Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/1365c56ea9b2fcb40b71f892be20d7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/1365c56ea9b2fcb40b71f892be20d7/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/e5de859277930265b76da64ec36be5/1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/ee3f9484d3b7adee710b6e06bbf65b/1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1/abundance.h5
Successfully converted 1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1/abundance.h5 to 1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1_kallisto_mqc.tsv
  Sample: 1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1
  Mean Fragment Length: 124.8 bp
  Median Fragment Length: 115.0 bp
  pct_mito_est_counts: 0.013%
  pct_ribo_est_counts: 1.258%
  pct_hk_est_counts: 0.717%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.027%
  pct_ribo_tpm: 3.791%
  pct_hk_tpm: 1.031%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 5.624%