File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/863b1136f6fc9b62adf07451649a67/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:09:54
                             Started mapping on |	Jun 08 10:16:33
                                    Finished on |	Jun 08 11:14:52
       Mapping speed, Million of reads per hour |	303.68

                          Number of input reads |	295160414
                      Average input read length |	210
                                    UNIQUE READS:
                   Uniquely mapped reads number |	273833871
                        Uniquely mapped reads % |	92.77%
                          Average mapped length |	210.38
                       Number of splices: Total |	238187271
            Number of splices: Annotated (sjdb) |	235232991
                       Number of splices: GT/AG |	235563506
                       Number of splices: GC/AG |	1546653
                       Number of splices: AT/AC |	258033
               Number of splices: Non-canonical |	819079
                      Mismatch rate per base, % |	0.24%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.79
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.65
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	17115924
             % of reads mapped to multiple loci |	5.80%
        Number of reads mapped to too many loci |	805874
             % of reads mapped to too many loci |	0.27%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2960128
                 % of reads unmapped: too short |	1.00%
                Number of reads unmapped: other |	444617
                     % of reads unmapped: other |	0.15%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%