Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/fcb694019005c9dbc225a558b8f32f/1173_LQD_T1_RNA_SLD_01_A23T55JLT4_1_2.fastp.fastq.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/fcb694019005c9dbc225a558b8f32f/1173_LQD_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/2855620bbf1408f6bf9a1f5f846e08/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/2855620bbf1408f6bf9a1f5f846e08/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/d7861d7769bbb75edc110911c8da8e/1173_LQD_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.cPpwKSwF2i/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.cPpwKSwF2i/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary
-sample contains 294980563 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.cPpwKSwF2i/ctat_genome_lib_build_dir  -J /tmp/nxf.cPpwKSwF2i/1173_LQD_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction  -O /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.cPpwKSwF2i/1173_LQD_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.cPpwKSwF2i/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

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-building interval tree based on /tmp/nxf.cPpwKSwF2i/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

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[2680000], rate=41209.64/min 
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[2700000], rate=41137.63/min 
[2710000], rate=41102.12/min 
-building interval tree based on /tmp/nxf.cPpwKSwF2i/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=85714.29/min 
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[3600000], rate=47978.68/min 
[3610000], rate=47930.96/min 
[3620000], rate=47883.60/min -building interval tree based on /tmp/nxf.cPpwKSwF2i/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=37500.00/min 
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[30000], rate=31034.48/min 
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[2000000], rate=32214.77/min 
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[2260000], rate=32432.43/min 
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[3000000], rate=41676.31/min 
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[3040000], rate=41911.76/min 
[3050000], rate=41982.11/min 
[3060000], rate=42042.59/min 
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[3080000], rate=42172.52/min 
[3090000], rate=42232.35/min 
[3100000], rate=42301.57/min 
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[3120000], rate=42420.12/min 
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[3140000], rate=42537.82/min 
[3150000], rate=42596.35/min 
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[3170000], rate=42731.97/min 
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[3200000], rate=42895.44/min 
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[3300000], rate=43363.99/min 
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[3320000], rate=43483.96/min 
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[3340000], rate=43603.13/min 
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[3360000], rate=43345.52/min 
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[3380000], rate=43103.08/min 
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[3400000], rate=42920.26/min 
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[3420000], rate=42776.74/min 
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[3440000], rate=42697.56/min 
[3450000], rate=42662.82/min 
[3460000], rate=42628.34/min 
[3470000], rate=42602.82/min 
[3480000], rate=42577.49/min 
[3490000], rate=42560.98/min 
[3500000], rate=42544.57/min 
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[3520000], rate=42529.20/min 
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[3550000], rate=42548.94/min 
[3560000], rate=42558.28/min 
[3570000], rate=42567.57/min 
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[3590000], rate=42594.42/min 
[3600000], rate=42620.36/min te=37386.65/min 
[2690000], rate=37456.49/min 
[2700000], rate=37526.06/min 
[2710000], rate=37604.07/min 
[2720000], rate=37673.13/min 
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[2760000], rate=37981.65/min 
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[2800000], rate=37991.86/min 
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[3000000], rate=37570.44/min 
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[3100000], rate=37881.87/min 
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[3500000], rate=39466.27/min 
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[3590000], rate=39661.20/min 
[3600000], rate=39691.29/min [2720000], rate=34708.63/min 
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[2740000], rate=34845.27/min 
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[2800000], rate=35301.53/min 
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[2970000], rate=35927.42/min 
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[3000000], rate=36086.61/min 
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[3270000], rate=37774.36/min 
[3280000], rate=37809.80/min 
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[3320000], rate=37986.27/min 
[3330000], rate=38028.17/min 
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[3360000], rate=38152.91/min 
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[3400000], rate=38367.50/min 
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[3450000], rate=38626.61/min 
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[3470000], rate=38734.88/min 
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[3490000], rate=38856.93/min 
[3500000], rate=38917.72/min 
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[3520000], rate=39038.82/min 
[3530000], rate=39106.35/min 
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[3550000], rate=39233.74/min 
[3560000], rate=39300.83/min 
[3570000], rate=39367.76/min 
[3580000], rate=39427.31/min 
[3590000], rate=39486.71/min 
[3600000], rate=39545.95/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.cPpwKSwF2i/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 0.00 reads per min processed...  
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 4772727.27 reads per min processed...  
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 4800000.00 reads per min processed...  
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 4695652.17 reads per min processed...  
 4666666.67 reads per min processed...  
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 4629921.26 reads per min processed...  
 4640625.00 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.cPpwKSwF2i/1173_LQD_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.cPpwKSwF2i/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -5002443.840271
EM: Round [1] log likelihood: -5001772.685110
EM: Round [2] log likelihood: -5001558.275774
EM: Round [3] log likelihood: -5001462.535569
EM: Round [4] log likelihood: -5001412.453823
EM: Round [5] log likelihood: -5001383.837948
EM: Round [6] log likelihood: -5001366.442934
EM: Round [7] log likelihood: -5001355.302296
EM: Round [8] log likelihood: -5001347.821371
EM: Round [9] log likelihood: -5001342.575557
EM: Round [10] log likelihood: -5001338.751131
EM: Round [11] log likelihood: -5001335.866464
EM: Round [12] log likelihood: -5001333.626440
EM: Round [13] log likelihood: -5001331.843859
EM: Round [14] log likelihood: -5001330.395878
EM: Round [15] log likelihood: -5001329.199240
EM: Round [16] log likelihood: -5001328.195814
EM: Round [17] log likelihood: -5001327.343906
EM: Round [18] log likelihood: -5001326.612885
EM: Round [19] log likelihood: -5001325.979760
EM: Round [20] log likelihood: -5001325.426949
EM: Round [21] log likelihood: -5001324.940779
EM: Round [22] log likelihood: -5001324.510460
EM: Round [23] log likelihood: -5001324.127364
EM: Round [24] log likelihood: -5001323.784515
EM: Round [25] log likelihood: -5001323.476210
EM: Round [26] log likelihood: -5001323.197748
EM: Round [27] log likelihood: -5001322.945220
EM: Round [28] log likelihood: -5001322.715350
EM: Round [29] log likelihood: -5001322.505376
EM: Round [30] log likelihood: -5001322.312955
EM: Round [31] log likelihood: -5001322.136086
EM: Round [32] log likelihood: -5001321.973054
EM: Round [33] log likelihood: -5001321.822379
EM: Round [34] log likelihood: -5001321.682781
EM: Round [35] log likelihood: -5001321.553146
EM: Round [36] log likelihood: -5001321.432500
EM: Round [37] log likelihood: -5001321.319991
EM: Round [38] log likelihood: -5001321.214869
EM: Round [39] log likelihood: -5001321.116472
EM: Round [40] log likelihood: -5001321.024211
EM: Round [41] log likelihood: -5001320.937567
EM: Round [42] log likelihood: -5001320.856074
EM: Round [43] log likelihood: -5001320.779316
EM: Round [44] log likelihood: -5001320.706922
EM: Round [45] log likelihood: -5001320.638555
EM: Round [46] log likelihood: -5001320.573914
EM: Round [47] log likelihood: -5001320.512727
EM: Round [48] log likelihood: -5001320.454746
EM: Round [49] log likelihood: -5001320.399746
EM: Round [50] log likelihood: -5001320.347523
EM: Round [51] log likelihood: -5001320.297892
EM: Round [52] log likelihood: -5001320.250681
EM: Round [53] log likelihood: -5001320.205736
EM: Round [54] log likelihood: -5001320.162912
EM: Round [55] log likelihood: -5001320.122078
EM: Round [56] log likelihood: -5001320.083114
EM: Round [57] log likelihood: -5001320.045907
EM: Round [58] log likelihood: -5001320.010355
EM: Round [59] log likelihood: -5001319.976361
EM: Round [60] log likelihood: -5001319.943838
EM: Round [61] log likelihood: -5001319.912702
EM: Round [62] log likelihood: -5001319.882878
EM: Round [63] log likelihood: -5001319.854295
EM: Round [64] log likelihood: -5001319.826886
EM: Round [65] log likelihood: -5001319.800589
EM: Round [66] log likelihood: -5001319.775347
EM: Round [67] log likelihood: -5001319.751105
EM: Round [68] log likelihood: -5001319.727813
EM: Round [69] log likelihood: -5001319.705423
EM: Round [70] log likelihood: -5001319.683892
EM: Round [71] log likelihood: -5001319.663177
EM: Round [72] log likelihood: -5001319.643238
EM: Round [73] log likelihood: -5001319.624040
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EM: Round [77] log likelihood: -5001319.553978
EM: Round [78] log likelihood: -5001319.537995
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EM: Round [80] log likelihood: -5001319.507679
EM: Round [81] log likelihood: -5001319.493298
EM: Round [82] log likelihood: -5001319.479406
EM: Round [83] log likelihood: -5001319.465980
EM: Round [84] log likelihood: -5001319.453003
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EM: Round [86] log likelihood: -5001319.428315
EM: Round [87] log likelihood: -5001319.416570
EM: Round [88] log likelihood: -5001319.405202
EM: Round [89] log likelihood: -5001319.394197
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EM: Round [91] log likelihood: -5001319.373214
EM: Round [92] log likelihood: -5001319.363210
EM: Round [93] log likelihood: -5001319.353514
EM: Round [94] log likelihood: -5001319.344113
EM: Round [95] log likelihood: -5001319.334997
EM: Round [96] log likelihood: -5001319.326154
EM: Round [97] log likelihood: -5001319.317574
EM: Round [98] log likelihood: -5001319.309246
EM: Round [99] log likelihood: -5001319.301162
EM: Round [100] log likelihood: -5001319.293313
EM: Round [101] log likelihood: -5001319.285689
EM: Round [102] log likelihood: -5001319.278283
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EM: Round [110] log likelihood: -5001319.225980
EM: Round [111] log likelihood: -5001319.220212
EM: Round [112] log likelihood: -5001319.214597
EM: Round [113] log likelihood: -5001319.209129
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EM: Round [115] log likelihood: -5001319.198613
EM: Round [116] log likelihood: -5001319.193556
EM: Round [117] log likelihood: -5001319.188628
EM: Round [118] log likelihood: -5001319.183823
EM: Round [119] log likelihood: -5001319.179139
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EM: Round [121] log likelihood: -5001319.170116
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EM: Round [123] log likelihood: -5001319.161530
EM: Round [124] log likelihood: -5001319.157391
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EM: Round [126] log likelihood: -5001319.149409
EM: Round [127] log likelihood: -5001319.145559
EM: Round [128] log likelihood: -5001319.141800
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EM: Round [131] log likelihood: -5001319.131037
EM: Round [132] log likelihood: -5001319.127613
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EM: Round [138] log likelihood: -5001319.108625
EM: Round [139] log likelihood: -5001319.105701
EM: Round [140] log likelihood: -5001319.102840
EM: Round [141] log likelihood: -5001319.100041
EM: Round [142] log likelihood: -5001319.097302
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EM: Round [215] log likelihood: -5001318.991943
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EM: Round [218] log likelihood: -5001318.989882
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EM: Round [346] log likelihood: -5001318.952403
EM: Round [347] log likelihood: -5001318.952303
EM: Stopping iterations at round 347 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -4997350.864442
EM: Round [1] log likelihood: -4996875.782698
EM: Round [2] log likelihood: -4996727.968753
EM: Round [3] log likelihood: -4996663.096002
EM: Round [4] log likelihood: -4996629.913534
EM: Round [5] log likelihood: -4996611.478746
EM: Round [6] log likelihood: -4996600.629644
EM: Round [7] log likelihood: -4996593.918885
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EM: Round [11] log likelihood: -4996582.952121
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EM: Round [152] log likelihood: -4996573.785005
EM: Round [153] log likelihood: -4996573.783462
EM: Round [154] log likelihood: -4996573.781948
EM: Round [155] log likelihood: -4996573.780461
EM: Round [156] log likelihood: -4996573.779001
EM: Round [157] log likelihood: -4996573.777567
EM: Round [158] log likelihood: -4996573.776159
EM: Round [159] log likelihood: -4996573.774776
EM: Round [160] log likelihood: -4996573.773418
EM: Round [161] log likelihood: -4996573.772083
EM: Round [162] log likelihood: -4996573.770772
EM: Round [163] log likelihood: -4996573.769484
EM: Round [164] log likelihood: -4996573.768219
EM: Round [165] log likelihood: -4996573.766976
EM: Round [166] log likelihood: -4996573.765754
EM: Round [167] log likelihood: -4996573.764553
EM: Round [168] log likelihood: -4996573.763373
EM: Round [169] log likelihood: -4996573.762213
EM: Round [170] log likelihood: -4996573.761073
EM: Round [171] log likelihood: -4996573.759952
EM: Round [172] log likelihood: -4996573.758850
EM: Round [173] log likelihood: -4996573.757767
EM: Round [174] log likelihood: -4996573.756702
EM: Round [175] log likelihood: -4996573.755655
EM: Round [176] log likelihood: -4996573.754625
EM: Round [177] log likelihood: -4996573.753613
EM: Round [178] log likelihood: -4996573.752617
EM: Round [179] log likelihood: -4996573.751638
EM: Round [180] log likelihood: -4996573.750674
EM: Round [181] log likelihood: -4996573.749727
EM: Round [182] log likelihood: -4996573.748795
EM: Round [183] log likelihood: -4996573.747878
EM: Round [184] log likelihood: -4996573.746977
EM: Round [185] log likelihood: -4996573.746090
EM: Round [186] log likelihood: -4996573.745217
EM: Round [187] log likelihood: -4996573.744358
EM: Round [188] log likelihood: -4996573.743513
EM: Round [189] log likelihood: -4996573.742682
EM: Round [190] log likelihood: -4996573.741863
EM: Round [191] log likelihood: -4996573.741058
EM: Round [192] log likelihood: -4996573.740266
EM: Round [193] log likelihood: -4996573.739486
EM: Round [194] log likelihood: -4996573.738719
EM: Round [195] log likelihood: -4996573.737964
EM: Round [196] log likelihood: -4996573.737220
EM: Round [197] log likelihood: -4996573.736489
EM: Round [198] log likelihood: -4996573.735769
EM: Round [199] log likelihood: -4996573.735060
EM: Round [200] log likelihood: -4996573.734362
EM: Round [201] log likelihood: -4996573.733675
EM: Round [202] log likelihood: -4996573.732998
EM: Round [203] log likelihood: -4996573.732332
EM: Round [204] log likelihood: -4996573.731676
EM: Round [205] log likelihood: -4996573.731031
EM: Round [206] log likelihood: -4996573.730395
EM: Round [207] log likelihood: -4996573.729769
EM: Round [208] log likelihood: -4996573.729153
EM: Round [209] log likelihood: -4996573.728546
EM: Round [210] log likelihood: -4996573.727949
EM: Round [211] log likelihood: -4996573.727360
EM: Round [212] log likelihood: -4996573.726781
EM: Round [213] log likelihood: -4996573.726210
EM: Round [214] log likelihood: -4996573.725648
EM: Round [215] log likelihood: -4996573.725094
EM: Round [216] log likelihood: -4996573.724549
EM: Round [217] log likelihood: -4996573.724011
EM: Round [218] log likelihood: -4996573.723482
EM: Round [219] log likelihood: -4996573.722961
EM: Round [220] log likelihood: -4996573.722448
EM: Round [221] log likelihood: -4996573.721942
EM: Round [222] log likelihood: -4996573.721444
EM: Round [223] log likelihood: -4996573.720953
EM: Round [224] log likelihood: -4996573.720470
EM: Round [225] log likelihood: -4996573.719994
EM: Round [226] log likelihood: -4996573.719525
EM: Round [227] log likelihood: -4996573.719062
EM: Round [228] log likelihood: -4996573.718607
EM: Round [229] log likelihood: -4996573.718158
EM: Round [230] log likelihood: -4996573.717716
EM: Round [231] log likelihood: -4996573.717281
EM: Round [232] log likelihood: -4996573.716851
EM: Round [233] log likelihood: -4996573.716429
EM: Round [234] log likelihood: -4996573.716012
EM: Round [235] log likelihood: -4996573.715601
EM: Round [236] log likelihood: -4996573.715197
EM: Round [237] log likelihood: -4996573.714798
EM: Round [238] log likelihood: -4996573.714405
EM: Round [239] log likelihood: -4996573.714018
EM: Round [240] log likelihood: -4996573.713636
EM: Round [241] log likelihood: -4996573.713260
EM: Round [242] log likelihood: -4996573.712889
EM: Round [243] log likelihood: -4996573.712524
EM: Round [244] log likelihood: -4996573.712164
EM: Round [245] log likelihood: -4996573.711809
EM: Round [246] log likelihood: -4996573.711460
EM: Round [247] log likelihood: -4996573.711115
EM: Round [248] log likelihood: -4996573.710775
EM: Round [249] log likelihood: -4996573.710440
EM: Round [250] log likelihood: -4996573.710110
EM: Round [251] log likelihood: -4996573.709785
EM: Round [252] log likelihood: -4996573.709464
EM: Round [253] log likelihood: -4996573.709148
EM: Round [254] log likelihood: -4996573.708836
EM: Round [255] log likelihood: -4996573.708529
EM: Round [256] log likelihood: -4996573.708226
EM: Round [257] log likelihood: -4996573.707928
EM: Round [258] log likelihood: -4996573.707634
EM: Round [259] log likelihood: -4996573.707344
EM: Round [260] log likelihood: -4996573.707058
EM: Round [261] log likelihood: -4996573.706776
EM: Round [262] log likelihood: -4996573.706498
EM: Round [263] log likelihood: -4996573.706224
EM: Round [264] log likelihood: -4996573.705954
EM: Round [265] log likelihood: -4996573.705687
EM: Round [266] log likelihood: -4996573.705425
EM: Round [267] log likelihood: -4996573.705166
EM: Round [268] log likelihood: -4996573.704910
EM: Round [269] log likelihood: -4996573.704659
EM: Round [270] log likelihood: -4996573.704411
EM: Round [271] log likelihood: -4996573.704166
EM: Round [272] log likelihood: -4996573.703925
EM: Round [273] log likelihood: -4996573.703687
EM: Round [274] log likelihood: -4996573.703452
EM: Round [275] log likelihood: -4996573.703221
EM: Round [276] log likelihood: -4996573.702993
EM: Round [277] log likelihood: -4996573.702768
EM: Round [278] log likelihood: -4996573.702546
EM: Round [279] log likelihood: -4996573.702327
EM: Round [280] log likelihood: -4996573.702112
EM: Round [281] log likelihood: -4996573.701899
EM: Round [282] log likelihood: -4996573.701689
EM: Round [283] log likelihood: -4996573.701482
EM: Round [284] log likelihood: -4996573.701278
EM: Round [285] log likelihood: -4996573.701077
EM: Round [286] log likelihood: -4996573.700879
EM: Round [287] log likelihood: -4996573.700683
EM: Round [288] log likelihood: -4996573.700490
EM: Round [289] log likelihood: -4996573.700300
EM: Round [290] log likelihood: -4996573.700112
EM: Round [291] log likelihood: -4996573.699927
EM: Round [292] log likelihood: -4996573.699745
EM: Round [293] log likelihood: -4996573.699565
EM: Round [294] log likelihood: -4996573.699387
EM: Round [295] log likelihood: -4996573.699212
EM: Round [296] log likelihood: -4996573.699040
EM: Round [297] log likelihood: -4996573.698869
EM: Round [298] log likelihood: -4996573.698701
EM: Round [299] log likelihood: -4996573.698535
EM: Round [300] log likelihood: -4996573.698372
EM: Round [301] log likelihood: -4996573.698211
EM: Round [302] log likelihood: -4996573.698052
EM: Round [303] log likelihood: -4996573.697895
EM: Round [304] log likelihood: -4996573.697740
EM: Round [305] log likelihood: -4996573.697588
EM: Round [306] log likelihood: -4996573.697437
EM: Round [307] log likelihood: -4996573.697289
EM: Round [308] log likelihood: -4996573.697142
EM: Round [309] log likelihood: -4996573.696998
EM: Round [310] log likelihood: -4996573.696855
EM: Round [311] log likelihood: -4996573.696714
EM: Round [312] log likelihood: -4996573.696576
EM: Round [313] log likelihood: -4996573.696439
EM: Round [314] log likelihood: -4996573.696304
EM: Round [315] log likelihood: -4996573.696171
EM: Round [316] log likelihood: -4996573.696039
EM: Round [317] log likelihood: -4996573.695910
EM: Round [318] log likelihood: -4996573.695782
EM: Round [319] log likelihood: -4996573.695656
EM: Round [320] log likelihood: -4996573.695532
EM: Round [321] log likelihood: -4996573.695409
EM: Round [322] log likelihood: -4996573.695288
EM: Round [323] log likelihood: -4996573.695168
EM: Round [324] log likelihood: -4996573.695051
EM: Round [325] log likelihood: -4996573.694934
EM: Round [326] log likelihood: -4996573.694820
EM: Round [327] log likelihood: -4996573.694706
EM: Round [328] log likelihood: -4996573.694595
EM: Round [329] log likelihood: -4996573.694485
EM: Round [330] log likelihood: -4996573.694376
EM: Round [331] log likelihood: -4996573.694269
EM: Round [332] log likelihood: -4996573.694163
EM: Round [333] log likelihood: -4996573.694059
EM: Round [334] log likelihood: -4996573.693956
EM: Round [335] log likelihood: -4996573.693854
EM: Round [336] log likelihood: -4996573.693754
EM: Round [337] log likelihood: -4996573.693655
EM: Stopping iterations at round 337 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.cPpwKSwF2i/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.cPpwKSwF2i/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.cPpwKSwF2i/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 294980563 > /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.cPpwKSwF2i/ctat_genome_lib_build_dir > /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.cPpwKSwF2i/ctat_genome_lib_build_dir --annotate /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.cPpwKSwF2i/ctat_genome_lib_build_dir
-done, see /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.cPpwKSwF2i/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 518, filtered: 2474)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.cPpwKSwF2i/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.cPpwKSwF2i/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000228739.1]
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WARNING, no entry stored in dbm for [IGH.g@-ext]
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WARNING, no entry stored in dbm for [IGH-.g@-ext]
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WARNING, no entry stored in dbm for [IGH.g@-ext]
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WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000234534.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
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WARNING, no entry stored in dbm for [IGH.g@-ext]
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WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
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WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000234426.3]
WARNING, no entry stored in dbm for [ENSG00000276758.1]
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WARNING, no entry stored in dbm for [IGH-.g@-ext]
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WARNING, no entry stored in dbm for [ENSG00000235749.3]
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WARNING, no entry stored in dbm for [ENSG00000228109.1]
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WARNING, no entry stored in dbm for [ENSG00000265018.6]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000234420.7]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000230559.1]
WARNING, no entry stored in dbm for [ENSG00000256995.8]
WARNING, no entry stored in dbm for [ENSG00000286406.1]
WARNING, no entry stored in dbm for [ENSG00000205534.6]
WARNING, no entry stored in dbm for [ENSG00000225594.1]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000205534.6]
WARNING, no entry stored in dbm for [ENSG00000234426.3]
WARNING, no entry stored in dbm for [ENSG00000203413.3]
WARNING, no entry stored in dbm for [ENSG00000260727.2]
WARNING, no entry stored in dbm for [ENSG00000285835.1]
WARNING, no entry stored in dbm for [ENSG00000241621.1]
WARNING, no entry stored in dbm for [ENSG00000251504.1]
WARNING, no entry stored in dbm for [ENSG00000226472.8]
WARNING, no entry stored in dbm for [ENSG00000250802.7]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000254349.6]
WARNING, no entry stored in dbm for [ENSG00000215483.11]
WARNING, no entry stored in dbm for [ENSG00000158482.10]
WARNING, no entry stored in dbm for [ENSG00000232894.1]
WARNING, no entry stored in dbm for [ENSG00000196796.5]
WARNING, no entry stored in dbm for [ENSG00000257612.2]
WARNING, no entry stored in dbm for [ENSG00000196796.5]
WARNING, no entry stored in dbm for [ENSG00000282458.1]
WARNING, no entry stored in dbm for [ENSG00000234769.7]
WARNING, no entry stored in dbm for [ENSG00000189136.9]
WARNING, no entry stored in dbm for [ENSG00000256995.8]
WARNING, no entry stored in dbm for [ENSG00000224660.2]
WARNING, no entry stored in dbm for [ENSG00000260071.2]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000259995.1]
WARNING, no entry stored in dbm for [ENSG00000287392.1]
WARNING, no entry stored in dbm for [ENSG00000261329.6]
WARNING, no entry stored in dbm for [ENSG00000286797.1]
WARNING, no entry stored in dbm for [ENSG00000254031.6]
WARNING, no entry stored in dbm for [ENSG00000230116.1]
WARNING, no entry stored in dbm for [ENSG00000204622.11]
WARNING, no entry stored in dbm for [ENSG00000235290.1]
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WARNING, no entry stored in dbm for [ENSG00000205853.12]
WARNING, no entry stored in dbm for [ENSG00000259755.1]
WARNING, no entry stored in dbm for [ENSG00000217801.10]
WARNING, no entry stored in dbm for [ENSG00000242880.2]
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WARNING, no entry stored in dbm for [ENSG00000189149.12]
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WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000226823.1]
WARNING, no entry stored in dbm for [ENSG00000230116.1]
WARNING, no entry stored in dbm for [ENSG00000287129.1]
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WARNING, no entry stored in dbm for [ENSG00000242880.2]
WARNING, no entry stored in dbm for [ENSG00000215506.5]
WARNING, no entry stored in dbm for [ENSG00000277146.1]
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WARNING, no entry stored in dbm for [ENSG00000233379.2]
WARNING, no entry stored in dbm for [ENSG00000282890.1]
WARNING, no entry stored in dbm for [ENSG00000068781.21]
WARNING, no entry stored in dbm for [ENSG00000189136.9]
WARNING, no entry stored in dbm for [ENSG00000241621.1]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000287411.1]
WARNING, no entry stored in dbm for [ENSG00000272645.3]
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WARNING, no entry stored in dbm for [ENSG00000215483.11]
WARNING, no entry stored in dbm for [ENSG00000256995.8]
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WARNING, no entry stored in dbm for [ENSG00000259543.1]
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WARNING, no entry stored in dbm for [ENSG00000248445.5]
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WARNING, no entry stored in dbm for [ENSG00000185986.12]
WARNING, no entry stored in dbm for [ENSG00000188002.10]
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WARNING, no entry stored in dbm for [ENSG00000174384.9]
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WARNING, no entry stored in dbm for [ENSG00000215483.11]
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WARNING, no entry stored in dbm for [ENSG00000227486.2]
WARNING, no entry stored in dbm for [ENSG00000235181.1]
WARNING, no entry stored in dbm for [ENSG00000225370.1]
WARNING, no entry stored in dbm for [ENSG00000284964.1]
WARNING, no entry stored in dbm for [ENSG00000274423.1]
WARNING, no entry stored in dbm for [ENSG00000275557.1]
WARNING, no entry stored in dbm for [ENSG00000274423.1]
WARNING, no entry stored in dbm for [ENSG00000260037.5]
WARNING, no entry stored in dbm for [ENSG00000272702.1]
WARNING, no entry stored in dbm for [ENSG00000269293.3]
WARNING, no entry stored in dbm for [ENSG00000237004.4]
WARNING, no entry stored in dbm for [ENSG00000223813.3]
WARNING, no entry stored in dbm for [ENSG00000241738.1]
WARNING, no entry stored in dbm for [ENSG00000269373.1]
WARNING, no entry stored in dbm for [ENSG00000251034.2]
WARNING, no entry stored in dbm for [ENSG00000260798.1]
WARNING, no entry stored in dbm for [ENSG00000254031.6]
WARNING, no entry stored in dbm for [ENSG00000261200.1]
WARNING, no entry stored in dbm for [ENSG00000253948.2]
WARNING, no entry stored in dbm for [ENSG00000259849.2]
WARNING, no entry stored in dbm for [ENSG00000287215.1]
WARNING, no entry stored in dbm for [ENSG00000188933.16]
WARNING, no entry stored in dbm for [ENSG00000239921.6]
WARNING, no entry stored in dbm for [ENSG00000213468.7]
WARNING, no entry stored in dbm for [ENSG00000232823.2]
WARNING, no entry stored in dbm for [ENSG00000228236.2]
WARNING, no entry stored in dbm for [ENSG00000235782.1]
WARNING, no entry stored in dbm for [ENSG00000236130.2]
WARNING, no entry stored in dbm for [ENSG00000215506.5]
WARNING, no entry stored in dbm for [ENSG00000277146.1]
WARNING, no entry stored in dbm for [ENSG00000215506.5]
WARNING, no entry stored in dbm for [ENSG00000277146.1]
WARNING, no entry stored in dbm for [ENSG00000226415.1]
WARNING, no entry stored in dbm for [ENSG00000230215.1]
WARNING, no entry stored in dbm for [ENSG00000251474.6]
WARNING, no entry stored in dbm for [ENSG00000236333.4]
WARNING, no entry stored in dbm for [ENSG00000215895.4]
WARNING, no entry stored in dbm for [ENSG00000220702.1]
WARNING, no entry stored in dbm for [ENSG00000288543.1]
WARNING, no entry stored in dbm for [ENSG00000280054.1]
WARNING, no entry stored in dbm for [ENSG00000271699.5]
WARNING, no entry stored in dbm for [ENSG00000206952.3]
WARNING, no entry stored in dbm for [ENSG00000179571.10]
WARNING, no entry stored in dbm for [ENSG00000229944.3]
WARNING, no entry stored in dbm for [ENSG00000283145.1]
WARNING, no entry stored in dbm for [ENSG00000262801.6]
WARNING, no entry stored in dbm for [ENSG00000280693.2]
WARNING, no entry stored in dbm for [ENSG00000229930.1]
WARNING, no entry stored in dbm for [ENSG00000227681.5]
WARNING, no entry stored in dbm for [ENSG00000242697.2]
WARNING, no entry stored in dbm for [ENSG00000224252.1]
WARNING, no entry stored in dbm for [ENSG00000241431.1]
WARNING, no entry stored in dbm for [ENSG00000251474.6]
WARNING, no entry stored in dbm for [ENSG00000242993.1]
WARNING, no entry stored in dbm for [ENSG00000231084.2]
WARNING, no entry stored in dbm for [ENSG00000262420.3]
WARNING, no entry stored in dbm for [ENSG00000213178.3]
WARNING, no entry stored in dbm for [ENSG00000218300.1]
WARNING, no entry stored in dbm for [ENSG00000242941.1]
WARNING, no entry stored in dbm for [ENSG00000204194.1]
WARNING, no entry stored in dbm for [ENSG00000222449.1]
WARNING, no entry stored in dbm for [ENSG00000233672.9]
WARNING, no entry stored in dbm for [ENSG00000240502.2]
WARNING, no entry stored in dbm for [ENSG00000274234.1]
WARNING, no entry stored in dbm for [ENSG00000259683.1]
WARNING, no entry stored in dbm for [ENSG00000278242.1]
WARNING, no entry stored in dbm for [ENSG00000259683.1]
WARNING, no entry stored in dbm for [ENSG00000186466.5]
WARNING, no entry stored in dbm for [ENSG00000230487.8]
WARNING, no entry stored in dbm for [ENSG00000183146.4]
WARNING, no entry stored in dbm for [ENSG00000273008.1]
WARNING, no entry stored in dbm for [ENSG00000254285.3]
WARNING, no entry stored in dbm for [ENSG00000237274.2]
WARNING, no entry stored in dbm for [ENSG00000273062.1]
WARNING, no entry stored in dbm for [ENSG00000228986.1]
WARNING, no entry stored in dbm for [ENSG00000248188.2]
WARNING, no entry stored in dbm for [ENSG00000275131.3]
WARNING, no entry stored in dbm for [ENSG00000254539.1]
WARNING, no entry stored in dbm for [ENSG00000241255.1]
WARNING, no entry stored in dbm for [ENSG00000236921.1]
WARNING, no entry stored in dbm for [ENSG00000258853.1]
WARNING, no entry stored in dbm for [ENSG00000248578.1]
WARNING, no entry stored in dbm for [ENSG00000271563.1]
WARNING, no entry stored in dbm for [ENSG00000224550.1]
WARNING, no entry stored in dbm for [ENSG00000233031.1]
WARNING, no entry stored in dbm for [ENSG00000239649.3]
WARNING, no entry stored in dbm for [ENSG00000267892.1]
WARNING, no entry stored in dbm for [ENSG00000210135.1]
WARNING, no entry stored in dbm for [ENSG00000245482.2]
WARNING, no entry stored in dbm for [ENSG00000249328.3]
WARNING, no entry stored in dbm for [ENSG00000249328.3]
WARNING, no entry stored in dbm for [ENSG00000228782.7]
WARNING, no entry stored in dbm for [ENSG00000267023.5]
WARNING, no entry stored in dbm for [ENSG00000224141.6]
WARNING, no entry stored in dbm for [ENSG00000224141.6]
WARNING, no entry stored in dbm for [ENSG00000234883.6]
WARNING, no entry stored in dbm for [ENSG00000254860.6]
WARNING, no entry stored in dbm for [ENSG00000234636.2]
WARNING, no entry stored in dbm for [ENSG00000267449.1]
WARNING, no entry stored in dbm for [ENSG00000272106.1]
WARNING, no entry stored in dbm for [ENSG00000257139.1]
WARNING, no entry stored in dbm for [ENSG00000230587.2]
WARNING, no entry stored in dbm for [ENSG00000258733.6]
WARNING, no entry stored in dbm for [ENSG00000234663.7]
WARNING, no entry stored in dbm for [ENSG00000258754.8]
WARNING, no entry stored in dbm for [ENSG00000245937.8]
WARNING, no entry stored in dbm for [ENSG00000228794.10]
WARNING, no entry stored in dbm for [ENSG00000228784.9]
WARNING, no entry stored in dbm for [ENSG00000225269.3]
WARNING, no entry stored in dbm for [ENSG00000231535.7]
WARNING, no entry stored in dbm for [ENSG00000258938.1]
WARNING, no entry stored in dbm for [ENSG00000225370.1]
WARNING, no entry stored in dbm for [ENSG00000237094.12]
WARNING, no entry stored in dbm for [ENSG00000233930.4]
WARNING, no entry stored in dbm for [ENSG00000286948.1]
WARNING, no entry stored in dbm for [ENSG00000214514.8]
WARNING, no entry stored in dbm for [ENSG00000237978.6]
WARNING, no entry stored in dbm for [ENSG00000258171.2]
WARNING, no entry stored in dbm for [ENSG00000254266.6]
WARNING, no entry stored in dbm for [ENSG00000250412.1]
WARNING, no entry stored in dbm for [ENSG00000236048.2]
WARNING, no entry stored in dbm for [ENSG00000172297.7]
WARNING, no entry stored in dbm for [ENSG00000253954.3]
WARNING, no entry stored in dbm for [ENSG00000266402.3]
WARNING, no entry stored in dbm for [ENSG00000236438.7]
WARNING, no entry stored in dbm for [ENSG00000227893.1]
WARNING, no entry stored in dbm for [ENSG00000263766.5]
WARNING, no entry stored in dbm for [ENSG00000242808.10]
WARNING, no entry stored in dbm for [ENSG00000181984.11]
WARNING, no entry stored in dbm for [ENSG00000277741.4]
WARNING, no entry stored in dbm for [ENSG00000273888.1]
WARNING, no entry stored in dbm for [ENSG00000278881.2]
WARNING, no entry stored in dbm for [ENSG00000279035.1]
WARNING, no entry stored in dbm for [ENSG00000277737.3]
WARNING, no entry stored in dbm for [ENSG00000237238.3]
WARNING, no entry stored in dbm for [ENSG00000233109.4]
WARNING, no entry stored in dbm for [ENSG00000286162.2]
WARNING, no entry stored in dbm for [ENSG00000235908.1]
WARNING, no entry stored in dbm for [ENSG00000258454.1]
WARNING, no entry stored in dbm for [ENSG00000179523.5]
WARNING, no entry stored in dbm for [ENSG00000243276.6]
WARNING, no entry stored in dbm for [ENSG00000243701.7]
WARNING, no entry stored in dbm for [ENSG00000170629.14]
WARNING, no entry stored in dbm for [ENSG00000233548.1]
WARNING, no entry stored in dbm for [ENSG00000229357.1]
WARNING, no entry stored in dbm for [ENSG00000233548.1]
WARNING, no entry stored in dbm for [ENSG00000255444.1]
WARNING, no entry stored in dbm for [ENSG00000233025.1]
WARNING, no entry stored in dbm for [ENSG00000227484.1]
WARNING, no entry stored in dbm for [ENSG00000280262.1]
WARNING, no entry stored in dbm for [ENSG00000278932.4]
WARNING, no entry stored in dbm for [ENSG00000278932.4]
WARNING, no entry stored in dbm for [ENSG00000276257.1]
WARNING, no entry stored in dbm for [ENSG00000278932.4]
WARNING, no entry stored in dbm for [ENSG00000204790.9]
WARNING, no entry stored in dbm for [ENSG00000273509.1]
WARNING, no entry stored in dbm for [ENSG00000227582.2]
WARNING, no entry stored in dbm for [ENSG00000283541.1]
WARNING, no entry stored in dbm for [ENSG00000260896.6]
WARNING, no entry stored in dbm for [ENSG00000281490.1]
WARNING, no entry stored in dbm for [ENSG00000228887.3]
WARNING, no entry stored in dbm for [ENSG00000276832.2]
WARNING, no entry stored in dbm for [ENSG00000204790.9]
WARNING, no entry stored in dbm for [ENSG00000262772.2]
WARNING, no entry stored in dbm for [ENSG00000255347.1]
WARNING, no entry stored in dbm for [ENSG00000224186.8]
WARNING, no entry stored in dbm for [ENSG00000227742.2]
WARNING, no entry stored in dbm for [ENSG00000243099.1]
WARNING, no entry stored in dbm for [ENSG00000283541.1]
WARNING, no entry stored in dbm for [ENSG00000283541.1]
WARNING, no entry stored in dbm for [ENSG00000254186.3]
WARNING, no entry stored in dbm for [ENSG00000279022.1]
WARNING, no entry stored in dbm for [ENSG00000279022.1]
WARNING, no entry stored in dbm for [ENSG00000279022.1]
WARNING, no entry stored in dbm for [ENSG00000257086.1]
WARNING, no entry stored in dbm for [ENSG00000179967.11]
WARNING, no entry stored in dbm for [ENSG00000282965.1]
WARNING, no entry stored in dbm for [ENSG00000251297.1]
WARNING, no entry stored in dbm for [ENSG00000227757.3]
WARNING, no entry stored in dbm for [ENSG00000228160.2]
WARNING, no entry stored in dbm for [ENSG00000259984.1]
WARNING, no entry stored in dbm for [ENSG00000286550.1]
WARNING, no entry stored in dbm for [ENSG00000238085.1]
WARNING, no entry stored in dbm for [ENSG00000226532.1]
WARNING, no entry stored in dbm for [ENSG00000271860.7]
WARNING, no entry stored in dbm for [ENSG00000287933.1]
WARNING, no entry stored in dbm for [ENSG00000263301.1]
WARNING, no entry stored in dbm for [ENSG00000288583.1]
WARNING, no entry stored in dbm for [ENSG00000287368.1]
WARNING, no entry stored in dbm for [ENSG00000176320.2]
WARNING, no entry stored in dbm for [ENSG00000283773.1]
WARNING, no entry stored in dbm for [ENSG00000287449.1]
WARNING, no entry stored in dbm for [ENSG00000227240.2]
WARNING, no entry stored in dbm for [ENSG00000286071.1]
WARNING, no entry stored in dbm for [ENSG00000271335.6]
WARNING, no entry stored in dbm for [ENSG00000227486.2]
WARNING, no entry stored in dbm for [ENSG00000274760.1]
WARNING, no entry stored in dbm for [ENSG00000261641.2]
WARNING, no entry stored in dbm for [ENSG00000279526.1]
WARNING, no entry stored in dbm for [ENSG00000228274.4]
WARNING, no entry stored in dbm for [ENSG00000121089.4]
WARNING, no entry stored in dbm for [ENSG00000197358.9]
WARNING, no entry stored in dbm for [ENSG00000253500.6]
WARNING, no entry stored in dbm for [ENSG00000231507.2]
WARNING, no entry stored in dbm for [ENSG00000267135.2]
WARNING, no entry stored in dbm for [ENSG00000274177.1]
WARNING, no entry stored in dbm for [ENSG00000232320.6]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000251431.1]
WARNING, no entry stored in dbm for [ENSG00000259774.1]
WARNING, no entry stored in dbm for [ENSG00000259570.1]
WARNING, no entry stored in dbm for [ENSG00000284964.1]
WARNING, no entry stored in dbm for [ENSG00000274423.1]
WARNING, no entry stored in dbm for [ENSG00000284964.1]
WARNING, no entry stored in dbm for [ENSG00000250878.3]
WARNING, no entry stored in dbm for [ENSG00000275121.1]
WARNING, no entry stored in dbm for [ENSG00000225422.4]
WARNING, no entry stored in dbm for [ENSG00000260141.1]
WARNING, no entry stored in dbm for [ENSG00000260644.6]
WARNING, no entry stored in dbm for [ENSG00000256673.1]
WARNING, no entry stored in dbm for [ENSG00000260121.1]
WARNING, no entry stored in dbm for [ENSG00000249846.7]
WARNING, no entry stored in dbm for [ENSG00000260126.2]
WARNING, no entry stored in dbm for [ENSG00000254681.6]
WARNING, no entry stored in dbm for [ENSG00000279880.1]
WARNING, no entry stored in dbm for [ENSG00000237505.8]
WARNING, no entry stored in dbm for [ENSG00000279880.1]
WARNING, no entry stored in dbm for [ENSG00000272911.1]
WARNING, no entry stored in dbm for [ENSG00000260084.1]
WARNING, no entry stored in dbm for [ENSG00000284675.1]
WARNING, no entry stored in dbm for [ENSG00000231937.1]
WARNING, no entry stored in dbm for [ENSG00000277511.1]
WARNING, no entry stored in dbm for [ENSG00000250348.1]
WARNING, no entry stored in dbm for [ENSG00000241770.1]
WARNING, no entry stored in dbm for [ENSG00000254285.3]
WARNING, no entry stored in dbm for [ENSG00000287676.1]
WARNING, no entry stored in dbm for [ENSG00000286152.1]
WARNING, no entry stored in dbm for [ENSG00000249741.2]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000243916.1]
WARNING, no entry stored in dbm for [ENSG00000234686.1]
WARNING, no entry stored in dbm for [ENSG00000248714.7]
WARNING, no entry stored in dbm for [ENSG00000264151.6]
WARNING, no entry stored in dbm for [ENSG00000231329.8]
WARNING, no entry stored in dbm for [ENSG00000287993.1]
WARNING, no entry stored in dbm for [ENSG00000258778.2]
WARNING, no entry stored in dbm for [ENSG00000250131.2]
WARNING, no entry stored in dbm for [ENSG00000234129.8]
WARNING, no entry stored in dbm for [ENSG00000234129.8]
WARNING, no entry stored in dbm for [ENSG00000283483.1]
WARNING, no entry stored in dbm for [ENSG00000230224.1]
WARNING, no entry stored in dbm for [ENSG00000254248.1]
WARNING, no entry stored in dbm for [ENSG00000267711.1]
WARNING, no entry stored in dbm for [ENSG00000260958.3]
WARNING, no entry stored in dbm for [ENSG00000263657.1]
WARNING, no entry stored in dbm for [ENSG00000254444.1]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000242338.6]
WARNING, no entry stored in dbm for [ENSG00000272800.3]
WARNING, no entry stored in dbm for [ENSG00000269032.1]
WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000282393.1]
WARNING, no entry stored in dbm for [ENSG00000286283.1]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000186148.13]
WARNING, no entry stored in dbm for [ENSG00000270574.1]
WARNING, no entry stored in dbm for [ENSG00000286802.1]
WARNING, no entry stored in dbm for [ENSG00000282890.1]
WARNING, no entry stored in dbm for [ENSG00000068781.21]
WARNING, no entry stored in dbm for [ENSG00000224469.1]
WARNING, no entry stored in dbm for [ENSG00000279198.1]
WARNING, no entry stored in dbm for [ENSG00000224914.4]
WARNING, no entry stored in dbm for [ENSG00000257403.2]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000229321.2]
WARNING, no entry stored in dbm for [ENSG00000230189.7]
WARNING, no entry stored in dbm for [ENSG00000244510.2]
WARNING, no entry stored in dbm for [ENSG00000270453.1]
WARNING, no entry stored in dbm for [ENSG00000223544.1]
WARNING, no entry stored in dbm for [ENSG00000273314.1]
WARNING, no entry stored in dbm for [ENSG00000283662.1]
WARNING, no entry stored in dbm for [ENSG00000286883.1]
WARNING, no entry stored in dbm for [ENSG00000227042.1]
WARNING, no entry stored in dbm for [ENSG00000124097.7]
WARNING, no entry stored in dbm for [ENSG00000272601.1]
WARNING, no entry stored in dbm for [ENSG00000258711.2]


	* STAR-Fusion complete.  See output: /tmp/nxf.cPpwKSwF2i/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)