File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/37daf6a197e636299c209926226c82/.command.log
Size
2.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/b801a000ef526cbee5c0c72f92acaf/1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/45/503758169673f6b79761b4db9d3b84/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/37daf6a197e636299c209926226c82/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/37daf6a197e636299c209926226c82/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/86de2c2e528f6ca4622c97e3d5b31f/1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
TLK2P1--AC110079.1
starfusion
PLCB2--IGL@-ext
starfusion
TLK2--AC018638.8
starfusion
STX16--NPEPL1
starfusion
TRPM1--TRPM1
arriba
INPP5E--SEC16A
arriba
UBASH3B--MIR100HG
arriba
TVP23C--CDRT4
arriba

  0%|          | 0/8 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:   0%|          | 0/8 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:  12%|█▎        | 1/8 [00:00<00:00,  9.25it/s]
Processing PLCB2--IGL@-ext:  12%|█▎        | 1/8 [00:00<00:00,  9.25it/s]   
Processing PLCB2--IGL@-ext:  25%|██▌       | 2/8 [00:00<00:00,  9.47it/s]
Processing TLK2--AC018638.8:  25%|██▌       | 2/8 [00:00<00:00,  9.47it/s]
Processing TLK2--AC018638.8:  38%|███▊      | 3/8 [00:00<00:00,  9.55it/s]
Processing STX16--NPEPL1:  38%|███▊      | 3/8 [00:00<00:00,  9.55it/s]   
Processing STX16--NPEPL1:  50%|█████     | 4/8 [00:00<00:00,  9.58it/s]
Processing TRPM1--TRPM1:  50%|█████     | 4/8 [00:00<00:00,  9.58it/s] 
Processing TRPM1--TRPM1:  62%|██████▎   | 5/8 [00:00<00:00,  9.60it/s]
Processing INPP5E--SEC16A:  62%|██████▎   | 5/8 [00:00<00:00,  9.60it/s]
Processing INPP5E--SEC16A:  75%|███████▌  | 6/8 [00:00<00:00,  9.61it/s]
Processing UBASH3B--MIR100HG:  75%|███████▌  | 6/8 [00:00<00:00,  9.61it/s]
Processing UBASH3B--MIR100HG:  88%|████████▊ | 7/8 [00:00<00:00,  9.62it/s]
Processing TVP23C--CDRT4:  88%|████████▊ | 7/8 [00:00<00:00,  9.62it/s]    
Processing TVP23C--CDRT4: 100%|██████████| 8/8 [00:00<00:00,  9.63it/s]
Processing TVP23C--CDRT4: 100%|██████████| 8/8 [00:00<00:00,  9.59it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory