File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/70dce679887ab13d3c9a23a2d463ad/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 11:29:53
                             Started mapping on |	Jun 08 11:36:20
                                    Finished on |	Jun 08 12:21:27
       Mapping speed, Million of reads per hour |	392.83

                          Number of input reads |	295383588
                      Average input read length |	227
                                    UNIQUE READS:
                   Uniquely mapped reads number |	280261847
                        Uniquely mapped reads % |	94.88%
                          Average mapped length |	226.44
                       Number of splices: Total |	261649677
            Number of splices: Annotated (sjdb) |	256389318
                       Number of splices: GT/AG |	258739298
                       Number of splices: GC/AG |	1859804
                       Number of splices: AT/AC |	215138
               Number of splices: Non-canonical |	835437
                      Mismatch rate per base, % |	0.25%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.96
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.66
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	10677140
             % of reads mapped to multiple loci |	3.61%
        Number of reads mapped to too many loci |	397935
             % of reads mapped to too many loci |	0.13%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	3618020
                 % of reads unmapped: too short |	1.22%
                Number of reads unmapped: other |	428646
                     % of reads unmapped: other |	0.15%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%