File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/d2646c65e711726585385b5da637e2/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:46:47
                             Started mapping on |	Jun 08 10:53:40
                                    Finished on |	Jun 08 11:41:23
       Mapping speed, Million of reads per hour |	370.79

                          Number of input reads |	294884170
                      Average input read length |	217
                                    UNIQUE READS:
                   Uniquely mapped reads number |	273599653
                        Uniquely mapped reads % |	92.78%
                          Average mapped length |	216.81
                       Number of splices: Total |	242990729
            Number of splices: Annotated (sjdb) |	239560563
                       Number of splices: GT/AG |	240208767
                       Number of splices: GC/AG |	1612596
                       Number of splices: AT/AC |	188618
               Number of splices: Non-canonical |	980748
                      Mismatch rate per base, % |	0.23%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.01
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.56
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	16441734
             % of reads mapped to multiple loci |	5.58%
        Number of reads mapped to too many loci |	1117397
             % of reads mapped to too many loci |	0.38%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	3302404
                 % of reads unmapped: too short |	1.12%
                Number of reads unmapped: other |	422982
                     % of reads unmapped: other |	0.14%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%