -12669.573389
EM: Round [235] log likelihood: -12669.571391
EM: Round [236] log likelihood: -12669.569401
EM: Round [237] log likelihood: -12669.567419
EM: Round [238] log likelihood: -12669.565445
EM: Round [239] log likelihood: -12669.563479
EM: Round [240] log likelihood: -12669.561520
EM: Round [241] log likelihood: -12669.559570
EM: Round [242] log likelihood: -12669.557627
EM: Round [243] log likelihood: -12669.555692
EM: Round [244] log likelihood: -12669.553765
EM: Round [245] log likelihood: -12669.551845
EM: Round [246] log likelihood: -12669.549933
EM: Round [247] log likelihood: -12669.548028
EM: Round [248] log likelihood: -12669.546131
EM: Round [249] log likelihood: -12669.544241
EM: Round [250] log likelihood: -12669.542359
EM: Round [251] log likelihood: -12669.540484
EM: Round [252] log likelihood: -12669.538616
EM: Round [253] log likelihood: -12669.536756
EM: Round [254] log likelihood: -12669.534902
EM: Round [255] log likelihood: -12669.533056
EM: Round [256] log likelihood: -12669.531218
EM: Round [257] log likelihood: -12669.529386
EM: Round [258] log likelihood: -12669.527561
EM: Round [259] log likelihood: -12669.525744
EM: Round [260] log likelihood: -12669.523933
EM: Round [261] log likelihood: -12669.522129
EM: Round [262] log likelihood: -12669.520332
EM: Round [263] log likelihood: -12669.518543
EM: Round [264] log likelihood: -12669.516760
EM: Round [265] log likelihood: -12669.514983
EM: Round [266] log likelihood: -12669.513214
EM: Round [267] log likelihood: -12669.511451
EM: Round [268] log likelihood: -12669.509695
EM: Round [269] log likelihood: -12669.507945
EM: Round [270] log likelihood: -12669.506203
EM: Round [271] log likelihood: -12669.504466
EM: Round [272] log likelihood: -12669.502737
EM: Round [273] log likelihood: -12669.501013
EM: Round [274] log likelihood: -12669.499296
EM: Round [275] log likelihood: -12669.497586
EM: Round [276] log likelihood: -12669.495882
EM: Round [277] log likelihood: -12669.494185
EM: Round [278] log likelihood: -12669.492493
EM: Round [279] log likelihood: -12669.490808
EM: Round [280] log likelihood: -12669.489130
EM: Round [281] log likelihood: -12669.487457
EM: Round [282] log likelihood: -12669.485791
EM: Round [283] log likelihood: -12669.484131
EM: Round [284] log likelihood: -12669.482477
EM: Round [285] log likelihood: -12669.480829
EM: Round [286] log likelihood: -12669.479187
EM: Round [287] log likelihood: -12669.477551
EM: Round [288] log likelihood: -12669.475921
EM: Round [289] log likelihood: -12669.474297
EM: Round [290] log likelihood: -12669.472679
EM: Round [291] log likelihood: -12669.471067
EM: Round [292] log likelihood: -12669.469461
EM: Round [293] log likelihood: -12669.467861
EM: Round [294] log likelihood: -12669.466266
EM: Round [295] log likelihood: -12669.464677
EM: Round [296] log likelihood: -12669.463094
EM: Round [297] log likelihood: -12669.461517
EM: Round [298] log likelihood: -12669.459946
EM: Round [299] log likelihood: -12669.458380
EM: Round [300] log likelihood: -12669.456819
EM: Round [301] log likelihood: -12669.455265
EM: Round [302] log likelihood: -12669.453715
EM: Round [303] log likelihood: -12669.452172
EM: Round [304] log likelihood: -12669.450634
EM: Round [305] log likelihood: -12669.449101
EM: Round [306] log likelihood: -12669.447574
EM: Round [307] log likelihood: -12669.446052
EM: Round [308] log likelihood: -12669.444536
EM: Round [309] log likelihood: -12669.443025
EM: Round [310] log likelihood: -12669.441520
EM: Round [311] log likelihood: -12669.440019
EM: Round [312] log likelihood: -12669.438524
EM: Round [313] log likelihood: -12669.437035
EM: Round [314] log likelihood: -12669.435550
EM: Round [315] log likelihood: -12669.434071
EM: Round [316] log likelihood: -12669.432597
EM: Round [317] log likelihood: -12669.431128
EM: Round [318] log likelihood: -12669.429664
EM: Round [319] log likelihood: -12669.428206
EM: Round [320] log likelihood: -12669.426752
EM: Round [321] log likelihood: -12669.425304
EM: Round [322] log likelihood: -12669.423860
EM: Round [323] log likelihood: -12669.422422
EM: Round [324] log likelihood: -12669.420989
EM: Round [325] log likelihood: -12669.419560
EM: Round [326] log likelihood: -12669.418137
EM: Round [327] log likelihood: -12669.416718
EM: Round [328] log likelihood: -12669.415304
EM: Round [329] log likelihood: -12669.413895
EM: Round [330] log likelihood: -12669.412491
EM: Round [331] log likelihood: -12669.411092
EM: Round [332] log likelihood: -12669.409698
EM: Round [333] log likelihood: -12669.408308
EM: Round [334] log likelihood: -12669.406923
EM: Round [335] log likelihood: -12669.405543
EM: Round [336] log likelihood: -12669.404168
EM: Round [337] log likelihood: -12669.402797
EM: Round [338] log likelihood: -12669.401431
EM: Round [339] log likelihood: -12669.400070
EM: Round [340] log likelihood: -12669.398713
EM: Round [341] log likelihood: -12669.397361
EM: Round [342] log likelihood: -12669.396013
EM: Round [343] log likelihood: -12669.394670
EM: Round [344] log likelihood: -12669.393332
EM: Round [345] log likelihood: -12669.391997
EM: Round [346] log likelihood: -12669.390668
EM: Round [347] log likelihood: -12669.389343
EM: Round [348] log likelihood: -12669.388022
EM: Round [349] log likelihood: -12669.386706
EM: Round [350] log likelihood: -12669.385394
EM: Round [351] log likelihood: -12669.384087
EM: Round [352] log likelihood: -12669.382784
EM: Round [353] log likelihood: -12669.381485
EM: Round [354] log likelihood: -12669.380191
EM: Round [355] log likelihood: -12669.378901
EM: Round [356] log likelihood: -12669.377615
EM: Round [357] log likelihood: -12669.376333
EM: Round [358] log likelihood: -12669.375056
EM: Round [359] log likelihood: -12669.373783
EM: Round [360] log likelihood: -12669.372514
EM: Round [361] log likelihood: -12669.371249
EM: Round [362] log likelihood: -12669.369989
EM: Round [363] log likelihood: -12669.368733
EM: Round [364] log likelihood: -12669.367480
EM: Round [365] log likelihood: -12669.366232
EM: Round [366] log likelihood: -12669.364988
EM: Round [367] log likelihood: -12669.363748
EM: Round [368] log likelihood: -12669.362512
EM: Round [369] log likelihood: -12669.361281
EM: Round [370] log likelihood: -12669.360053
EM: Round [371] log likelihood: -12669.358829
EM: Round [372] log likelihood: -12669.357609
EM: Round [373] log likelihood: -12669.356393
EM: Round [374] log likelihood: -12669.355181
EM: Round [375] log likelihood: -12669.353973
EM: Round [376] log likelihood: -12669.352769
EM: Round [377] log likelihood: -12669.351569
EM: Round [378] log likelihood: -12669.350373
EM: Round [379] log likelihood: -12669.349180
EM: Round [380] log likelihood: -12669.347992
EM: Round [381] log likelihood: -12669.346807
EM: Round [382] log likelihood: -12669.345626
EM: Round [383] log likelihood: -12669.344449
EM: Round [384] log likelihood: -12669.343275
EM: Round [385] log likelihood: -12669.342106
EM: Round [386] log likelihood: -12669.340940
EM: Round [387] log likelihood: -12669.339778
EM: Round [388] log likelihood: -12669.338619
EM: Round [389] log likelihood: -12669.337465
EM: Round [390] log likelihood: -12669.336314
EM: Round [391] log likelihood: -12669.335166
EM: Round [392] log likelihood: -12669.334022
EM: Round [393] log likelihood: -12669.332882
EM: Round [394] log likelihood: -12669.331746
EM: Round [395] log likelihood: -12669.330613
EM: Round [396] log likelihood: -12669.329483
EM: Round [397] log likelihood: -12669.328358
EM: Round [398] log likelihood: -12669.327236
EM: Round [399] log likelihood: -12669.326117
EM: Round [400] log likelihood: -12669.325002
EM: Round [401] log likelihood: -12669.323890
EM: Round [402] log likelihood: -12669.322782
EM: Round [403] log likelihood: -12669.321677
EM: Round [404] log likelihood: -12669.320576
EM: Round [405] log likelihood: -12669.319478
EM: Round [406] log likelihood: -12669.318384
EM: Round [407] log likelihood: -12669.317293
EM: Round [408] log likelihood: -12669.316206
EM: Round [409] log likelihood: -12669.315122
EM: Round [410] log likelihood: -12669.314041
EM: Round [411] log likelihood: -12669.312964
EM: Round [412] log likelihood: -12669.311890
EM: Round [413] log likelihood: -12669.310819
EM: Round [414] log likelihood: -12669.309752
EM: Round [415] log likelihood: -12669.308688
EM: Round [416] log likelihood: -12669.307627
EM: Round [417] log likelihood: -12669.306570
EM: Round [418] log likelihood: -12669.305515
EM: Round [419] log likelihood: -12669.304464
EM: Round [420] log likelihood: -12669.303417
EM: Round [421] log likelihood: -12669.302372
EM: Round [422] log likelihood: -12669.301331
EM: Round [423] log likelihood: -12669.300293
EM: Round [424] log likelihood: -12669.299258
EM: Round [425] log likelihood: -12669.298227
EM: Round [426] log likelihood: -12669.297198
EM: Round [427] log likelihood: -12669.296173
EM: Round [428] log likelihood: -12669.295150
EM: Round [429] log likelihood: -12669.294131
EM: Round [430] log likelihood: -12669.293115
EM: Round [431] log likelihood: -12669.292102
EM: Round [432] log likelihood: -12669.291093
EM: Round [433] log likelihood: -12669.290086
EM: Round [434] log likelihood: -12669.289082
EM: Round [435] log likelihood: -12669.288081
EM: Round [436] log likelihood: -12669.287084
EM: Round [437] log likelihood: -12669.286089
EM: Round [438] log likelihood: -12669.285098
EM: Round [439] log likelihood: -12669.284109
EM: Round [440] log likelihood: -12669.283124
EM: Round [441] log likelihood: -12669.282141
EM: Round [442] log likelihood: -12669.281161
EM: Round [443] log likelihood: -12669.280185
EM: Round [444] log likelihood: -12669.279211
EM: Round [445] log likelihood: -12669.278240
EM: Round [446] log likelihood: -12669.277272
EM: Round [447] log likelihood: -12669.276307
EM: Round [448] log likelihood: -12669.275345
EM: Round [449] log likelihood: -12669.274386
EM: Round [450] log likelihood: -12669.273429
EM: Round [451] log likelihood: -12669.272476
EM: Round [452] log likelihood: -12669.271525
EM: Round [453] log likelihood: -12669.270577
EM: Round [454] log likelihood: -12669.269632
EM: Round [455] log likelihood: -12669.268690
EM: Round [456] log likelihood: -12669.267751
EM: Round [457] log likelihood: -12669.266814
EM: Round [458] log likelihood: -12669.265880
EM: Round [459] log likelihood: -12669.264949
EM: Round [460] log likelihood: -12669.264021
EM: Round [461] log likelihood: -12669.263096
EM: Round [462] log likelihood: -12669.262173
EM: Round [463] log likelihood: -12669.261253
EM: Round [464] log likelihood: -12669.260335
EM: Round [465] log likelihood: -12669.259421
EM: Round [466] log likelihood: -12669.258509
EM: Round [467] log likelihood: -12669.257600
EM: Round [468] log likelihood: -12669.256693
EM: Round [469] log likelihood: -12669.255789
EM: Round [470] log likelihood: -12669.254888
EM: Round [471] log likelihood: -12669.253989
EM: Round [472] log likelihood: -12669.253093
EM: Round [473] log likelihood: -12669.252200
EM: Round [474] log likelihood: -12669.251309
EM: Round [475] log likelihood: -12669.250421
EM: Round [476] log likelihood: -12669.249535
EM: Round [477] log likelihood: -12669.248652
EM: Round [478] log likelihood: -12669.247772
EM: Round [479] log likelihood: -12669.246894
EM: Round [480] log likelihood: -12669.246019
EM: Round [481] log likelihood: -12669.245146
EM: Round [482] log likelihood: -12669.244276
EM: Round [483] log likelihood: -12669.243408
EM: Round [484] log likelihood: -12669.242543
EM: Round [485] log likelihood: -12669.241681
EM: Round [486] log likelihood: -12669.240821
EM: Round [487] log likelihood: -12669.239963
EM: Round [488] log likelihood: -12669.239108
EM: Round [489] log likelihood: -12669.238255
EM: Round [490] log likelihood: -12669.237405
EM: Round [491] log likelihood: -12669.236557
EM: Round [492] log likelihood: -12669.235712
EM: Round [493] log likelihood: -12669.234869
EM: Round [494] log likelihood: -12669.234028
EM: Round [495] log likelihood: -12669.233190
EM: Round [496] log likelihood: -12669.232355
EM: Round [497] log likelihood: -12669.231521
EM: Round [498] log likelihood: -12669.230690
EM: Round [499] log likelihood: -12669.229862
EM: Round [500] log likelihood: -12669.229036
EM: Round [501] log likelihood: -12669.228212
EM: Round [502] log likelihood: -12669.227391
EM: Round [503] log likelihood: -12669.226572
EM: Round [504] log likelihood: -12669.225755
EM: Round [505] log likelihood: -12669.224940
EM: Round [506] log likelihood: -12669.224128
EM: Round [507] log likelihood: -12669.223319
EM: Round [508] log likelihood: -12669.222511
EM: Round [509] log likelihood: -12669.221706
EM: Round [510] log likelihood: -12669.220903
EM: Round [511] log likelihood: -12669.220102
EM: Round [512] log likelihood: -12669.219304
EM: Round [513] log likelihood: -12669.218508
EM: Round [514] log likelihood: -12669.217714
EM: Round [515] log likelihood: -12669.216923
EM: Round [516] log likelihood: -12669.216133
EM: Round [517] log likelihood: -12669.215346
EM: Round [518] log likelihood: -12669.214561
EM: Round [519] log likelihood: -12669.213779
EM: Round [520] log likelihood: -12669.212998
EM: Round [521] log likelihood: -12669.212220
EM: Round [522] log likelihood: -12669.211444
EM: Round [523] log likelihood: -12669.210670
EM: Round [524] log likelihood: -12669.209898
EM: Round [525] log likelihood: -12669.209129
EM: Round [526] log likelihood: -12669.208361
EM: Round [527] log likelihood: -12669.207596
EM: Round [528] log likelihood: -12669.206833
EM: Round [529] log likelihood: -12669.206072
EM: Round [530] log likelihood: -12669.205313
EM: Round [531] log likelihood: -12669.204556
EM: Round [532] log likelihood: -12669.203801
EM: Round [533] log likelihood: -12669.203049
EM: Round [534] log likelihood: -12669.202299
EM: Round [535] log likelihood: -12669.201550
EM: Round [536] log likelihood: -12669.200804
EM: Round [537] log likelihood: -12669.200060
EM: Round [538] log likelihood: -12669.199318
EM: Round [539] log likelihood: -12669.198578
EM: Round [540] log likelihood: -12669.197840
EM: Round [541] log likelihood: -12669.197104
EM: Round [542] log likelihood: -12669.196370
EM: Round [543] log likelihood: -12669.195638
EM: Round [544] log likelihood: -12669.194908
EM: Round [545] log likelihood: -12669.194180
EM: Round [546] log likelihood: -12669.193454
EM: Round [547] log likelihood: -12669.192730
EM: Round [548] log likelihood: -12669.192009
EM: Round [549] log likelihood: -12669.191289
EM: Round [550] log likelihood: -12669.190571
EM: Round [551] log likelihood: -12669.189855
EM: Round [552] log likelihood: -12669.189141
EM: Round [553] log likelihood: -12669.188429
EM: Round [554] log likelihood: -12669.187719
EM: Round [555] log likelihood: -12669.187011
EM: Round [556] log likelihood: -12669.186305
EM: Round [557] log likelihood: -12669.185601
EM: Round [558] log likelihood: -12669.184898
EM: Round [559] log likelihood: -12669.184198
EM: Round [560] log likelihood: -12669.183500
EM: Round [561] log likelihood: -12669.182803
EM: Round [562] log likelihood: -12669.182109
EM: Round [563] log likelihood: -12669.181416
EM: Round [564] log likelihood: -12669.180725
EM: Round [565] log likelihood: -12669.180036
EM: Round [566] log likelihood: -12669.179349
EM: Round [567] log likelihood: -12669.178664
EM: Round [568] log likelihood: -12669.177980
EM: Round [569] log likelihood: -12669.177299
EM: Round [570] log likelihood: -12669.176619
EM: Round [571] log likelihood: -12669.175942
EM: Round [572] log likelihood: -12669.175266
EM: Round [573] log likelihood: -12669.174591
EM: Round [574] log likelihood: -12669.173919
EM: Round [575] log likelihood: -12669.173249
EM: Round [576] log likelihood: -12669.172580
EM: Round [577] log likelihood: -12669.171913
EM: Round [578] log likelihood: -12669.171248
EM: Round [579] log likelihood: -12669.170585
EM: Round [580] log likelihood: -12669.169923
EM: Round [581] log likelihood: -12669.169264
EM: Round [582] log likelihood: -12669.168606
EM: Round [583] log likelihood: -12669.167950
EM: Round [584] log likelihood: -12669.167295
EM: Round [585] log likelihood: -12669.166643
EM: Round [586] log likelihood: -12669.165992
EM: Round [587] log likelihood: -12669.165343
EM: Round [588] log likelihood: -12669.164695
EM: Round [589] log likelihood: -12669.164050
EM: Round [590] log likelihood: -12669.163406
EM: Round [591] log likelihood: -12669.162764
EM: Round [592] log likelihood: -12669.162123
EM: Round [593] log likelihood: -12669.161485
EM: Round [594] log likelihood: -12669.160848
EM: Round [595] log likelihood: -12669.160212
EM: Round [596] log likelihood: -12669.159579
EM: Round [597] log likelihood: -12669.158947
EM: Round [598] log likelihood: -12669.158316
EM: Round [599] log likelihood: -12669.157688
EM: Round [600] log likelihood: -12669.157061
EM: Round [601] log likelihood: -12669.156436
EM: Round [602] log likelihood: -12669.155812
EM: Round [603] log likelihood: -12669.155190
EM: Round [604] log likelihood: -12669.154570
EM: Round [605] log likelihood: -12669.153951
EM: Round [606] log likelihood: -12669.153334
EM: Round [607] log likelihood: -12669.152719
EM: Round [608] log likelihood: -12669.152105
EM: Round [609] log likelihood: -12669.151493
EM: Round [610] log likelihood: -12669.150883
EM: Round [611] log likelihood: -12669.150274
EM: Round [612] log likelihood: -12669.149667
EM: Round [613] log likelihood: -12669.149061
EM: Round [614] log likelihood: -12669.148457
EM: Round [615] log likelihood: -12669.147855
EM: Round [616] log likelihood: -12669.147254
EM: Round [617] log likelihood: -12669.146654
EM: Round [618] log likelihood: -12669.146057
EM: Round [619] log likelihood: -12669.145461
EM: Round [620] log likelihood: -12669.144866
EM: Round [621] log likelihood: -12669.144273
EM: Round [622] log likelihood: -12669.143682
EM: Round [623] log likelihood: -12669.143092
EM: Round [624] log likelihood: -12669.142503
EM: Round [625] log likelihood: -12669.141917
EM: Round [626] log likelihood: -12669.141331
EM: Round [627] log likelihood: -12669.140748
EM: Round [628] log likelihood: -12669.140165
EM: Round [629] log likelihood: -12669.139585
EM: Round [630] log likelihood: -12669.139006
EM: Round [631] log likelihood: -12669.138428
EM: Round [632] log likelihood: -12669.137852
EM: Round [633] log likelihood: -12669.137277
EM: Round [634] log likelihood: -12669.136704
EM: Round [635] log likelihood: -12669.136133
EM: Round [636] log likelihood: -12669.135562
EM: Round [637] log likelihood: -12669.134994
EM: Round [638] log likelihood: -12669.134427
EM: Round [639] log likelihood: -12669.133861
EM: Round [640] log likelihood: -12669.133297
EM: Round [641] log likelihood: -12669.132734
EM: Round [642] log likelihood: -12669.132173
EM: Round [643] log likelihood: -12669.131613
EM: Round [644] log likelihood: -12669.131054
EM: Round [645] log likelihood: -12669.130497
EM: Round [646] log likelihood: -12669.129942
EM: Round [647] log likelihood: -12669.129388
EM: Round [648] log likelihood: -12669.128835
EM: Round [649] log likelihood: -12669.128284
EM: Round [650] log likelihood: -12669.127734
EM: Round [651] log likelihood: -12669.127186
EM: Round [652] log likelihood: -12669.126639
EM: Round [653] log likelihood: -12669.126094
EM: Round [654] log likelihood: -12669.125549
EM: Round [655] log likelihood: -12669.125007
EM: Round [656] log likelihood: -12669.124465
EM: Round [657] log likelihood: -12669.123925
EM: Round [658] log likelihood: -12669.123387
EM: Round [659] log likelihood: -12669.122850
EM: Round [660] log likelihood: -12669.122314
EM: Round [661] log likelihood: -12669.121780
EM: Round [662] log likelihood: -12669.121247
EM: Round [663] log likelihood: -12669.120715
EM: Round [664] log likelihood: -12669.120185
EM: Round [665] log likelihood: -12669.119656
EM: Round [666] log likelihood: -12669.119128
EM: Round [667] log likelihood: -12669.118602
EM: Round [668] log likelihood: -12669.118077
EM: Round [669] log likelihood: -12669.117554
EM: Round [670] log likelihood: -12669.117032
EM: Round [671] log likelihood: -12669.116511
EM: Round [672] log likelihood: -12669.115991
EM: Round [673] log likelihood: -12669.115473
EM: Round [674] log likelihood: -12669.114956
EM: Round [675] log likelihood: -12669.114441
EM: Round [676] log likelihood: -12669.113926
EM: Round [677] log likelihood: -12669.113413
EM: Round [678] log likelihood: -12669.112902
EM: Round [679] log likelihood: -12669.112392
EM: Round [680] log likelihood: -12669.111883
EM: Round [681] log likelihood: -12669.111375
EM: Round [682] log likelihood: -12669.110868
EM: Round [683] log likelihood: -12669.110363
EM: Round [684] log likelihood: -12669.109859
EM: Round [685] log likelihood: -12669.109357
EM: Round [686] log likelihood: -12669.108856
EM: Round [687] log likelihood: -12669.108356
EM: Round [688] log likelihood: -12669.107857
EM: Round [689] log likelihood: -12669.107359
EM: Round [690] log likelihood: -12669.106863
EM: Round [691] log likelihood: -12669.106368
EM: Round [692] log likelihood: -12669.105874
EM: Round [693] log likelihood: -12669.105382
EM: Round [694] log likelihood: -12669.104891
EM: Round [695] log likelihood: -12669.104401
EM: Round [696] log likelihood: -12669.103912
EM: Round [697] log likelihood: -12669.103424
EM: Round [698] log likelihood: -12669.102938
EM: Round [699] log likelihood: -12669.102453
EM: Round [700] log likelihood: -12669.101969
EM: Round [701] log likelihood: -12669.101487
EM: Round [702] log likelihood: -12669.101005
EM: Round [703] log likelihood: -12669.100525
EM: Round [704] log likelihood: -12669.100046
EM: Round [705] log likelihood: -12669.099568
EM: Round [706] log likelihood: -12669.099092
EM: Round [707] log likelihood: -12669.098616
EM: Round [708] log likelihood: -12669.098142
EM: Round [709] log likelihood: -12669.097669
EM: Round [710] log likelihood: -12669.097197
EM: Round [711] log likelihood: -12669.096727
EM: Round [712] log likelihood: -12669.096257
EM: Round [713] log likelihood: -12669.095789
EM: Round [714] log likelihood: -12669.095322
EM: Round [715] log likelihood: -12669.094856
EM: Round [716] log likelihood: -12669.094391
EM: Round [717] log likelihood: -12669.093927
EM: Round [718] log likelihood: -12669.093465
EM: Round [719] log likelihood: -12669.093004
EM: Round [720] log likelihood: -12669.092544
EM: Round [721] log likelihood: -12669.092085
EM: Round [722] log likelihood: -12669.091627
EM: Round [723] log likelihood: -12669.091170
EM: Round [724] log likelihood: -12669.090714
EM: Round [725] log likelihood: -12669.090260
EM: Round [726] log likelihood: -12669.089807
EM: Round [727] log likelihood: -12669.089354
EM: Round [728] log likelihood: -12669.088903
EM: Round [729] log likelihood: -12669.088453
EM: Round [730] log likelihood: -12669.088005
EM: Round [731] log likelihood: -12669.087557
EM: Round [732] log likelihood: -12669.087110
EM: Round [733] log likelihood: -12669.086665
EM: Round [734] log likelihood: -12669.086220
EM: Round [735] log likelihood: -12669.085777
EM: Round [736] log likelihood: -12669.085335
EM: Round [737] log likelihood: -12669.084894
EM: Round [738] log likelihood: -12669.084454
EM: Round [739] log likelihood: -12669.084015
EM: Round [740] log likelihood: -12669.083577
EM: Round [741] log likelihood: -12669.083141
EM: Round [742] log likelihood: -12669.082705
EM: Round [743] log likelihood: -12669.082270
EM: Round [744] log likelihood: -12669.081837
EM: Round [745] log likelihood: -12669.081404
EM: Round [746] log likelihood: -12669.080973
EM: Round [747] log likelihood: -12669.080543
EM: Round [748] log likelihood: -12669.080113
EM: Round [749] log likelihood: -12669.079685
EM: Round [750] log likelihood: -12669.079258
EM: Round [751] log likelihood: -12669.078832
EM: Round [752] log likelihood: -12669.078407
EM: Round [753] log likelihood: -12669.077983
EM: Round [754] log likelihood: -12669.077560
EM: Round [755] log likelihood: -12669.077138
EM: Round [756] log likelihood: -12669.076717
EM: Round [757] log likelihood: -12669.076298
EM: Round [758] log likelihood: -12669.075879
EM: Round [759] log likelihood: -12669.075461
EM: Round [760] log likelihood: -12669.075044
EM: Round [761] log likelihood: -12669.074628
EM: Round [762] log likelihood: -12669.074214
EM: Round [763] log likelihood: -12669.073800
EM: Round [764] log likelihood: -12669.073387
EM: Round [765] log likelihood: -12669.072976
EM: Round [766] log likelihood: -12669.072565
EM: Round [767] log likelihood: -12669.072155
EM: Round [768] log likelihood: -12669.071747
EM: Round [769] log likelihood: -12669.071339
EM: Round [770] log likelihood: -12669.070932
EM: Round [771] log likelihood: -12669.070527
EM: Round [772] log likelihood: -12669.070122
EM: Round [773] log likelihood: -12669.069718
EM: Round [774] log likelihood: -12669.069316
EM: Round [775] log likelihood: -12669.068914
EM: Round [776] log likelihood: -12669.068513
EM: Round [777] log likelihood: -12669.068114
EM: Round [778] log likelihood: -12669.067715
EM: Round [779] log likelihood: -12669.067317
EM: Round [780] log likelihood: -12669.066920
EM: Round [781] log likelihood: -12669.066524
EM: Round [782] log likelihood: -12669.066129
EM: Round [783] log likelihood: -12669.065735
EM: Round [784] log likelihood: -12669.065342
EM: Round [785] log likelihood: -12669.064950
EM: Round [786] log likelihood: -12669.064559
EM: Round [787] log likelihood: -12669.064169
EM: Round [788] log likelihood: -12669.063780
EM: Round [789] log likelihood: -12669.063391
EM: Round [790] log likelihood: -12669.063004
EM: Round [791] log likelihood: -12669.062618
EM: Round [792] log likelihood: -12669.062232
EM: Round [793] log likelihood: -12669.061848
EM: Round [794] log likelihood: -12669.061464
EM: Round [795] log likelihood: -12669.061082
EM: Round [796] log likelihood: -12669.060700
EM: Round [797] log likelihood: -12669.060319
EM: Round [798] log likelihood: -12669.059939
EM: Round [799] log likelihood: -12669.059560
EM: Round [800] log likelihood: -12669.059182
EM: Round [801] log likelihood: -12669.058805
EM: Round [802] log likelihood: -12669.058429
EM: Round [803] log likelihood: -12669.058053
EM: Round [804] log likelihood: -12669.057679
EM: Round [805] log likelihood: -12669.057305
EM: Round [806] log likelihood: -12669.056933
EM: Round [807] log likelihood: -12669.056561
EM: Round [808] log likelihood: -12669.056190
EM: Round [809] log likelihood: -12669.055820
EM: Round [810] log likelihood: -12669.055451
EM: Round [811] log likelihood: -12669.055083
EM: Round [812] log likelihood: -12669.054716
EM: Round [813] log likelihood: -12669.054349
EM: Round [814] log likelihood: -12669.053984
EM: Round [815] log likelihood: -12669.053619
EM: Round [816] log likelihood: -12669.053256
EM: Round [817] log likelihood: -12669.052893
EM: Round [818] log likelihood: -12669.052531
EM: Round [819] log likelihood: -12669.052170
EM: Round [820] log likelihood: -12669.051809
EM: Round [821] log likelihood: -12669.051450
EM: Round [822] log likelihood: -12669.051091
EM: Round [823] log likelihood: -12669.050734
EM: Round [824] log likelihood: -12669.050377
EM: Round [825] log likelihood: -12669.050021
EM: Round [826] log likelihood: -12669.049666
EM: Round [827] log likelihood: -12669.049311
EM: Round [828] log likelihood: -12669.048958
EM: Round [829] log likelihood: -12669.048605
EM: Round [830] log likelihood: -12669.048253
EM: Round [831] log likelihood: -12669.047903
EM: Round [832] log likelihood: -12669.047552
EM: Round [833] log likelihood: -12669.047203
EM: Round [834] log likelihood: -12669.046855
EM: Round [835] log likelihood: -12669.046507
EM: Round [836] log likelihood: -12669.046161
EM: Round [837] log likelihood: -12669.045815
EM: Round [838] log likelihood: -12669.045469
EM: Round [839] log likelihood: -12669.045125
EM: Round [840] log likelihood: -12669.044782
EM: Round [841] log likelihood: -12669.044439
EM: Round [842] log likelihood: -12669.044097
EM: Round [843] log likelihood: -12669.043756
EM: Round [844] log likelihood: -12669.043416
EM: Round [845] log likelihood: -12669.043077
EM: Round [846] log likelihood: -12669.042738
EM: Round [847] log likelihood: -12669.042400
EM: Round [848] log likelihood: -12669.042063
EM: Round [849] log likelihood: -12669.041727
EM: Round [850] log likelihood: -12669.041392
EM: Round [851] log likelihood: -12669.041057
EM: Round [852] log likelihood: -12669.040723
EM: Round [853] log likelihood: -12669.040390
EM: Round [854] log likelihood: -12669.040058
EM: Round [855] log likelihood: -12669.039727
EM: Round [856] log likelihood: -12669.039396
EM: Round [857] log likelihood: -12669.039066
EM: Round [858] log likelihood: -12669.038737
EM: Round [859] log likelihood: -12669.038409
EM: Round [860] log likelihood: -12669.038081
EM: Round [861] log likelihood: -12669.037754
EM: Round [862] log likelihood: -12669.037428
EM: Round [863] log likelihood: -12669.037103
EM: Round [864] log likelihood: -12669.036779
EM: Round [865] log likelihood: -12669.036455
EM: Round [866] log likelihood: -12669.036132
EM: Round [867] log likelihood: -12669.035810
EM: Round [868] log likelihood: -12669.035489
EM: Round [869] log likelihood: -12669.035168
EM: Round [870] log likelihood: -12669.034848
EM: Round [871] log likelihood: -12669.034529
EM: Round [872] log likelihood: -12669.034211
EM: Round [873] log likelihood: -12669.033893
EM: Round [874] log likelihood: -12669.033576
EM: Round [875] log likelihood: -12669.033260
EM: Round [876] log likelihood: -12669.032944
EM: Round [877] log likelihood: -12669.032630
EM: Round [878] log likelihood: -12669.032316
EM: Round [879] log likelihood: -12669.032003
EM: Round [880] log likelihood: -12669.031690
EM: Round [881] log likelihood: -12669.031379
EM: Round [882] log likelihood: -12669.031068
EM: Round [883] log likelihood: -12669.030757
EM: Round [884] log likelihood: -12669.030448
EM: Round [885] log likelihood: -12669.030139
EM: Round [886] log likelihood: -12669.029831
EM: Round [887] log likelihood: -12669.029524
EM: Round [888] log likelihood: -12669.029217
EM: Round [889] log likelihood: -12669.028911
EM: Round [890] log likelihood: -12669.028606
EM: Round [891] log likelihood: -12669.028301
EM: Round [892] log likelihood: -12669.027998
EM: Round [893] log likelihood: -12669.027695
EM: Round [894] log likelihood: -12669.027392
EM: Round [895] log likelihood: -12669.027091
EM: Round [896] log likelihood: -12669.026790
EM: Round [897] log likelihood: -12669.026489
EM: Round [898] log likelihood: -12669.026190
EM: Round [899] log likelihood: -12669.025891
EM: Round [900] log likelihood: -12669.025593
EM: Round [901] log likelihood: -12669.025295
EM: Round [902] log likelihood: -12669.024999
EM: Round [903] log likelihood: -12669.024703
EM: Round [904] log likelihood: -12669.024407
EM: Round [905] log likelihood: -12669.024113
EM: Round [906] log likelihood: -12669.023819
EM: Round [907] log likelihood: -12669.023525
EM: Round [908] log likelihood: -12669.023233
EM: Round [909] log likelihood: -12669.022941
EM: Round [910] log likelihood: -12669.022650
EM: Round [911] log likelihood: -12669.022359
EM: Round [912] log likelihood: -12669.022069
EM: Round [913] log likelihood: -12669.021780
EM: Round [914] log likelihood: -12669.021491
EM: Round [915] log likelihood: -12669.021203
EM: Round [916] log likelihood: -12669.020916
EM: Round [917] log likelihood: -12669.020630
EM: Round [918] log likelihood: -12669.020344
EM: Round [919] log likelihood: -12669.020059
EM: Round [920] log likelihood: -12669.019774
EM: Round [921] log likelihood: -12669.019490
EM: Round [922] log likelihood: -12669.019207
EM: Round [923] log likelihood: -12669.018924
EM: Round [924] log likelihood: -12669.018642
EM: Round [925] log likelihood: -12669.018361
EM: Round [926] log likelihood: -12669.018080
EM: Round [927] log likelihood: -12669.017800
EM: Round [928] log likelihood: -12669.017521
EM: Round [929] log likelihood: -12669.017242
EM: Round [930] log likelihood: -12669.016964
EM: Round [931] log likelihood: -12669.016687
EM: Round [932] log likelihood: -12669.016410
EM: Round [933] log likelihood: -12669.016134
EM: Round [934] log likelihood: -12669.015859
EM: Round [935] log likelihood: -12669.015584
EM: Round [936] log likelihood: -12669.015310
EM: Round [937] log likelihood: -12669.015036
EM: Round [938] log likelihood: -12669.014763
EM: Round [939] log likelihood: -12669.014491
EM: Round [940] log likelihood: -12669.014219
EM: Round [941] log likelihood: -12669.013948
EM: Round [942] log likelihood: -12669.013678
EM: Round [943] log likelihood: -12669.013408
EM: Round [944] log likelihood: -12669.013139
EM: Round [945] log likelihood: -12669.012870
EM: Round [946] log likelihood: -12669.012602
EM: Round [947] log likelihood: -12669.012335
EM: Round [948] log likelihood: -12669.012068
EM: Round [949] log likelihood: -12669.011802
EM: Round [950] log likelihood: -12669.011537
EM: Round [951] log likelihood: -12669.011272
EM: Round [952] log likelihood: -12669.011008
EM: Round [953] log likelihood: -12669.010744
EM: Round [954] log likelihood: -12669.010481
EM: Round [955] log likelihood: -12669.010218
EM: Round [956] log likelihood: -12669.009957
EM: Round [957] log likelihood: -12669.009695
EM: Round [958] log likelihood: -12669.009435
EM: Round [959] log likelihood: -12669.009175
EM: Round [960] log likelihood: -12669.008915
EM: Round [961] log likelihood: -12669.008656
EM: Round [962] log likelihood: -12669.008398
EM: Round [963] log likelihood: -12669.008140
EM: Round [964] log likelihood: -12669.007883
EM: Round [965] log likelihood: -12669.007627
EM: Round [966] log likelihood: -12669.007371
EM: Round [967] log likelihood: -12669.007116
EM: Round [968] log likelihood: -12669.006861
EM: Round [969] log likelihood: -12669.006607
EM: Round [970] log likelihood: -12669.006353
EM: Round [971] log likelihood: -12669.006100
EM: Round [972] log likelihood: -12669.005848
EM: Round [973] log likelihood: -12669.005596
EM: Round [974] log likelihood: -12669.005345
EM: Round [975] log likelihood: -12669.005094
EM: Round [976] log likelihood: -12669.004844
EM: Round [977] log likelihood: -12669.004595
EM: Round [978] log likelihood: -12669.004346
EM: Round [979] log likelihood: -12669.004097
EM: Round [980] log likelihood: -12669.003849
EM: Round [981] log likelihood: -12669.003602
EM: Round [982] log likelihood: -12669.003356
EM: Round [983] log likelihood: -12669.003109
EM: Round [984] log likelihood: -12669.002864
EM: Round [985] log likelihood: -12669.002619
EM: Round [986] log likelihood: -12669.002374
EM: Round [987] log likelihood: -12669.002131
EM: Round [988] log likelihood: -12669.001887
EM: Round [989] log likelihood: -12669.001644
EM: Round [990] log likelihood: -12669.001402
EM: Round [991] log likelihood: -12669.001161
EM: Round [992] log likelihood: -12669.000919
EM: Round [993] log likelihood: -12669.000679
EM: Round [994] log likelihood: -12669.000439
EM: Round [995] log likelihood: -12669.000199
EM: Round [996] log likelihood: -12668.999960
EM: Round [997] log likelihood: -12668.999722
EM: Round [998] log likelihood: -12668.999484
EM: Round [999] log likelihood: -12668.999247
EM: Round [1000] log likelihood: -12668.999010
EM: Round [1001] log likelihood: -12668.998774
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary > /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/init_EM_adj_counts.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/filter_by_frag_threshs.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads > /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads > /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/prep_igv_extract_junc_reads.ok
Running: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam"
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
Execution Time = 0.00 minutes. CMD: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam"
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/prep_igv_junc_reads_bam.ok
Running: samtools index /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam
Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/samtools_idx_junc_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bed
Execution Time = 0.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bed
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bam_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bed > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bed > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bedsort.ok
Running: bgzip -f /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bgzip.ok
Running: tabix -p bed /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bed.sorted.bed.gz
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.tabix.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags > /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags > /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/span_reads_acc.ok
Running: samtools view -H /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam
Execution Time = 0.00 minutes. CMD: samtools view -H /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/init_spanning_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam || :
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam || :
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/prep_spanning_reads.ok
Running: samtools index /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam
Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/samtools_index_span_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bed
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bam_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bed > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bed > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bedsort.ok
Running: bgzip -f /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bgzip.ok
Running: tabix -p bed /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bed.sorted.bed.gz
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.tabix.ok
Running: cp /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/cp_consol_bam.ok
Running: samtools index /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam
Execution Time = 0.06 minutes. CMD: samtools index /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/index_consol_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam --max_insert_size 10000000
-extracting read coordinates from /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam into /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam.read_coords
CMD: touch /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam.read_coords > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam.frag_coords > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam.frag_coords.coord_sorted
Execution Time = 1.76 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam --max_insert_size 10000000
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/prep_igv_sam_frag_coordss.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam.frag_coords > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.igv.FusionJuncSpan
Execution Time = 0.03 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam.frag_coords > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.igv.FusionJuncSpan
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/prep_igv_juncspan_fmt.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.igv.Pfam.gff3
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.igv.Pfam.gff3
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/prep_igv_pfam_gff3.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.igv.Pfam.gff3 > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.igv.Pfam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.igv.Pfam.gff3 > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.igv.Pfam.bed
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/prep_igv_pfam_bed.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.igv.seqsimilar.gff3
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.igv.seqsimilar.gff3
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/prep_igv_seqsim_gff3.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.igv.seqsimilar.gff3 > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.igv.seqsimilar.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.igv.seqsimilar.gff3 > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.igv.seqsimilar.bed
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/prep_igv_seqsim_bed.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fa > /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fa > /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/add_splice_info.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl --fusion_preds /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: cp /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl --fusion_preds /tmp/nxf.n5ewjTXfr6/fi_workdir/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/blast_filter.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.n5ewjTXfr6/ctat_genome_lib_build_dir
-done, see /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.n5ewjTXfr6/ctat_genome_lib_build_dir
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/annot_filter.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj
EM: Starting log likelihood: -11920.169842
EM: Round [1] log likelihood: -11920.155912
EM: Round [2] log likelihood: -11920.142201
EM: Round [3] log likelihood: -11920.128703
EM: Round [4] log likelihood: -11920.115411
EM: Round [5] log likelihood: -11920.102321
EM: Round [6] log likelihood: -11920.089426
EM: Round [7] log likelihood: -11920.076720
EM: Round [8] log likelihood: -11920.064200
EM: Round [9] log likelihood: -11920.051859
EM: Round [10] log likelihood: -11920.039694
EM: Round [11] log likelihood: -11920.027699
EM: Round [12] log likelihood: -11920.015870
EM: Round [13] log likelihood: -11920.004203
EM: Round [14] log likelihood: -11919.992694
EM: Round [15] log likelihood: -11919.981339
EM: Round [16] log likelihood: -11919.970134
EM: Round [17] log likelihood: -11919.959076
EM: Round [18] log likelihood: -11919.948161
EM: Round [19] log likelihood: -11919.937386
EM: Round [20] log likelihood: -11919.926747
EM: Round [21] log likelihood: -11919.916242
EM: Round [22] log likelihood: -11919.905866
EM: Round [23] log likelihood: -11919.895619
EM: Round [24] log likelihood: -11919.885495
EM: Round [25] log likelihood: -11919.875494
EM: Round [26] log likelihood: -11919.865611
EM: Round [27] log likelihood: -11919.855845
EM: Round [28] log likelihood: -11919.846193
EM: Round [29] log likelihood: -11919.836653
EM: Round [30] log likelihood: -11919.827222
EM: Round [31] log likelihood: -11919.817898
EM: Round [32] log likelihood: -11919.808679
EM: Round [33] log likelihood: -11919.799563
EM: Round [34] log likelihood: -11919.790547
EM: Round [35] log likelihood: -11919.781630
EM: Round [36] log likelihood: -11919.772810
EM: Round [37] log likelihood: -11919.764085
EM: Round [38] log likelihood: -11919.755452
EM: Round [39] log likelihood: -11919.746911
EM: Round [40] log likelihood: -11919.738460
EM: Round [41] log likelihood: -11919.730096
EM: Round [42] log likelihood: -11919.721818
EM: Round [43] log likelihood: -11919.713625
EM: Round [44] log likelihood: -11919.705515
EM: Round [45] log likelihood: -11919.697487
EM: Round [46] log likelihood: -11919.689539
EM: Round [47] log likelihood: -11919.681669
EM: Round [48] log likelihood: -11919.673877
EM: Round [49] log likelihood: -11919.666161
EM: Round [50] log likelihood: -11919.658519
EM: Round [51] log likelihood: -11919.650951
EM: Round [52] log likelihood: -11919.643454
EM: Round [53] log likelihood: -11919.636029
EM: Round [54] log likelihood: -11919.628673
EM: Round [55] log likelihood: -11919.621386
EM: Round [56] log likelihood: -11919.614166
EM: Round [57] log likelihood: -11919.607013
EM: Round [58] log likelihood: -11919.599924
EM: Round [59] log likelihood: -11919.592900
EM: Round [60] log likelihood: -11919.585939
EM: Round [61] log likelihood: -11919.579040
EM: Round [62] log likelihood: -11919.572203
EM: Round [63] log likelihood: -11919.565425
EM: Round [64] log likelihood: -11919.558707
EM: Round [65] log likelihood: -11919.552048
EM: Round [66] log likelihood: -11919.545445
EM: Round [67] log likelihood: -11919.538900
EM: Round [68] log likelihood: -11919.532410
EM: Round [69] log likelihood: -11919.525975
EM: Round [70] log likelihood: -11919.519594
EM: Round [71] log likelihood: -11919.513267
EM: Round [72] log likelihood: -11919.506992
EM: Round [73] log likelihood: -11919.500768
EM: Round [74] log likelihood: -11919.494596
EM: Round [75] log likelihood: -11919.488475
EM: Round [76] log likelihood: -11919.482402
EM: Round [77] log likelihood: -11919.476379
EM: Round [78] log likelihood: -11919.470404
EM: Round [79] log likelihood: -11919.464477
EM: Round [80] log likelihood: -11919.458596
EM: Round [81] log likelihood: -11919.452762
EM: Round [82] log likelihood: -11919.446973
EM: Round [83] log likelihood: -11919.441229
EM: Round [84] log likelihood: -11919.435530
EM: Round [85] log likelihood: -11919.429874
EM: Round [86] log likelihood: -11919.424262
EM: Round [87] log likelihood: -11919.418692
EM: Round [88] log likelihood: -11919.413165
EM: Round [89] log likelihood: -11919.407679
EM: Round [90] log likelihood: -11919.402234
EM: Round [91] log likelihood: -11919.396829
EM: Round [92] log likelihood: -11919.391465
EM: Round [93] log likelihood: -11919.386140
EM: Round [94] log likelihood: -11919.380854
EM: Round [95] log likelihood: -11919.375606
EM: Round [96] log likelihood: -11919.370397
EM: Round [97] log likelihood: -11919.365225
EM: Round [98] log likelihood: -11919.360090
EM: Round [99] log likelihood: -11919.354991
EM: Round [100] log likelihood: -11919.349929
EM: Round [101] log likelihood: -11919.344902
EM: Round [102] log likelihood: -11919.339911
EM: Round [103] log likelihood: -11919.334955
EM: Round [104] log likelihood: -11919.330033
EM: Round [105] log likelihood: -11919.325145
EM: Round [106] log likelihood: -11919.320291
EM: Round [107] log likelihood: -11919.315470
EM: Round [108] log likelihood: -11919.310682
EM: Round [109] log likelihood: -11919.305927
EM: Round [110] log likelihood: -11919.301203
EM: Round [111] log likelihood: -11919.296512
EM: Round [112] log likelihood: -11919.291851
EM: Round [113] log likelihood: -11919.287222
EM: Round [114] log likelihood: -11919.282624
EM: Round [115] log likelihood: -11919.278056
EM: Round [116] log likelihood: -11919.273517
EM: Round [117] log likelihood: -11919.269009
EM: Round [118] log likelihood: -11919.264530
EM: Round [119] log likelihood: -11919.260080
EM: Round [120] log likelihood: -11919.255658
EM: Round [121] log likelihood: -11919.251266
EM: Round [122] log likelihood: -11919.246901
EM: Round [123] log likelihood: -11919.242564
EM: Round [124] log likelihood: -11919.238254
EM: Round [125] log likelihood: -11919.233972
EM: Round [126] log likelihood: -11919.229716
EM: Round [127] log likelihood: -11919.225488
EM: Round [128] log likelihood: -11919.221285
EM: Round [129] log likelihood: -11919.217109
EM: Round [130] log likelihood: -11919.212959
EM: Round [131] log likelihood: -11919.208834
EM: Round [132] log likelihood: -11919.204734
EM: Round [133] log likelihood: -11919.200659
EM: Round [134] log likelihood: -11919.196610
EM: Round [135] log likelihood: -11919.192584
EM: Round [136] log likelihood: -11919.188583
EM: Round [137] log likelihood: -11919.184606
EM: Round [138] log likelihood: -11919.180653
EM: Round [139] log likelihood: -11919.176724
EM: Round [140] log likelihood: -11919.172818
EM: Round [141] log likelihood: -11919.168934
EM: Round [142] log likelihood: -11919.165074
EM: Round [143] log likelihood: -11919.161237
EM: Round [144] log likelihood: -11919.157422
EM: Round [145] log likelihood: -11919.153629
EM: Round [146] log likelihood: -11919.149858
EM: Round [147] log likelihood: -11919.146109
EM: Round [148] log likelihood: -11919.142381
EM: Round [149] log likelihood: -11919.138675
EM: Round [150] log likelihood: -11919.134990
EM: Round [151] log likelihood: -11919.131326
EM: Round [152] log likelihood: -11919.127683
EM: Round [153] log likelihood: -11919.124061
EM: Round [154] log likelihood: -11919.120459
EM: Round [155] log likelihood: -11919.116877
EM: Round [156] log likelihood: -11919.113315
EM: Round [157] log likelihood: -11919.109773
EM: Round [158] log likelihood: -11919.106251
EM: Round [159] log likelihood: -11919.102748
EM: Round [160] log likelihood: -11919.099264
EM: Round [161] log likelihood: -11919.095800
EM: Round [162] log likelihood: -11919.092355
EM: Round [163] log likelihood: -11919.088928
EM: Round [164] log likelihood: -11919.085520
EM: Round [165] log likelihood: -11919.082131
EM: Round [166] log likelihood: -11919.078760
EM: Round [167] log likelihood: -11919.075407
EM: Round [168] log likelihood: -11919.072072
EM: Round [169] log likelihood: -11919.068755
EM: Round [170] log likelihood: -11919.065455
EM: Round [171] log likelihood: -11919.062173
EM: Round [172] log likelihood: -11919.058909
EM: Round [173] log likelihood: -11919.055662
EM: Round [174] log likelihood: -11919.052432
EM: Round [175] log likelihood: -11919.049218
EM: Round [176] log likelihood: -11919.046022
EM: Round [177] log likelihood: -11919.042842
EM: Round [178] log likelihood: -11919.039679
EM: Round [179] log likelihood: -11919.036532
EM: Round [180] log likelihood: -11919.033402
EM: Round [181] log likelihood: -11919.030287
EM: Round [182] log likelihood: -11919.027189
EM: Round [183] log likelihood: -11919.024106
EM: Round [184] log likelihood: -11919.021039
EM: Round [185] log likelihood: -11919.017988
EM: Round [186] log likelihood: -11919.014952
EM: Round [187] log likelihood: -11919.011931
EM: Round [188] log likelihood: -11919.008926
EM: Round [189] log likelihood: -11919.005936
EM: Round [190] log likelihood: -11919.002961
EM: Round [191] log likelihood: -11919.000000
EM: Round [192] log likelihood: -11918.997055
EM: Round [193] log likelihood: -11918.994124
EM: Round [194] log likelihood: -11918.991207
EM: Round [195] log likelihood: -11918.988305
EM: Round [196] log likelihood: -11918.985418
EM: Round [197] log likelihood: -11918.982544
EM: Round [198] log likelihood: -11918.979684
EM: Round [199] log likelihood: -11918.976839
EM: Round [200] log likelihood: -11918.974007
EM: Round [201] log likelihood: -11918.971189
EM: Round [202] log likelihood: -11918.968385
EM: Round [203] log likelihood: -11918.965594
EM: Round [204] log likelihood: -11918.962816
EM: Round [205] log likelihood: -11918.960052
EM: Round [206] log likelihood: -11918.957301
EM: Round [207] log likelihood: -11918.954564
EM: Round [208] log likelihood: -11918.951839
EM: Round [209] log likelihood: -11918.949127
EM: Round [210] log likelihood: -11918.946428
EM: Round [211] log likelihood: -11918.943742
EM: Round [212] log likelihood: -11918.941068
EM: Round [213] log likelihood: -11918.938407
EM: Round [214] log likelihood: -11918.935759
EM: Round [215] log likelihood: -11918.933123
EM: Round [216] log likelihood: -11918.930499
EM: Round [217] log likelihood: -11918.927887
EM: Round [218] log likelihood: -11918.925287
EM: Round [219] log likelihood: -11918.922700
EM: Round [220] log likelihood: -11918.920124
EM: Round [221] log likelihood: -11918.917560
EM: Round [222] log likelihood: -11918.915008
EM: Round [223] log likelihood: -11918.912468
EM: Round [224] log likelihood: -11918.909939
EM: Round [225] log likelihood: -11918.907422
EM: Round [226] log likelihood: -11918.904916
EM: Round [227] log likelihood: -11918.902421
EM: Round [228] log likelihood: -11918.899938
EM: Round [229] log likelihood: -11918.897466
EM: Round [230] log likelihood: -11918.895005
EM: Round [231] log likelihood: -11918.892555
EM: Round [232] log likelihood: -11918.890116
EM: Round [233] log likelihood: -11918.887688
EM: Round [234] log likelihood: -11918.885271
EM: Round [235] log likelihood: -11918.882864
EM: Round [236] log likelihood: -11918.880468
EM: Round [237] log likelihood: -11918.878083
EM: Round [238] log likelihood: -11918.875708
EM: Round [239] log likelihood: -11918.873344
EM: Round [240] log likelihood: -11918.870990
EM: Round [241] log likelihood: -11918.868646
EM: Round [242] log likelihood: -11918.866313
EM: Round [243] log likelihood: -11918.863990
EM: Round [244] log likelihood: -11918.861677
EM: Round [245] log likelihood: -11918.859373
EM: Round [246] log likelihood: -11918.857080
EM: Round [247] log likelihood: -11918.854797
EM: Round [248] log likelihood: -11918.852524
EM: Round [249] log likelihood: -11918.850260
EM: Round [250] log likelihood: -11918.848006
EM: Round [251] log likelihood: -11918.845762
EM: Round [252] log likelihood: -11918.843527
EM: Round [253] log likelihood: -11918.841302
EM: Round [254] log likelihood: -11918.839086
EM: Round [255] log likelihood: -11918.836880
EM: Round [256] log likelihood: -11918.834683
EM: Round [257] log likelihood: -11918.832495
EM: Round [258] log likelihood: -11918.830317
EM: Round [259] log likelihood: -11918.828147
EM: Round [260] log likelihood: -11918.825987
EM: Round [261] log likelihood: -11918.823836
EM: Round [262] log likelihood: -11918.821694
EM: Round [263] log likelihood: -11918.819560
EM: Round [264] log likelihood: -11918.817436
EM: Round [265] log likelihood: -11918.815320
EM: Round [266] log likelihood: -11918.813214
EM: Round [267] log likelihood: -11918.811115
EM: Round [268] log likelihood: -11918.809026
EM: Round [269] log likelihood: -11918.806945
EM: Round [270] log likelihood: -11918.804873
EM: Round [271] log likelihood: -11918.802809
EM: Round [272] log likelihood: -11918.800754
EM: Round [273] log likelihood: -11918.798707
EM: Round [274] log likelihood: -11918.796668
EM: Round [275] log likelihood: -11918.794637
EM: Round [276] log likelihood: -11918.792615
EM: Round [277] log likelihood: -11918.790601
EM: Round [278] log likelihood: -11918.788596
EM: Round [279] log likelihood: -11918.786598
EM: Round [280] log likelihood: -11918.784608
EM: Round [281] log likelihood: -11918.782626
EM: Round [282] log likelihood: -11918.780653
EM: Round [283] log likelihood: -11918.778687
EM: Round [284] log likelihood: -11918.776729
EM: Round [285] log likelihood: -11918.774779
EM: Round [286] log likelihood: -11918.772836
EM: Round [287] log likelihood: -11918.770901
EM: Round [288] log likelihood: -11918.768974
EM: Round [289] log likelihood: -11918.767055
EM: Round [290] log likelihood: -11918.765143
EM: Round [291] log likelihood: -11918.763239
EM: Round [292] log likelihood: -11918.761342
EM: Round [293] log likelihood: -11918.759452
EM: Round [294] log likelihood: -11918.757570
EM: Round [295] log likelihood: -11918.755696
EM: Round [296] log likelihood: -11918.753828
EM: Round [297] log likelihood: -11918.751968
EM: Round [298] log likelihood: -11918.750115
EM: Round [299] log likelihood: -11918.748270
EM: Round [300] log likelihood: -11918.746431
EM: Round [301] log likelihood: -11918.744600
EM: Round [302] log likelihood: -11918.742776
EM: Round [303] log likelihood: -11918.740958
EM: Round [304] log likelihood: -11918.739148
EM: Round [305] log likelihood: -11918.737345
EM: Round [306] log likelihood: -11918.735548
EM: Round [307] log likelihood: -11918.733758
EM: Round [308] log likelihood: -11918.731976
EM: Round [309] log likelihood: -11918.730200
EM: Round [310] log likelihood: -11918.728431
EM: Round [311] log likelihood: -11918.726668
EM: Round [312] log likelihood: -11918.724912
EM: Round [313] log likelihood: -11918.723163
EM: Round [314] log likelihood: -11918.721421
EM: Round [315] log likelihood: -11918.719685
EM: Round [316] log likelihood: -11918.717955
EM: Round [317] log likelihood: -11918.716232
EM: Round [318] log likelihood: -11918.714516
EM: Round [319] log likelihood: -11918.712806
EM: Round [320] log likelihood: -11918.711102
EM: Round [321] log likelihood: -11918.709405
EM: Round [322] log likelihood: -11918.707714
EM: Round [323] log likelihood: -11918.706029
EM: Round [324] log likelihood: -11918.704351
EM: Round [325] log likelihood: -11918.702678
EM: Round [326] log likelihood: -11918.701012
EM: Round [327] log likelihood: -11918.699352
EM: Round [328] log likelihood: -11918.697699
EM: Round [329] log likelihood: -11918.696051
EM: Round [330] log likelihood: -11918.694409
EM: Round [331] log likelihood: -11918.692774
EM: Round [332] log likelihood: -11918.691144
EM: Round [333] log likelihood: -11918.689521
EM: Round [334] log likelihood: -11918.687903
EM: Round [335] log likelihood: -11918.686291
EM: Round [336] log likelihood: -11918.684685
EM: Round [337] log likelihood: -11918.683085
EM: Round [338] log likelihood: -11918.681491
EM: Round [339] log likelihood: -11918.679902
EM: Round [340] log likelihood: -11918.678320
EM: Round [341] log likelihood: -11918.676743
EM: Round [342] log likelihood: -11918.675171
EM: Round [343] log likelihood: -11918.673606
EM: Round [344] log likelihood: -11918.672046
EM: Round [345] log likelihood: -11918.670491
EM: Round [346] log likelihood: -11918.668942
EM: Round [347] log likelihood: -11918.667399
EM: Round [348] log likelihood: -11918.665861
EM: Round [349] log likelihood: -11918.664329
EM: Round [350] log likelihood: -11918.662802
EM: Round [351] log likelihood: -11918.661280
EM: Round [352] log likelihood: -11918.659764
EM: Round [353] log likelihood: -11918.658254
EM: Round [354] log likelihood: -11918.656748
EM: Round [355] log likelihood: -11918.655248
EM: Round [356] log likelihood: -11918.653754
EM: Round [357] log likelihood: -11918.652264
EM: Round [358] log likelihood: -11918.650780
EM: Round [359] log likelihood: -11918.649301
EM: Round [360] log likelihood: -11918.647827
EM: Round [361] log likelihood: -11918.646359
EM: Round [362] log likelihood: -11918.644895
EM: Round [363] log likelihood: -11918.643437
EM: Round [364] log likelihood: -11918.641983
EM: Round [365] log likelihood: -11918.640535
EM: Round [366] log likelihood: -11918.639092
EM: Round [367] log likelihood: -11918.637654
EM: Round [368] log likelihood: -11918.636221
EM: Round [369] log likelihood: -11918.634792
EM: Round [370] log likelihood: -11918.633369
EM: Round [371] log likelihood: -11918.631951
EM: Round [372] log likelihood: -11918.630537
EM: Round [373] log likelihood: -11918.629129
EM: Round [374] log likelihood: -11918.627725
EM: Round [375] log likelihood: -11918.626326
EM: Round [376] log likelihood: -11918.624932
EM: Round [377] log likelihood: -11918.623542
EM: Round [378] log likelihood: -11918.622158
EM: Round [379] log likelihood: -11918.620778
EM: Round [380] log likelihood: -11918.619403
EM: Round [381] log likelihood: -11918.618032
EM: Round [382] log likelihood: -11918.616666
EM: Round [383] log likelihood: -11918.615305
EM: Round [384] log likelihood: -11918.613948
EM: Round [385] log likelihood: -11918.612596
EM: Round [386] log likelihood: -11918.611249
EM: Round [387] log likelihood: -11918.609906
EM: Round [388] log likelihood: -11918.608568
EM: Round [389] log likelihood: -11918.607234
EM: Round [390] log likelihood: -11918.605905
EM: Round [391] log likelihood: -11918.604580
EM: Round [392] log likelihood: -11918.603259
EM: Round [393] log likelihood: -11918.601943
EM: Round [394] log likelihood: -11918.600632
EM: Round [395] log likelihood: -11918.599324
EM: Round [396] log likelihood: -11918.598022
EM: Round [397] log likelihood: -11918.596723
EM: Round [398] log likelihood: -11918.595429
EM: Round [399] log likelihood: -11918.594139
EM: Round [400] log likelihood: -11918.592853
EM: Round [401] log likelihood: -11918.591572
EM: Round [402] log likelihood: -11918.590295
EM: Round [403] log likelihood: -11918.589022
EM: Round [404] log likelihood: -11918.587753
EM: Round [405] log likelihood: -11918.586489
EM: Round [406] log likelihood: -11918.585229
EM: Round [407] log likelihood: -11918.583973
EM: Round [408] log likelihood: -11918.582721
EM: Round [409] log likelihood: -11918.581473
EM: Round [410] log likelihood: -11918.580229
EM: Round [411] log likelihood: -11918.578989
EM: Round [412] log likelihood: -11918.577753
EM: Round [413] log likelihood: -11918.576522
EM: Round [414] log likelihood: -11918.575294
EM: Round [415] log likelihood: -11918.574070
EM: Round [416] log likelihood: -11918.572851
EM: Round [417] log likelihood: -11918.571635
EM: Round [418] log likelihood: -11918.570423
EM: Round [419] log likelihood: -11918.569215
EM: Round [420] log likelihood: -11918.568012
EM: Round [421] log likelihood: -11918.566812
EM: Round [422] log likelihood: -11918.565615
EM: Round [423] log likelihood: -11918.564423
EM: Round [424] log likelihood: -11918.563235
EM: Round [425] log likelihood: -11918.562050
EM: Round [426] log likelihood: -11918.560869
EM: Round [427] log likelihood: -11918.559692
EM: Round [428] log likelihood: -11918.558519
EM: Round [429] log likelihood: -11918.557350
EM: Round [430] log likelihood: -11918.556184
EM: Round [431] log likelihood: -11918.555022
EM: Round [432] log likelihood: -11918.553864
EM: Round [433] log likelihood: -11918.552709
EM: Round [434] log likelihood: -11918.551558
EM: Round [435] log likelihood: -11918.550411
EM: Round [436] log likelihood: -11918.549267
EM: Round [437] log likelihood: -11918.548127
EM: Round [438] log likelihood: -11918.546991
EM: Round [439] log likelihood: -11918.545858
EM: Round [440] log likelihood: -11918.544729
EM: Round [441] log likelihood: -11918.543604
EM: Round [442] log likelihood: -11918.542482
EM: Round [443] log likelihood: -11918.541363
EM: Round [444] log likelihood: -11918.540248
EM: Round [445] log likelihood: -11918.539137
EM: Round [446] log likelihood: -11918.538029
EM: Round [447] log likelihood: -11918.536924
EM: Round [448] log likelihood: -11918.535823
EM: Round [449] log likelihood: -11918.534726
EM: Round [450] log likelihood: -11918.533631
EM: Round [451] log likelihood: -11918.532541
EM: Round [452] log likelihood: -11918.531453
EM: Round [453] log likelihood: -11918.530369
EM: Round [454] log likelihood: -11918.529289
EM: Round [455] log likelihood: -11918.528212
EM: Round [456] log likelihood: -11918.527138
EM: Round [457] log likelihood: -11918.526067
EM: Round [458] log likelihood: -11918.525000
EM: Round [459] log likelihood: -11918.523936
EM: Round [460] log likelihood: -11918.522876
EM: Round [461] log likelihood: -11918.521819
EM: Round [462] log likelihood: -11918.520765
EM: Round [463] log likelihood: -11918.519714
EM: Round [464] log likelihood: -11918.518666
EM: Round [465] log likelihood: -11918.517622
EM: Round [466] log likelihood: -11918.516581
EM: Round [467] log likelihood: -11918.515543
EM: Round [468] log likelihood: -11918.514508
EM: Round [469] log likelihood: -11918.513477
EM: Round [470] log likelihood: -11918.512448
EM: Round [471] log likelihood: -11918.511423
EM: Round [472] log likelihood: -11918.510401
EM: Round [473] log likelihood: -11918.509382
EM: Round [474] log likelihood: -11918.508366
EM: Round [475] log likelihood: -11918.507353
EM: Round [476] log likelihood: -11918.506344
EM: Round [477] log likelihood: -11918.505337
EM: Round [478] log likelihood: -11918.504334
EM: Round [479] log likelihood: -11918.503333
EM: Round [480] log likelihood: -11918.502336
EM: Round [481] log likelihood: -11918.501341
EM: Round [482] log likelihood: -11918.500350
EM: Round [483] log likelihood: -11918.499361
EM: Round [484] log likelihood: -11918.498376
EM: Round [485] log likelihood: -11918.497393
EM: Round [486] log likelihood: -11918.496414
EM: Round [487] log likelihood: -11918.495437
EM: Round [488] log likelihood: -11918.494464
EM: Round [489] log likelihood: -11918.493493
EM: Round [490] log likelihood: -11918.492525
EM: Round [491] log likelihood: -11918.491560
EM: Round [492] log likelihood: -11918.490598
EM: Round [493] log likelihood: -11918.489639
EM: Round [494] log likelihood: -11918.488683
EM: Round [495] log likelihood: -11918.487730
EM: Round [496] log likelihood: -11918.486779
EM: Round [497] log likelihood: -11918.485831
EM: Round [498] log likelihood: -11918.484886
EM: Round [499] log likelihood: -11918.483944
EM: Round [500] log likelihood: -11918.483005
EM: Round [501] log likelihood: -11918.482069
EM: Round [502] log likelihood: -11918.481135
EM: Round [503] log likelihood: -11918.480204
EM: Round [504] log likelihood: -11918.479276
EM: Round [505] log likelihood: -11918.478351
EM: Round [506] log likelihood: -11918.477428
EM: Round [507] log likelihood: -11918.476508
EM: Round [508] log likelihood: -11918.475591
EM: Round [509] log likelihood: -11918.474676
EM: Round [510] log likelihood: -11918.473764
EM: Round [511] log likelihood: -11918.472855
EM: Round [512] log likelihood: -11918.471949
EM: Round [513] log likelihood: -11918.471045
EM: Round [514] log likelihood: -11918.470144
EM: Round [515] log likelihood: -11918.469245
EM: Round [516] log likelihood: -11918.468349
EM: Round [517] log likelihood: -11918.467456
EM: Round [518] log likelihood: -11918.466566
EM: Round [519] log likelihood: -11918.465678
EM: Round [520] log likelihood: -11918.464792
EM: Round [521] log likelihood: -11918.463909
EM: Round [522] log likelihood: -11918.463029
EM: Round [523] log likelihood: -11918.462151
EM: Round [524] log likelihood: -11918.461276
EM: Round [525] log likelihood: -11918.460404
EM: Round [526] log likelihood: -11918.459534
EM: Round [527] log likelihood: -11918.458666
EM: Round [528] log likelihood: -11918.457801
EM: Round [529] log likelihood: -11918.456938
EM: Round [530] log likelihood: -11918.456078
EM: Round [531] log likelihood: -11918.455221
EM: Round [532] log likelihood: -11918.454366
EM: Round [533] log likelihood: -11918.453513
EM: Round [534] log likelihood: -11918.452663
EM: Round [535] log likelihood: -11918.451815
EM: Round [536] log likelihood: -11918.450970
EM: Round [537] log likelihood: -11918.450127
EM: Round [538] log likelihood: -11918.449287
EM: Round [539] log likelihood: -11918.448449
EM: Round [540] log likelihood: -11918.447614
EM: Round [541] log likelihood: -11918.446780
EM: Round [542] log likelihood: -11918.445950
EM: Round [543] log likelihood: -11918.445121
EM: Round [544] log likelihood: -11918.444295
EM: Round [545] log likelihood: -11918.443472
EM: Round [546] log likelihood: -11918.442650
EM: Round [547] log likelihood: -11918.441831
EM: Round [548] log likelihood: -11918.441015
EM: Round [549] log likelihood: -11918.440200
EM: Round [550] log likelihood: -11918.439388
EM: Round [551] log likelihood: -11918.438579
EM: Round [552] log likelihood: -11918.437771
EM: Round [553] log likelihood: -11918.436966
EM: Round [554] log likelihood: -11918.436164
EM: Round [555] log likelihood: -11918.435363
EM: Round [556] log likelihood: -11918.434565
EM: Round [557] log likelihood: -11918.433769
EM: Round [558] log likelihood: -11918.432975
EM: Round [559] log likelihood: -11918.432184
EM: Round [560] log likelihood: -11918.431394
EM: Round [561] log likelihood: -11918.430607
EM: Round [562] log likelihood: -11918.429823
EM: Round [563] log likelihood: -11918.429040
EM: Round [564] log likelihood: -11918.428260
EM: Round [565] log likelihood: -11918.427481
EM: Round [566] log likelihood: -11918.426705
EM: Round [567] log likelihood: -11918.425932
EM: Round [568] log likelihood: -11918.425160
EM: Round [569] log likelihood: -11918.424391
EM: Round [570] log likelihood: -11918.423623
EM: Round [571] log likelihood: -11918.422858
EM: Round [572] log likelihood: -11918.422095
EM: Round [573] log likelihood: -11918.421334
EM: Round [574] log likelihood: -11918.420575
EM: Round [575] log likelihood: -11918.419819
EM: Round [576] log likelihood: -11918.419064
EM: Round [577] log likelihood: -11918.418312
EM: Round [578] log likelihood: -11918.417561
EM: Round [579] log likelihood: -11918.416813
EM: Round [580] log likelihood: -11918.416067
EM: Round [581] log likelihood: -11918.415323
EM: Round [582] log likelihood: -11918.414581
EM: Round [583] log likelihood: -11918.413841
EM: Round [584] log likelihood: -11918.413103
EM: Round [585] log likelihood: -11918.412367
EM: Round [586] log likelihood: -11918.411633
EM: Round [587] log likelihood: -11918.410901
EM: Round [588] log likelihood: -11918.410172
EM: Round [589] log likelihood: -11918.409444
EM: Round [590] log likelihood: -11918.408718
EM: Round [591] log likelihood: -11918.407994
EM: Round [592] log likelihood: -11918.407273
EM: Round [593] log likelihood: -11918.406553
EM: Round [594] log likelihood: -11918.405835
EM: Round [595] log likelihood: -11918.405119
EM: Round [596] log likelihood: -11918.404405
EM: Round [597] log likelihood: -11918.403694
EM: Round [598] log likelihood: -11918.402984
EM: Round [599] log likelihood: -11918.402276
EM: Round [600] log likelihood: -11918.401570
EM: Round [601] log likelihood: -11918.400866
EM: Round [602] log likelihood: -11918.400163
EM: Round [603] log likelihood: -11918.399463
EM: Round [604] log likelihood: -11918.398765
EM: Round [605] log likelihood: -11918.398068
EM: Round [606] log likelihood: -11918.397374
EM: Round [607] log likelihood: -11918.396681
EM: Round [608] log likelihood: -11918.395991
EM: Round [609] log likelihood: -11918.395302
EM: Round [610] log likelihood: -11918.394615
EM: Round [611] log likelihood: -11918.393930
EM: Round [612] log likelihood: -11918.393246
EM: Round [613] log likelihood: -11918.392565
EM: Round [614] log likelihood: -11918.391885
EM: Round [615] log likelihood: -11918.391208
EM: Round [616] log likelihood: -11918.390532
EM: Round [617] log likelihood: -11918.389858
EM: Round [618] log likelihood: -11918.389186
EM: Round [619] log likelihood: -11918.388515
EM: Round [620] log likelihood: -11918.387847
EM: Round [621] log likelihood: -11918.387180
EM: Round [622] log likelihood: -11918.386515
EM: Round [623] log likelihood: -11918.385852
EM: Round [624] log likelihood: -11918.385190
EM: Round [625] log likelihood: -11918.384531
EM: Round [626] log likelihood: -11918.383873
EM: Round [627] log likelihood: -11918.383217
EM: Round [628] log likelihood: -11918.382563
EM: Round [629] log likelihood: -11918.381910
EM: Round [630] log likelihood: -11918.381259
EM: Round [631] log likelihood: -11918.380610
EM: Round [632] log likelihood: -11918.379963
EM: Round [633] log likelihood: -11918.379317
EM: Round [634] log likelihood: -11918.378674
EM: Round [635] log likelihood: -11918.378032
EM: Round [636] log likelihood: -11918.377391
EM: Round [637] log likelihood: -11918.376752
EM: Round [638] log likelihood: -11918.376116
EM: Round [639] log likelihood: -11918.375480
EM: Round [640] log likelihood: -11918.374847
EM: Round [641] log likelihood: -11918.374215
EM: Round [642] log likelihood: -11918.373585
EM: Round [643] log likelihood: -11918.372956
EM: Round [644] log likelihood: -11918.372329
EM: Round [645] log likelihood: -11918.371704
EM: Round [646] log likelihood: -11918.371081
EM: Round [647] log likelihood: -11918.370459
EM: Round [648] log likelihood: -11918.369839
EM: Round [649] log likelihood: -11918.369220
EM: Round [650] log likelihood: -11918.368603
EM: Round [651] log likelihood: -11918.367988
EM: Round [652] log likelihood: -11918.367374
EM: Round [653] log likelihood: -11918.366762
EM: Round [654] log likelihood: -11918.366152
EM: Round [655] log likelihood: -11918.365543
EM: Round [656] log likelihood: -11918.364936
EM: Round [657] log likelihood: -11918.364330
EM: Round [658] log likelihood: -11918.363726
EM: Round [659] log likelihood: -11918.363124
EM: Round [660] log likelihood: -11918.362523
EM: Round [661] log likelihood: -11918.361924
EM: Round [662] log likelihood: -11918.361326
EM: Round [663] log likelihood: -11918.360730
EM: Round [664] log likelihood: -11918.360136
EM: Round [665] log likelihood: -11918.359543
EM: Round [666] log likelihood: -11918.358952
EM: Round [667] log likelihood: -11918.358362
EM: Round [668] log likelihood: -11918.357774
EM: Round [669] log likelihood: -11918.357187
EM: Round [670] log likelihood: -11918.356602
EM: Round [671] log likelihood: -11918.356018
EM: Round [672] log likelihood: -11918.355436
EM: Round [673] log likelihood: -11918.354855
EM: Round [674] log likelihood: -11918.354276
EM: Round [675] log likelihood: -11918.353699
EM: Round [676] log likelihood: -11918.353123
EM: Round [677] log likelihood: -11918.352548
EM: Round [678] log likelihood: -11918.351975
EM: Round [679] log likelihood: -11918.351403
EM: Round [680] log likelihood: -11918.350833
EM: Round [681] log likelihood: -11918.350265
EM: Round [682] log likelihood: -11918.349698
EM: Round [683] log likelihood: -11918.349132
EM: Round [684] log likelihood: -11918.348568
EM: Round [685] log likelihood: -11918.348005
EM: Round [686] log likelihood: -11918.347444
EM: Round [687] log likelihood: -11918.346884
EM: Round [688] log likelihood: -11918.346326
EM: Round [689] log likelihood: -11918.345769
EM: Round [690] log likelihood: -11918.345214
EM: Round [691] log likelihood: -11918.344660
EM: Round [692] log likelihood: -11918.344107
EM: Round [693] log likelihood: -11918.343556
EM: Round [694] log likelihood: -11918.343006
EM: Round [695] log likelihood: -11918.342458
EM: Round [696] log likelihood: -11918.341911
EM: Round [697] log likelihood: -11918.341366
EM: Round [698] log likelihood: -11918.340822
EM: Round [699] log likelihood: -11918.340279
EM: Round [700] log likelihood: -11918.339738
EM: Round [701] log likelihood: -11918.339198
EM: Round [702] log likelihood: -11918.338659
EM: Round [703] log likelihood: -11918.338122
EM: Round [704] log likelihood: -11918.337587
EM: Round [705] log likelihood: -11918.337052
EM: Round [706] log likelihood: -11918.336519
EM: Round [707] log likelihood: -11918.335988
EM: Round [708] log likelihood: -11918.335458
EM: Round [709] log likelihood: -11918.334929
EM: Round [710] log likelihood: -11918.334401
EM: Round [711] log likelihood: -11918.333875
EM: Round [712] log likelihood: -11918.333350
EM: Round [713] log likelihood: -11918.332827
EM: Round [714] log likelihood: -11918.332305
EM: Round [715] log likelihood: -11918.331784
EM: Round [716] log likelihood: -11918.331264
EM: Round [717] log likelihood: -11918.330746
EM: Round [718] log likelihood: -11918.330230
EM: Round [719] log likelihood: -11918.329714
EM: Round [720] log likelihood: -11918.329200
EM: Round [721] log likelihood: -11918.328687
EM: Round [722] log likelihood: -11918.328175
EM: Round [723] log likelihood: -11918.327665
EM: Round [724] log likelihood: -11918.327156
EM: Round [725] log likelihood: -11918.326649
EM: Round [726] log likelihood: -11918.326142
EM: Round [727] log likelihood: -11918.325637
EM: Round [728] log likelihood: -11918.325133
EM: Round [729] log likelihood: -11918.324631
EM: Round [730] log likelihood: -11918.324130
EM: Round [731] log likelihood: -11918.323630
EM: Round [732] log likelihood: -11918.323131
EM: Round [733] log likelihood: -11918.322634
EM: Round [734] log likelihood: -11918.322137
EM: Round [735] log likelihood: -11918.321642
EM: Round [736] log likelihood: -11918.321149
EM: Round [737] log likelihood: -11918.320656
EM: Round [738] log likelihood: -11918.320165
EM: Round [739] log likelihood: -11918.319675
EM: Round [740] log likelihood: -11918.319187
EM: Round [741] log likelihood: -11918.318699
EM: Round [742] log likelihood: -11918.318213
EM: Round [743] log likelihood: -11918.317728
EM: Round [744] log likelihood: -11918.317244
EM: Round [745] log likelihood: -11918.316762
EM: Round [746] log likelihood: -11918.316280
EM: Round [747] log likelihood: -11918.315800
EM: Round [748] log likelihood: -11918.315321
EM: Round [749] log likelihood: -11918.314843
EM: Round [750] log likelihood: -11918.314367
EM: Round [751] log likelihood: -11918.313891
EM: Round [752] log likelihood: -11918.313417
EM: Round [753] log likelihood: -11918.312944
EM: Round [754] log likelihood: -11918.312473
EM: Round [755] log likelihood: -11918.312002
EM: Round [756] log likelihood: -11918.311533
EM: Round [757] log likelihood: -11918.311064
EM: Round [758] log likelihood: -11918.310597
EM: Round [759] log likelihood: -11918.310131
EM: Round [760] log likelihood: -11918.309667
EM: Round [761] log likelihood: -11918.309203
EM: Round [762] log likelihood: -11918.308741
EM: Round [763] log likelihood: -11918.308280
EM: Round [764] log likelihood: -11918.307819
EM: Round [765] log likelihood: -11918.307361
EM: Round [766] log likelihood: -11918.306903
EM: Round [767] log likelihood: -11918.306446
EM: Round [768] log likelihood: -11918.305991
EM: Round [769] log likelihood: -11918.305536
EM: Round [770] log likelihood: -11918.305083
EM: Round [771] log likelihood: -11918.304631
EM: Round [772] log likelihood: -11918.304180
EM: Round [773] log likelihood: -11918.303730
EM: Round [774] log likelihood: -11918.303281
EM: Round [775] log likelihood: -11918.302833
EM: Round [776] log likelihood: -11918.302387
EM: Round [777] log likelihood: -11918.301941
EM: Round [778] log likelihood: -11918.301497
EM: Round [779] log likelihood: -11918.301054
EM: Round [780] log likelihood: -11918.300612
EM: Round [781] log likelihood: -11918.300171
EM: Round [782] log likelihood: -11918.299731
EM: Round [783] log likelihood: -11918.299292
EM: Round [784] log likelihood: -11918.298854
EM: Round [785] log likelihood: -11918.298418
EM: Round [786] log likelihood: -11918.297982
EM: Round [787] log likelihood: -11918.297547
EM: Round [788] log likelihood: -11918.297114
EM: Round [789] log likelihood: -11918.296682
EM: Round [790] log likelihood: -11918.296250
EM: Round [791] log likelihood: -11918.295820
EM: Round [792] log likelihood: -11918.295391
EM: Round [793] log likelihood: -11918.294963
EM: Round [794] log likelihood: -11918.294536
EM: Round [795] log likelihood: -11918.294110
EM: Round [796] log likelihood: -11918.293685
EM: Round [797] log likelihood: -11918.293261
EM: Round [798] log likelihood: -11918.292838
EM: Round [799] log likelihood: -11918.292416
EM: Round [800] log likelihood: -11918.291995
EM: Round [801] log likelihood: -11918.291575
EM: Round [802] log likelihood: -11918.291157
EM: Round [803] log likelihood: -11918.290739
EM: Round [804] log likelihood: -11918.290322
EM: Round [805] log likelihood: -11918.289906
EM: Round [806] log likelihood: -11918.289492
EM: Round [807] log likelihood: -11918.289078
EM: Round [808] log likelihood: -11918.288666
EM: Round [809] log likelihood: -11918.288254
EM: Round [810] log likelihood: -11918.287843
EM: Round [811] log likelihood: -11918.287434
EM: Round [812] log likelihood: -11918.287025
EM: Round [813] log likelihood: -11918.286617
EM: Round [814] log likelihood: -11918.286211
EM: Round [815] log likelihood: -11918.285805
EM: Round [816] log likelihood: -11918.285401
EM: Round [817] log likelihood: -11918.284997
EM: Round [818] log likelihood: -11918.284594
EM: Round [819] log likelihood: -11918.284193
EM: Round [820] log likelihood: -11918.283792
EM: Round [821] log likelihood: -11918.283392
EM: Round [822] log likelihood: -11918.282993
EM: Round [823] log likelihood: -11918.282596
EM: Round [824] log likelihood: -11918.282199
EM: Round [825] log likelihood: -11918.281803
EM: Round [826] log likelihood: -11918.281408
EM: Round [827] log likelihood: -11918.281014
EM: Round [828] log likelihood: -11918.280621
EM: Round [829] log likelihood: -11918.280229
EM: Round [830] log likelihood: -11918.279838
EM: Round [831] log likelihood: -11918.279448
EM: Round [832] log likelihood: -11918.279059
EM: Round [833] log likelihood: -11918.278671
EM: Round [834] log likelihood: -11918.278283
EM: Round [835] log likelihood: -11918.277897
EM: Round [836] log likelihood: -11918.277512
EM: Round [837] log likelihood: -11918.277127
EM: Round [838] log likelihood: -11918.276744
EM: Round [839] log likelihood: -11918.276361
EM: Round [840] log likelihood: -11918.275979
EM: Round [841] log likelihood: -11918.275599
EM: Round [842] log likelihood: -11918.275219
EM: Round [843] log likelihood: -11918.274840
EM: Round [844] log likelihood: -11918.274462
EM: Round [845] log likelihood: -11918.274085
EM: Round [846] log likelihood: -11918.273708
EM: Round [847] log likelihood: -11918.273333
EM: Round [848] log likelihood: -11918.272959
EM: Round [849] log likelihood: -11918.272585
EM: Round [850] log likelihood: -11918.272213
EM: Round [851] log likelihood: -11918.271841
EM: Round [852] log likelihood: -11918.271470
EM: Round [853] log likelihood: -11918.271100
EM: Round [854] log likelihood: -11918.270731
EM: Round [855] log likelihood: -11918.270363
EM: Round [856] log likelihood: -11918.269996
EM: Round [857] log likelihood: -11918.269630
EM: Round [858] log likelihood: -11918.269264
EM: Round [859] log likelihood: -11918.268900
EM: Round [860] log likelihood: -11918.268536
EM: Round [861] log likelihood: -11918.268173
EM: Round [862] log likelihood: -11918.267811
EM: Round [863] log likelihood: -11918.267450
EM: Round [864] log likelihood: -11918.267090
EM: Round [865] log likelihood: -11918.266730
EM: Round [866] log likelihood: -11918.266372
EM: Round [867] log likelihood: -11918.266014
EM: Round [868] log likelihood: -11918.265657
EM: Round [869] log likelihood: -11918.265301
EM: Round [870] log likelihood: -11918.264946
EM: Round [871] log likelihood: -11918.264592
EM: Round [872] log likelihood: -11918.264239
EM: Round [873] log likelihood: -11918.263886
EM: Round [874] log likelihood: -11918.263534
EM: Round [875] log likelihood: -11918.263183
EM: Round [876] log likelihood: -11918.262833
EM: Round [877] log likelihood: -11918.262484
EM: Round [878] log likelihood: -11918.262136
EM: Round [879] log likelihood: -11918.261788
EM: Round [880] log likelihood: -11918.261442
EM: Round [881] log likelihood: -11918.261096
EM: Round [882] log likelihood: -11918.260751
EM: Round [883] log likelihood: -11918.260406
EM: Round [884] log likelihood: -11918.260063
EM: Round [885] log likelihood: -11918.259720
EM: Round [886] log likelihood: -11918.259379
EM: Round [887] log likelihood: -11918.259038
EM: Round [888] log likelihood: -11918.258697
EM: Round [889] log likelihood: -11918.258358
EM: Round [890] log likelihood: -11918.258019
EM: Round [891] log likelihood: -11918.257682
EM: Round [892] log likelihood: -11918.257345
EM: Round [893] log likelihood: -11918.257009
EM: Round [894] log likelihood: -11918.256673
EM: Round [895] log likelihood: -11918.256339
EM: Round [896] log likelihood: -11918.256005
EM: Round [897] log likelihood: -11918.255672
EM: Round [898] log likelihood: -11918.255340
EM: Round [899] log likelihood: -11918.255008
EM: Round [900] log likelihood: -11918.254678
EM: Round [901] log likelihood: -11918.254348
EM: Round [902] log likelihood: -11918.254019
EM: Round [903] log likelihood: -11918.253691
EM: Round [904] log likelihood: -11918.253363
EM: Round [905] log likelihood: -11918.253036
EM: Round [906] log likelihood: -11918.252710
EM: Round [907] log likelihood: -11918.252385
EM: Round [908] log likelihood: -11918.252061
EM: Round [909] log likelihood: -11918.251737
EM: Round [910] log likelihood: -11918.251414
EM: Round [911] log likelihood: -11918.251092
EM: Round [912] log likelihood: -11918.250771
EM: Round [913] log likelihood: -11918.250450
EM: Round [914] log likelihood: -11918.250130
EM: Round [915] log likelihood: -11918.249811
EM: Round [916] log likelihood: -11918.249493
EM: Round [917] log likelihood: -11918.249175
EM: Round [918] log likelihood: -11918.248858
EM: Round [919] log likelihood: -11918.248542
EM: Round [920] log likelihood: -11918.248227
EM: Round [921] log likelihood: -11918.247912
EM: Round [922] log likelihood: -11918.247598
EM: Round [923] log likelihood: -11918.247285
EM: Round [924] log likelihood: -11918.246973
EM: Round [925] log likelihood: -11918.246661
EM: Round [926] log likelihood: -11918.246350
EM: Round [927] log likelihood: -11918.246040
EM: Round [928] log likelihood: -11918.245731
EM: Round [929] log likelihood: -11918.245422
EM: Round [930] log likelihood: -11918.245114
EM: Round [931] log likelihood: -11918.244806
EM: Round [932] log likelihood: -11918.244500
EM: Round [933] log likelihood: -11918.244194
EM: Round [934] log likelihood: -11918.243889
EM: Round [935] log likelihood: -11918.243584
EM: Round [936] log likelihood: -11918.243281
EM: Round [937] log likelihood: -11918.242978
EM: Round [938] log likelihood: -11918.242675
EM: Round [939] log likelihood: -11918.242374
EM: Round [940] log likelihood: -11918.242073
EM: Round [941] log likelihood: -11918.241773
EM: Round [942] log likelihood: -11918.241473
EM: Round [943] log likelihood: -11918.241174
EM: Round [944] log likelihood: -11918.240876
EM: Round [945] log likelihood: -11918.240579
EM: Round [946] log likelihood: -11918.240282
EM: Round [947] log likelihood: -11918.239986
EM: Round [948] log likelihood: -11918.239691
EM: Round [949] log likelihood: -11918.239396
EM: Round [950] log likelihood: -11918.239102
EM: Round [951] log likelihood: -11918.238809
EM: Round [952] log likelihood: -11918.238516
EM: Round [953] log likelihood: -11918.238224
EM: Round [954] log likelihood: -11918.237933
EM: Round [955] log likelihood: -11918.237643
EM: Round [956] log likelihood: -11918.237353
EM: Round [957] log likelihood: -11918.237064
EM: Round [958] log likelihood: -11918.236775
EM: Round [959] log likelihood: -11918.236487
EM: Round [960] log likelihood: -11918.236200
EM: Round [961] log likelihood: -11918.235913
EM: Round [962] log likelihood: -11918.235628
EM: Round [963] log likelihood: -11918.235342
EM: Round [964] log likelihood: -11918.235058
EM: Round [965] log likelihood: -11918.234774
EM: Round [966] log likelihood: -11918.234491
EM: Round [967] log likelihood: -11918.234208
EM: Round [968] log likelihood: -11918.233926
EM: Round [969] log likelihood: -11918.233645
EM: Round [970] log likelihood: -11918.233364
EM: Round [971] log likelihood: -11918.233085
EM: Round [972] log likelihood: -11918.232805
EM: Round [973] log likelihood: -11918.232527
EM: Round [974] log likelihood: -11918.232249
EM: Round [975] log likelihood: -11918.231971
EM: Round [976] log likelihood: -11918.231694
EM: Round [977] log likelihood: -11918.231418
EM: Round [978] log likelihood: -11918.231143
EM: Round [979] log likelihood: -11918.230868
EM: Round [980] log likelihood: -11918.230594
EM: Round [981] log likelihood: -11918.230320
EM: Round [982] log likelihood: -11918.230048
EM: Round [983] log likelihood: -11918.229775
EM: Round [984] log likelihood: -11918.229504
EM: Round [985] log likelihood: -11918.229233
EM: Round [986] log likelihood: -11918.228962
EM: Round [987] log likelihood: -11918.228692
EM: Round [988] log likelihood: -11918.228423
EM: Round [989] log likelihood: -11918.228155
EM: Round [990] log likelihood: -11918.227887
EM: Round [991] log likelihood: -11918.227620
EM: Round [992] log likelihood: -11918.227353
EM: Round [993] log likelihood: -11918.227087
EM: Round [994] log likelihood: -11918.226821
EM: Round [995] log likelihood: -11918.226557
EM: Round [996] log likelihood: -11918.226292
EM: Round [997] log likelihood: -11918.226029
EM: Round [998] log likelihood: -11918.225766
EM: Round [999] log likelihood: -11918.225503
EM: Round [1000] log likelihood: -11918.225241
EM: Round [1001] log likelihood: -11918.224980
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/EM_adj_counts.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM
-total frags in /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz: 295315142
Execution Time = 5.29 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/add_FFPM.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fa --gtf /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf > /tmp/nxf.n5ewjTXfr6/fi_workdir/microH.dat
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fa --gtf /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gtf > /tmp/nxf.n5ewjTXfr6/fi_workdir/microH.dat
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/microH.dat.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.n5ewjTXfr6/fi_workdir/microH.dat /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.n5ewjTXfr6/fi_workdir/microH.dat /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/append_microH_info.ok
Running: cp /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.tsv
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.tsv
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/cp_final.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.abridged.tsv
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.abridged.tsv
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/final.abridged.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.n5ewjTXfr6 --json_outfile /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_inspector_web.json --file_prefix 1173_T46_T1_RNA_SLD_01_A23T55JLT4_1
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.n5ewjTXfr6 --json_outfile /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_inspector_web.json --file_prefix 1173_T46_T1_RNA_SLD_01_A23T55JLT4_1
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/create_fi_igvjs.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_inspector_web.json --input_file_prefix 1173_T46_T1_RNA_SLD_01_A23T55JLT4_1 --html_output /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_inspector_web.html
Warning - not locating file: /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.gmap_trinity_GG.fusions.gff3.bed
Execution Time = 0.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_inspector_web.json --input_file_prefix 1173_T46_T1_RNA_SLD_01_A23T55JLT4_1 --html_output /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.fusion_inspector_web.html
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/fusion_reports_html.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.abridged.tsv --genome_lib_dir /tmp/nxf.n5ewjTXfr6/ctat_genome_lib_build_dir > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.abridged.tsv.annotated
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.abridged.tsv --genome_lib_dir /tmp/nxf.n5ewjTXfr6/ctat_genome_lib_build_dir > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.abridged.tsv.annotated
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/fusion_annotator.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.abridged.tsv.annotated --genome_lib_dir /tmp/nxf.n5ewjTXfr6/ctat_genome_lib_build_dir > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect
WARNING, no entry stored in dbm for [ENSG00000135477.11]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000257259.3]
WARNING, no entry stored in dbm for [ENSG00000257259.3]
WARNING, no entry stored in dbm for [ENSG00000257259.3]
WARNING, no entry stored in dbm for [ENSG00000257259.3]
WARNING, no entry stored in dbm for [ENSG00000257259.3]
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.abridged.tsv.annotated --genome_lib_dir /tmp/nxf.n5ewjTXfr6/ctat_genome_lib_build_dir > /tmp/nxf.n5ewjTXfr6/1173_T46_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect
Running: touch /tmp/nxf.n5ewjTXfr6/chckpts_dir/fusion_coding_region_effect.ok
ls: cannot access 'IGV_inputs': No such file or directory