File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/bb7c00ac97b36fce9affd865fee286/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (1173_9C_T1_RNA_SLD_01_A23T55JLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/5f8451e51760dec4d89d0d1d077e31/1173_9C_T1_RNA_SLD_01_A23T55JLT4_1.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/bb7c00ac97b36fce9affd865fee286/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/bb7c00ac97b36fce9affd865fee286/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/72d33ca11bbdd204fcadfe09b9eff3/1173_9C_T1_RNA_SLD_01_A23T55JLT4_1
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 1173_9C_T1_RNA_SLD_01_A23T55JLT4_1/abundance.h5
Successfully converted 1173_9C_T1_RNA_SLD_01_A23T55JLT4_1/abundance.h5 to 1173_9C_T1_RNA_SLD_01_A23T55JLT4_1_kallisto_mqc.tsv
  Sample: 1173_9C_T1_RNA_SLD_01_A23T55JLT4_1
  Mean Fragment Length: 112.5 bp
  Median Fragment Length: 107.0 bp
  pct_mito_est_counts: 0.009%
  pct_ribo_est_counts: 0.756%
  pct_hk_est_counts: 0.469%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.017%
  pct_ribo_tpm: 2.329%
  pct_hk_tpm: 0.717%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.006%