Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/45/503758169673f6b79761b4db9d3b84/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/b38af6262db7e116d178fda5bdd1a6/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/b38af6262db7e116d178fda5bdd1a6/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/c93cc63c632299d757d5b718ec0132/1173_FM_T1_RNA_SLD_01_A23T55JLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/0cf6d0e7955cd72469f6ddcad4be38/1173_FM_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
COL1A1--SLC45A4
starfusion
AC011603.2--ABR
starfusion
EXOC4--EXOC4
arriba
MAST2--IPP
arriba
TVP23C--CDRT4
arriba
0%| | 0/5 [00:00<?, ?it/s]
Processing COL1A1--SLC45A4: 0%| | 0/5 [00:00<?, ?it/s]
Processing COL1A1--SLC45A4: 20%|██ | 1/5 [00:00<00:00, 9.24it/s]
Processing AC011603.2--ABR: 20%|██ | 1/5 [00:00<00:00, 9.24it/s]
Processing AC011603.2--ABR: 40%|████ | 2/5 [00:00<00:00, 9.47it/s]
Processing EXOC4--EXOC4: 40%|████ | 2/5 [00:00<00:00, 9.47it/s]
Processing EXOC4--EXOC4: 60%|██████ | 3/5 [00:00<00:00, 9.55it/s]
Processing MAST2--IPP: 60%|██████ | 3/5 [00:00<00:00, 9.55it/s]
Processing MAST2--IPP: 80%|████████ | 4/5 [00:00<00:00, 9.58it/s]
Processing TVP23C--CDRT4: 80%|████████ | 4/5 [00:00<00:00, 9.58it/s]
Processing TVP23C--CDRT4: 100%|██████████| 5/5 [00:00<00:00, 9.60it/s]
Processing TVP23C--CDRT4: 100%|██████████| 5/5 [00:00<00:00, 9.55it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory