Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/cae4e5b26350c919f8ae484a7a478e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/cae4e5b26350c919f8ae484a7a478e/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/211787f14a7c21941da074b08f2da7/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/29192fbdc33beb3b0c144bffc31841/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 122032931
[W::hts_idx_load3] The index file is older than the data file: 1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	122032931
Known Splicing Events:	120836918
Partial Novel Splicing Events:	711207
Novel Splicing Events:	442255
Filtered Splicing Events:	42551

Total splicing  Junctions:	330650
Known Splicing Junctions:	225655
Partial Novel Splicing Junctions:	68435
Novel Splicing Junctions:	36560

===================================================================
Create BED file ...
Create Interact file ...