Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/45/503758169673f6b79761b4db9d3b84/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/289abbfe5fc4d868c6f7d988f332a2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/289abbfe5fc4d868c6f7d988f332a2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/d866dd7ddc799e582bde6e9326a385/1173_DSO_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/92e1da03d5b106415b722be258df01/1173_DSO_T1_RNA_SLD_01_A23T55JLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
NKD1--AC138904.1
starfusion
arriba
NKD1--CARHSP1
starfusion
arriba
SUPV3L1--SPIDR
starfusion
arriba
BOLA2--AC025279.2
starfusion
arriba
SLC7A5P1--N4BP1
starfusion
arriba
ARHGAP21--TBC1D22A
starfusion
arriba
ADCY9--AC007610.5
starfusion
arriba
TLK2P1--AC110079.1
starfusion
AP1B1--GPAT4
starfusion
arriba
GUCY1B2--NKAIN2
starfusion
STX16--NPEPL1
starfusion
arriba
AC135050.3--SMG1P4
starfusion
MET--5_8S_rRNA
starfusion
GOLGA6L10--GOLGA2P6
starfusion
ZNF668--BCL7C
starfusion
NKD1--AC022167.4
arriba
NKD1--LITAFD
arriba
TVP23C--CDRT4
arriba
TBC1D22A--AC022535.3
arriba
TBC1D22A--AC022535.2
arriba
ADCY9--MSRB1
arriba
C16orf87--AC007493.1
arriba
ADCY9--AC007610.2
arriba
CRYZL2P--SEC16B
arriba
PANX2--AC090152.1
arriba
PANX2--AC087698.1
arriba

  0%|          | 0/26 [00:00<?, ?it/s]
Processing NKD1--AC138904.1:   0%|          | 0/26 [00:00<?, ?it/s]
Processing NKD1--AC138904.1:   4%|▍         | 1/26 [00:00<00:02,  9.20it/s]
Processing NKD1--CARHSP1:   4%|▍         | 1/26 [00:00<00:02,  9.20it/s]   
Processing NKD1--CARHSP1:   8%|▊         | 2/26 [00:00<00:02,  9.44it/s]
Processing SUPV3L1--SPIDR:   8%|▊         | 2/26 [00:00<00:02,  9.44it/s]
Processing SUPV3L1--SPIDR:  12%|█▏        | 3/26 [00:00<00:02,  9.52it/s]
Processing BOLA2--AC025279.2:  12%|█▏        | 3/26 [00:00<00:02,  9.52it/s]
Processing BOLA2--AC025279.2:  15%|█▌        | 4/26 [00:00<00:02,  9.56it/s]
Processing SLC7A5P1--N4BP1:  15%|█▌        | 4/26 [00:00<00:02,  9.56it/s]  
Processing SLC7A5P1--N4BP1:  19%|█▉        | 5/26 [00:00<00:02,  9.59it/s]
Processing ARHGAP21--TBC1D22A:  19%|█▉        | 5/26 [00:00<00:02,  9.59it/s]
Processing ARHGAP21--TBC1D22A:  23%|██▎       | 6/26 [00:00<00:02,  9.60it/s]
Processing ADCY9--AC007610.5:  23%|██▎       | 6/26 [00:00<00:02,  9.60it/s] 
Processing ADCY9--AC007610.5:  27%|██▋       | 7/26 [00:00<00:01,  9.61it/s]
Processing TLK2P1--AC110079.1:  27%|██▋       | 7/26 [00:00<00:01,  9.61it/s]
Processing TLK2P1--AC110079.1:  31%|███       | 8/26 [00:00<00:01,  9.62it/s]
Processing AP1B1--GPAT4:  31%|███       | 8/26 [00:00<00:01,  9.62it/s]      
Processing AP1B1--GPAT4:  35%|███▍      | 9/26 [00:00<00:01,  9.62it/s]
Processing GUCY1B2--NKAIN2:  35%|███▍      | 9/26 [00:00<00:01,  9.62it/s]
Processing GUCY1B2--NKAIN2:  38%|███▊      | 10/26 [00:01<00:01,  9.63it/s]
Processing STX16--NPEPL1:  38%|███▊      | 10/26 [00:01<00:01,  9.63it/s]  
Processing STX16--NPEPL1:  42%|████▏     | 11/26 [00:01<00:01,  9.63it/s]
Processing AC135050.3--SMG1P4:  42%|████▏     | 11/26 [00:01<00:01,  9.63it/s]
Processing AC135050.3--SMG1P4:  46%|████▌     | 12/26 [00:01<00:01,  9.63it/s]
Processing MET--5_8S_rRNA:  46%|████▌     | 12/26 [00:01<00:01,  9.63it/s]    
Processing MET--5_8S_rRNA:  50%|█████     | 13/26 [00:01<00:01,  9.63it/s]
Processing GOLGA6L10--GOLGA2P6:  50%|█████     | 13/26 [00:01<00:01,  9.63it/s]
Processing GOLGA6L10--GOLGA2P6:  54%|█████▍    | 14/26 [00:01<00:01,  9.63it/s]
Processing ZNF668--BCL7C:  54%|█████▍    | 14/26 [00:01<00:01,  9.63it/s]      
Processing ZNF668--BCL7C:  58%|█████▊    | 15/26 [00:01<00:01,  9.63it/s]
Processing NKD1--AC022167.4:  58%|█████▊    | 15/26 [00:01<00:01,  9.63it/s]
Processing NKD1--AC022167.4:  62%|██████▏   | 16/26 [00:01<00:01,  9.63it/s]
Processing NKD1--LITAFD:  62%|██████▏   | 16/26 [00:01<00:01,  9.63it/s]    
Processing NKD1--LITAFD:  65%|██████▌   | 17/26 [00:01<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  65%|██████▌   | 17/26 [00:01<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  69%|██████▉   | 18/26 [00:01<00:00,  9.63it/s]
Processing TBC1D22A--AC022535.3:  69%|██████▉   | 18/26 [00:01<00:00,  9.63it/s]
Processing TBC1D22A--AC022535.3:  73%|███████▎  | 19/26 [00:01<00:00,  9.64it/s]
Processing TBC1D22A--AC022535.2:  73%|███████▎  | 19/26 [00:01<00:00,  9.64it/s]
Processing TBC1D22A--AC022535.2:  77%|███████▋  | 20/26 [00:02<00:00,  9.63it/s]
Processing ADCY9--MSRB1:  77%|███████▋  | 20/26 [00:02<00:00,  9.63it/s]        
Processing ADCY9--MSRB1:  81%|████████  | 21/26 [00:02<00:00,  9.63it/s]
Processing C16orf87--AC007493.1:  81%|████████  | 21/26 [00:02<00:00,  9.63it/s]
Processing C16orf87--AC007493.1:  85%|████████▍ | 22/26 [00:02<00:00,  9.63it/s]
Processing ADCY9--AC007610.2:  85%|████████▍ | 22/26 [00:02<00:00,  9.63it/s]   
Processing ADCY9--AC007610.2:  88%|████████▊ | 23/26 [00:02<00:00,  9.64it/s]
Processing CRYZL2P--SEC16B:  88%|████████▊ | 23/26 [00:02<00:00,  9.64it/s]  
Processing CRYZL2P--SEC16B:  92%|█████████▏| 24/26 [00:02<00:00,  9.63it/s]
Processing PANX2--AC090152.1:  92%|█████████▏| 24/26 [00:02<00:00,  9.63it/s]
Processing PANX2--AC090152.1:  96%|█████████▌| 25/26 [00:02<00:00,  9.63it/s]
Processing PANX2--AC087698.1:  96%|█████████▌| 25/26 [00:02<00:00,  9.63it/s]
Processing PANX2--AC087698.1: 100%|██████████| 26/26 [00:02<00:00,  9.63it/s]
Processing PANX2--AC087698.1: 100%|██████████| 26/26 [00:02<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory