File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/895b4cbd7476b2194a04833e319919/.command.log
Size
747 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (1173_PCB_T1_RNA_SLD_01_A23T55JLT4_2)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/e3ee2206acc86426ae826f9283e385/1173_PCB_T1_RNA_SLD_01_A23T55JLT4_2.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/895b4cbd7476b2194a04833e319919/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/895b4cbd7476b2194a04833e319919/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  1173_PCB_T1_RNA_SLD_01_A23T55JLT4_2: vaf_p90=0.995980 -> CONTAMINATED (~0.6%)

Output saved to: 1173_PCB_T1_RNA_SLD_01_A23T55JLT4_2.predictions.csv
Summary: 1/1 samples flagged as contaminated