Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/ad00d91b871c77c26e40f9a6b6b84d/1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/e0588e3e0df2d45a98d8795b3bca3f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/e0588e3e0df2d45a98d8795b3bca3f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/9b2a39216732e94a63b9c756b6e117/1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 244364167
[W::hts_idx_load3] The index file is older than the data file: 1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	244364167
Known Splicing Events:	242398285
Partial Novel Splicing Events:	1121732
Novel Splicing Events:	759284
Filtered Splicing Events:	84866

Total splicing  Junctions:	342402
Known Splicing Junctions:	227392
Partial Novel Splicing Junctions:	70342
Novel Splicing Junctions:	44668

===================================================================
Create BED file ...
Create Interact file ...