Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/5091309e106ccc905dde76e1cfd9ed/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/5091309e106ccc905dde76e1cfd9ed/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/19a2adb1e26fc72e356badf0995a93/1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1.md.bam --METRICS_FILE 1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:37:35.024 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:37:35 GMT 2026] MarkDuplicates --INPUT 1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1.md.bam --METRICS_FILE 1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:37:35 GMT 2026] Executing as ?@nf-b75091309e106ccc905dde76e1cfd9ed-a4a83-2nnh4 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:37:35 MarkDuplicates Start of doWork freeMemory: 105492120; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:37:35 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:37:35 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:37:39 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,313,078
INFO 2026-06-08 08:37:39 MarkDuplicates Tracking 3734 as yet unmatched pairs. 225 records in RAM.
INFO 2026-06-08 08:37:41 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,754,572
INFO 2026-06-08 08:37:41 MarkDuplicates Tracking 7554 as yet unmatched pairs. 284 records in RAM.
INFO 2026-06-08 08:37:44 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:6,333,556
INFO 2026-06-08 08:37:44 MarkDuplicates Tracking 11413 as yet unmatched pairs. 318 records in RAM.
INFO 2026-06-08 08:37:46 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:8,865,320
INFO 2026-06-08 08:37:46 MarkDuplicates Tracking 15207 as yet unmatched pairs. 678 records in RAM.
INFO 2026-06-08 08:37:48 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:11,026,818
INFO 2026-06-08 08:37:48 MarkDuplicates Tracking 18052 as yet unmatched pairs. 131 records in RAM.
INFO 2026-06-08 08:37:50 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:13,584,009
INFO 2026-06-08 08:37:50 MarkDuplicates Tracking 21453 as yet unmatched pairs. 95 records in RAM.
INFO 2026-06-08 08:37:52 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:16,393,299
INFO 2026-06-08 08:37:52 MarkDuplicates Tracking 24846 as yet unmatched pairs. 297 records in RAM.
INFO 2026-06-08 08:37:55 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:18,908,606
INFO 2026-06-08 08:37:55 MarkDuplicates Tracking 27823 as yet unmatched pairs. 150 records in RAM.
INFO 2026-06-08 08:37:57 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:19,682,526
INFO 2026-06-08 08:37:57 MarkDuplicates Tracking 31156 as yet unmatched pairs. 90 records in RAM.
INFO 2026-06-08 08:38:00 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:21,835,617
INFO 2026-06-08 08:38:00 MarkDuplicates Tracking 34835 as yet unmatched pairs. 562 records in RAM.
INFO 2026-06-08 08:38:02 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:22,865,061
INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 38184 as yet unmatched pairs. 296 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:24,159,507
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 40986 as yet unmatched pairs. 82 records in RAM.
INFO 2026-06-08 08:38:07 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:26,697,026
INFO 2026-06-08 08:38:07 MarkDuplicates Tracking 44283 as yet unmatched pairs. 301 records in RAM.
INFO 2026-06-08 08:38:09 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:27,838,764
INFO 2026-06-08 08:38:09 MarkDuplicates Tracking 47411 as yet unmatched pairs. 130 records in RAM.
INFO 2026-06-08 08:38:11 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:31,426,712
INFO 2026-06-08 08:38:11 MarkDuplicates Tracking 51047 as yet unmatched pairs. 505 records in RAM.
INFO 2026-06-08 08:38:12 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:32,672,790
INFO 2026-06-08 08:38:12 MarkDuplicates Tracking 54353 as yet unmatched pairs. 567 records in RAM.
INFO 2026-06-08 08:38:14 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:35,190,791
INFO 2026-06-08 08:38:14 MarkDuplicates Tracking 57916 as yet unmatched pairs. 625 records in RAM.
INFO 2026-06-08 08:38:16 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:36,464,144
INFO 2026-06-08 08:38:16 MarkDuplicates Tracking 60917 as yet unmatched pairs. 120 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:39,575,802
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 64350 as yet unmatched pairs. 575 records in RAM.
INFO 2026-06-08 08:38:20 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:43,359,267
INFO 2026-06-08 08:38:20 MarkDuplicates Tracking 67556 as yet unmatched pairs. 514 records in RAM.
INFO 2026-06-08 08:38:22 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:43,671,762
INFO 2026-06-08 08:38:22 MarkDuplicates Tracking 70834 as yet unmatched pairs. 168 records in RAM.
INFO 2026-06-08 08:38:25 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:45,615,316
INFO 2026-06-08 08:38:25 MarkDuplicates Tracking 73947 as yet unmatched pairs. 141 records in RAM.
INFO 2026-06-08 08:38:28 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:47,334,079
INFO 2026-06-08 08:38:28 MarkDuplicates Tracking 77706 as yet unmatched pairs. 627 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 2s. Last read position: chr1:54,200,288
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 80930 as yet unmatched pairs. 766 records in RAM.
INFO 2026-06-08 08:38:32 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:61,833,674
INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 83802 as yet unmatched pairs. 500 records in RAM.
INFO 2026-06-08 08:38:34 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:77,632,322
INFO 2026-06-08 08:38:34 MarkDuplicates Tracking 86293 as yet unmatched pairs. 240 records in RAM.
INFO 2026-06-08 08:38:36 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:88,740,987
INFO 2026-06-08 08:38:36 MarkDuplicates Tracking 88926 as yet unmatched pairs. 105 records in RAM.
INFO 2026-06-08 08:38:38 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:96,785,113
INFO 2026-06-08 08:38:38 MarkDuplicates Tracking 91685 as yet unmatched pairs. 99 records in RAM.
INFO 2026-06-08 08:38:40 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 2s. Last read position: chr1:109,630,322
INFO 2026-06-08 08:38:40 MarkDuplicates Tracking 94805 as yet unmatched pairs. 246 records in RAM.
INFO 2026-06-08 08:38:41 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:112,524,508
INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 97872 as yet unmatched pairs. 96 records in RAM.
INFO 2026-06-08 08:38:43 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:114,421,614
INFO 2026-06-08 08:38:43 MarkDuplicates Tracking 101105 as yet unmatched pairs. 395 records in RAM.
INFO 2026-06-08 08:38:46 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 2s. Last read position: chr1:117,954,035
INFO 2026-06-08 08:38:46 MarkDuplicates Tracking 103888 as yet unmatched pairs. 143 records in RAM.
INFO 2026-06-08 08:38:48 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 2s. Last read position: chr1:121,116,981
INFO 2026-06-08 08:38:48 MarkDuplicates Tracking 106201 as yet unmatched pairs. 50 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:147,179,357
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 107734 as yet unmatched pairs. 70 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:149,508,628
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 109112 as yet unmatched pairs. 59 records in RAM.
INFO 2026-06-08 08:38:53 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:149,852,726
INFO 2026-06-08 08:38:53 MarkDuplicates Tracking 112022 as yet unmatched pairs. 453 records in RAM.
INFO 2026-06-08 08:38:54 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:150,557,206
INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 114042 as yet unmatched pairs. 107 records in RAM.
INFO 2026-06-08 08:38:56 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:151,366,258
INFO 2026-06-08 08:38:56 MarkDuplicates Tracking 117322 as yet unmatched pairs. 317 records in RAM.
INFO 2026-06-08 08:38:58 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 2s. Last read position: chr1:153,853,095
INFO 2026-06-08 08:38:58 MarkDuplicates Tracking 120154 as yet unmatched pairs. 103 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:154,183,058
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 123115 as yet unmatched pairs. 48 records in RAM.
INFO 2026-06-08 08:39:02 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:155,015,788
INFO 2026-06-08 08:39:02 MarkDuplicates Tracking 126646 as yet unmatched pairs. 497 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:155,337,564
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 129507 as yet unmatched pairs. 153 records in RAM.
INFO 2026-06-08 08:39:05 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:156,115,082
INFO 2026-06-08 08:39:05 MarkDuplicates Tracking 134810 as yet unmatched pairs. 2456 records in RAM.
INFO 2026-06-08 08:39:07 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:156,333,547
INFO 2026-06-08 08:39:07 MarkDuplicates Tracking 136615 as yet unmatched pairs. 405 records in RAM.
INFO 2026-06-08 08:39:09 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:159,943,452
INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 139348 as yet unmatched pairs. 49 records in RAM.
INFO 2026-06-08 08:39:12 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:161,752,393
INFO 2026-06-08 08:39:12 MarkDuplicates Tracking 142358 as yet unmatched pairs. 60 records in RAM.
INFO 2026-06-08 08:39:14 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:169,127,384
INFO 2026-06-08 08:39:14 MarkDuplicates Tracking 147164 as yet unmatched pairs. 1764 records in RAM.
INFO 2026-06-08 08:39:16 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:175,008,650
INFO 2026-06-08 08:39:16 MarkDuplicates Tracking 148357 as yet unmatched pairs. 196 records in RAM.
INFO 2026-06-08 08:39:18 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 2s. Last read position: chr1:183,541,076
INFO 2026-06-08 08:39:18 MarkDuplicates Tracking 151528 as yet unmatched pairs. 194 records in RAM.
INFO 2026-06-08 08:39:19 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:186,676,842
INFO 2026-06-08 08:39:19 MarkDuplicates Tracking 154210 as yet unmatched pairs. 51 records in RAM.
INFO 2026-06-08 08:39:22 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr1:201,957,296
INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 157438 as yet unmatched pairs. 116 records in RAM.
INFO 2026-06-08 08:39:24 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 2s. Last read position: chr1:204,228,759
INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 160546 as yet unmatched pairs. 149 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:206,929,191
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 163619 as yet unmatched pairs. 66 records in RAM.
INFO 2026-06-08 08:39:27 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:206,935,573
INFO 2026-06-08 08:39:27 MarkDuplicates Tracking 172267 as yet unmatched pairs. 5526 records in RAM.
INFO 2026-06-08 08:39:30 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 2s. Last read position: chr1:207,023,031
INFO 2026-06-08 08:39:30 MarkDuplicates Tracking 169999 as yet unmatched pairs. 175 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr1:214,383,972
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 173178 as yet unmatched pairs. 158 records in RAM.
INFO 2026-06-08 08:39:34 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 2s. Last read position: chr1:224,404,431
INFO 2026-06-08 08:39:34 MarkDuplicates Tracking 176043 as yet unmatched pairs. 193 records in RAM.
INFO 2026-06-08 08:39:36 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 2s. Last read position: chr1:228,097,126
INFO 2026-06-08 08:39:36 MarkDuplicates Tracking 179388 as yet unmatched pairs. 462 records in RAM.
INFO 2026-06-08 08:39:39 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 2s. Last read position: chr1:230,868,360
INFO 2026-06-08 08:39:39 MarkDuplicates Tracking 182832 as yet unmatched pairs. 111 records in RAM.
INFO 2026-06-08 08:39:41 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 2s. Last read position: chr1:236,029,563
INFO 2026-06-08 08:39:41 MarkDuplicates Tracking 186732 as yet unmatched pairs. 170 records in RAM.
INFO 2026-06-08 08:39:43 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr1:246,726,974
INFO 2026-06-08 08:39:43 MarkDuplicates Tracking 189962 as yet unmatched pairs. 179 records in RAM.
INFO 2026-06-08 08:39:46 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 3s. Last read position: chr2:9,587,415
INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 193297 as yet unmatched pairs. 192064 records in RAM.
INFO 2026-06-08 08:39:48 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:20,203,991
INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 197423 as yet unmatched pairs. 196178 records in RAM.
INFO 2026-06-08 08:39:50 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:26,191,575
INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 199666 as yet unmatched pairs. 198408 records in RAM.
INFO 2026-06-08 08:39:52 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 2s. Last read position: chr2:27,434,752
INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 203123 as yet unmatched pairs. 201856 records in RAM.
INFO 2026-06-08 08:39:54 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:32,509,802
INFO 2026-06-08 08:39:54 MarkDuplicates Tracking 206280 as yet unmatched pairs. 204991 records in RAM.
INFO 2026-06-08 08:39:56 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,259
INFO 2026-06-08 08:39:56 MarkDuplicates Tracking 322581 as yet unmatched pairs. 197454 records in RAM.
INFO 2026-06-08 08:39:58 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:39:58 MarkDuplicates Tracking 629189 as yet unmatched pairs. 177259 records in RAM.
INFO 2026-06-08 08:40:01 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 1256465 as yet unmatched pairs. 135616 records in RAM.
INFO 2026-06-08 08:40:03 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,405
INFO 2026-06-08 08:40:03 MarkDuplicates Tracking 1657531 as yet unmatched pairs. 108706 records in RAM.
INFO 2026-06-08 08:40:05 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 1667418 as yet unmatched pairs. 108102 records in RAM.
INFO 2026-06-08 08:40:06 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,412
INFO 2026-06-08 08:40:06 MarkDuplicates Tracking 1719154 as yet unmatched pairs. 104914 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:38,591,550
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 1786526 as yet unmatched pairs. 98202 records in RAM.
INFO 2026-06-08 08:40:10 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:43,226,292
INFO 2026-06-08 08:40:10 MarkDuplicates Tracking 1783057 as yet unmatched pairs. 94719 records in RAM.
INFO 2026-06-08 08:40:12 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 2s. Last read position: chr2:47,373,928
INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 1780276 as yet unmatched pairs. 91916 records in RAM.
INFO 2026-06-08 08:40:14 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:54,653,700
INFO 2026-06-08 08:40:14 MarkDuplicates Tracking 1777233 as yet unmatched pairs. 88861 records in RAM.
INFO 2026-06-08 08:40:16 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 2s. Last read position: chr2:61,496,935
INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 1774011 as yet unmatched pairs. 85627 records in RAM.
INFO 2026-06-08 08:40:17 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:69,496,008
INFO 2026-06-08 08:40:17 MarkDuplicates Tracking 1770903 as yet unmatched pairs. 82497 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:73,859,265
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 1767957 as yet unmatched pairs. 79532 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 2s. Last read position: chr2:74,886,524
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 1764392 as yet unmatched pairs. 75954 records in RAM.
INFO 2026-06-08 08:40:23 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:85,327,353
INFO 2026-06-08 08:40:23 MarkDuplicates Tracking 1761620 as yet unmatched pairs. 73167 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 2s. Last read position: chr2:87,782,995
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 1758903 as yet unmatched pairs. 70425 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:96,762,037
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 1756176 as yet unmatched pairs. 67678 records in RAM.
INFO 2026-06-08 08:40:30 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 2s. Last read position: chr2:101,825,313
INFO 2026-06-08 08:40:30 MarkDuplicates Tracking 1752998 as yet unmatched pairs. 64486 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:108,765,541
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 1752349 as yet unmatched pairs. 63822 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:111,815,612
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 1748860 as yet unmatched pairs. 60321 records in RAM.
INFO 2026-06-08 08:40:36 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 2s. Last read position: chr2:119,371,188
INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 1746502 as yet unmatched pairs. 57947 records in RAM.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:130,152,822
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 1743298 as yet unmatched pairs. 54729 records in RAM.
INFO 2026-06-08 08:40:40 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 2s. Last read position: chr2:148,483,403
INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 1740235 as yet unmatched pairs. 51635 records in RAM.
INFO 2026-06-08 08:40:43 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 2s. Last read position: chr2:161,994,967
INFO 2026-06-08 08:40:43 MarkDuplicates Tracking 1737374 as yet unmatched pairs. 48752 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:173,918,700
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 1734880 as yet unmatched pairs. 46223 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:181,531,747
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 1731979 as yet unmatched pairs. 43307 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 2s. Last read position: chr2:189,001,419
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 1729666 as yet unmatched pairs. 40987 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:190,962,871
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 1725324 as yet unmatched pairs. 36638 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:200,472,903
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 1722557 as yet unmatched pairs. 33832 records in RAM.
INFO 2026-06-08 08:40:54 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 2s. Last read position: chr2:206,004,869
INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 1719899 as yet unmatched pairs. 31143 records in RAM.
INFO 2026-06-08 08:40:56 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:215,370,394
INFO 2026-06-08 08:40:56 MarkDuplicates Tracking 1719387 as yet unmatched pairs. 30611 records in RAM.
INFO 2026-06-08 08:40:58 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,185
INFO 2026-06-08 08:40:58 MarkDuplicates Tracking 1715446 as yet unmatched pairs. 26645 records in RAM.
INFO 2026-06-08 08:41:00 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 2s. Last read position: chr2:216,694,663
INFO 2026-06-08 08:41:00 MarkDuplicates Tracking 1711334 as yet unmatched pairs. 22526 records in RAM.
INFO 2026-06-08 08:41:02 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 2s. Last read position: chr2:219,172,663
INFO 2026-06-08 08:41:02 MarkDuplicates Tracking 1708495 as yet unmatched pairs. 19678 records in RAM.
INFO 2026-06-08 08:41:03 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr2:226,796,315
INFO 2026-06-08 08:41:03 MarkDuplicates Tracking 1704680 as yet unmatched pairs. 15804 records in RAM.
INFO 2026-06-08 08:41:06 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 2s. Last read position: chr2:231,455,219
INFO 2026-06-08 08:41:06 MarkDuplicates Tracking 1701720 as yet unmatched pairs. 12811 records in RAM.
INFO 2026-06-08 08:41:08 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 2s. Last read position: chr2:233,853,867
INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 1698955 as yet unmatched pairs. 10034 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr2:237,749,226
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 1695323 as yet unmatched pairs. 6372 records in RAM.
INFO 2026-06-08 08:41:12 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 2s. Last read position: chr2:241,233,945
INFO 2026-06-08 08:41:12 MarkDuplicates Tracking 1691766 as yet unmatched pairs. 2796 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 4s. Last read position: chr3:9,429,834
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 1688282 as yet unmatched pairs. 82946 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 2s. Last read position: chr3:12,153,698
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 1684908 as yet unmatched pairs. 79559 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 2s. Last read position: chr3:15,712,169
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 1681845 as yet unmatched pairs. 76477 records in RAM.
INFO 2026-06-08 08:41:23 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:33,535,245
INFO 2026-06-08 08:41:23 MarkDuplicates Tracking 1678724 as yet unmatched pairs. 73323 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:39,407,749
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 1676163 as yet unmatched pairs. 70744 records in RAM.
INFO 2026-06-08 08:41:26 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:44,945,180
INFO 2026-06-08 08:41:26 MarkDuplicates Tracking 1672696 as yet unmatched pairs. 67259 records in RAM.
INFO 2026-06-08 08:41:28 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:47,426,049
INFO 2026-06-08 08:41:28 MarkDuplicates Tracking 1669325 as yet unmatched pairs. 63868 records in RAM.
INFO 2026-06-08 08:41:30 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:48,600,083
INFO 2026-06-08 08:41:30 MarkDuplicates Tracking 1666176 as yet unmatched pairs. 60702 records in RAM.
INFO 2026-06-08 08:41:32 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:49,305,824
INFO 2026-06-08 08:41:32 MarkDuplicates Tracking 1662463 as yet unmatched pairs. 56979 records in RAM.
INFO 2026-06-08 08:41:34 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:50,353,630
INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 1659086 as yet unmatched pairs. 53582 records in RAM.
INFO 2026-06-08 08:41:36 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:52,519,513
INFO 2026-06-08 08:41:36 MarkDuplicates Tracking 1655799 as yet unmatched pairs. 50276 records in RAM.
INFO 2026-06-08 08:41:38 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 2s. Last read position: chr3:58,121,284
INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 1653265 as yet unmatched pairs. 47716 records in RAM.
INFO 2026-06-08 08:41:40 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 2s. Last read position: chr3:70,977,855
INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 1649969 as yet unmatched pairs. 44372 records in RAM.
INFO 2026-06-08 08:41:42 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:101,576,839
INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 1647300 as yet unmatched pairs. 41680 records in RAM.
INFO 2026-06-08 08:41:44 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr3:119,438,041
INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 1644566 as yet unmatched pairs. 38909 records in RAM.
INFO 2026-06-08 08:41:46 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 2s. Last read position: chr3:123,700,763
INFO 2026-06-08 08:41:46 MarkDuplicates Tracking 1641650 as yet unmatched pairs. 35967 records in RAM.
INFO 2026-06-08 08:41:48 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 2s. Last read position: chr3:127,821,693
INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 1638675 as yet unmatched pairs. 32953 records in RAM.
INFO 2026-06-08 08:41:50 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr3:129,606,329
INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 1635359 as yet unmatched pairs. 29617 records in RAM.
INFO 2026-06-08 08:41:51 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr3:139,627,606
INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 1632079 as yet unmatched pairs. 26317 records in RAM.
INFO 2026-06-08 08:41:54 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr3:150,581,690
INFO 2026-06-08 08:41:54 MarkDuplicates Tracking 1629002 as yet unmatched pairs. 23212 records in RAM.
INFO 2026-06-08 08:41:56 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 2s. Last read position: chr3:169,812,492
INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 1626001 as yet unmatched pairs. 20180 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 2s. Last read position: chr3:183,508,128
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 1623276 as yet unmatched pairs. 17428 records in RAM.
INFO 2026-06-08 08:42:01 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 2s. Last read position: chr3:184,325,083
INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 1620657 as yet unmatched pairs. 14794 records in RAM.
INFO 2026-06-08 08:42:03 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 2s. Last read position: chr3:188,609,220
INFO 2026-06-08 08:42:03 MarkDuplicates Tracking 1619109 as yet unmatched pairs. 13218 records in RAM.
INFO 2026-06-08 08:42:05 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr3:195,661,832
INFO 2026-06-08 08:42:05 MarkDuplicates Tracking 1614590 as yet unmatched pairs. 8675 records in RAM.
INFO 2026-06-08 08:42:07 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr3:195,779,497
INFO 2026-06-08 08:42:07 MarkDuplicates Tracking 1614455 as yet unmatched pairs. 8530 records in RAM.
INFO 2026-06-08 08:42:09 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr3:195,782,707
INFO 2026-06-08 08:42:09 MarkDuplicates Tracking 1614613 as yet unmatched pairs. 8684 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr3:195,786,704
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 1611155 as yet unmatched pairs. 5223 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr3:196,074,061
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 1608612 as yet unmatched pairs. 2673 records in RAM.
INFO 2026-06-08 08:42:15 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 2s. Last read position: chr4:967,218
INFO 2026-06-08 08:42:15 MarkDuplicates Tracking 1604751 as yet unmatched pairs. 49193 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr4:1,808,724
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 1600872 as yet unmatched pairs. 45300 records in RAM.
INFO 2026-06-08 08:42:18 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr4:6,674,519
INFO 2026-06-08 08:42:18 MarkDuplicates Tracking 1597429 as yet unmatched pairs. 41832 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr4:17,961,961
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 1594446 as yet unmatched pairs. 38829 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr4:39,927,962
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 1591450 as yet unmatched pairs. 35813 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 2s. Last read position: chr4:54,278,373
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 1588571 as yet unmatched pairs. 32909 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr4:70,656,316
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 1585968 as yet unmatched pairs. 30285 records in RAM.
INFO 2026-06-08 08:42:28 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 2s. Last read position: chr4:75,592,232
INFO 2026-06-08 08:42:28 MarkDuplicates Tracking 1582036 as yet unmatched pairs. 26341 records in RAM.
INFO 2026-06-08 08:42:31 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 2s. Last read position: chr4:81,427,782
INFO 2026-06-08 08:42:31 MarkDuplicates Tracking 1578999 as yet unmatched pairs. 23292 records in RAM.
INFO 2026-06-08 08:42:32 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr4:88,056,131
INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 1576267 as yet unmatched pairs. 20532 records in RAM.
INFO 2026-06-08 08:42:35 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 2s. Last read position: chr4:103,106,190
INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 1573217 as yet unmatched pairs. 17463 records in RAM.
INFO 2026-06-08 08:42:37 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 2s. Last read position: chr4:118,757,826
INFO 2026-06-08 08:42:37 MarkDuplicates Tracking 1570536 as yet unmatched pairs. 14764 records in RAM.
INFO 2026-06-08 08:42:39 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr4:138,248,126
INFO 2026-06-08 08:42:39 MarkDuplicates Tracking 1567581 as yet unmatched pairs. 11789 records in RAM.
INFO 2026-06-08 08:42:41 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 2s. Last read position: chr4:148,436,744
INFO 2026-06-08 08:42:41 MarkDuplicates Tracking 1565168 as yet unmatched pairs. 9334 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr4:158,155,790
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 1562471 as yet unmatched pairs. 6605 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr4:183,692,995
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 1559158 as yet unmatched pairs. 3260 records in RAM.
INFO 2026-06-08 08:42:47 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr4:186,708,239
INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 1556542 as yet unmatched pairs. 627 records in RAM.
INFO 2026-06-08 08:42:50 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 2s. Last read position: chr5:1,335,161
INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 1553139 as yet unmatched pairs. 78458 records in RAM.
INFO 2026-06-08 08:42:52 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:14,336,662
INFO 2026-06-08 08:42:52 MarkDuplicates Tracking 1550728 as yet unmatched pairs. 76033 records in RAM.
INFO 2026-06-08 08:42:54 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 2s. Last read position: chr5:14,755,875
INFO 2026-06-08 08:42:54 MarkDuplicates Tracking 1546381 as yet unmatched pairs. 71670 records in RAM.
INFO 2026-06-08 08:42:56 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:37,026,258
INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 1543639 as yet unmatched pairs. 68902 records in RAM.
INFO 2026-06-08 08:42:58 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 2s. Last read position: chr5:55,964,194
INFO 2026-06-08 08:42:58 MarkDuplicates Tracking 1540777 as yet unmatched pairs. 66030 records in RAM.
INFO 2026-06-08 08:42:59 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:70,109,254
INFO 2026-06-08 08:42:59 MarkDuplicates Tracking 1538272 as yet unmatched pairs. 63514 records in RAM.
INFO 2026-06-08 08:43:02 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr5:76,588,944
INFO 2026-06-08 08:43:02 MarkDuplicates Tracking 1535740 as yet unmatched pairs. 60970 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 2s. Last read position: chr5:90,485,557
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 1532762 as yet unmatched pairs. 57976 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr5:108,381,113
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 1529923 as yet unmatched pairs. 55111 records in RAM.
INFO 2026-06-08 08:43:08 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 2s. Last read position: chr5:126,577,538
INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 1527025 as yet unmatched pairs. 52197 records in RAM.
INFO 2026-06-08 08:43:10 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 2s. Last read position: chr5:132,752,019
INFO 2026-06-08 08:43:10 MarkDuplicates Tracking 1523637 as yet unmatched pairs. 48792 records in RAM.
INFO 2026-06-08 08:43:13 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 2s. Last read position: chr5:135,369,421
INFO 2026-06-08 08:43:13 MarkDuplicates Tracking 1520464 as yet unmatched pairs. 45609 records in RAM.
INFO 2026-06-08 08:43:15 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 2s. Last read position: chr5:138,827,568
INFO 2026-06-08 08:43:15 MarkDuplicates Tracking 1517528 as yet unmatched pairs. 42663 records in RAM.
INFO 2026-06-08 08:43:17 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 2s. Last read position: chr5:140,677,379
INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 1514303 as yet unmatched pairs. 39328 records in RAM.
INFO 2026-06-08 08:43:19 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr5:141,864,128
INFO 2026-06-08 08:43:19 MarkDuplicates Tracking 1511165 as yet unmatched pairs. 36182 records in RAM.
INFO 2026-06-08 08:43:21 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr5:149,520,377
INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 1509028 as yet unmatched pairs. 34028 records in RAM.
INFO 2026-06-08 08:43:23 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 2s. Last read position: chr5:150,364,144
INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 1504632 as yet unmatched pairs. 29621 records in RAM.
INFO 2026-06-08 08:43:25 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 2s. Last read position: chr5:150,648,635
INFO 2026-06-08 08:43:25 MarkDuplicates Tracking 1501450 as yet unmatched pairs. 26428 records in RAM.
INFO 2026-06-08 08:43:27 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr5:154,803,538
INFO 2026-06-08 08:43:27 MarkDuplicates Tracking 1498154 as yet unmatched pairs. 23110 records in RAM.
INFO 2026-06-08 08:43:29 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr5:168,497,255
INFO 2026-06-08 08:43:29 MarkDuplicates Tracking 1495196 as yet unmatched pairs. 20134 records in RAM.
INFO 2026-06-08 08:43:31 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr5:172,106,632
INFO 2026-06-08 08:43:31 MarkDuplicates Tracking 1492627 as yet unmatched pairs. 17554 records in RAM.
INFO 2026-06-08 08:43:33 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr5:177,210,940
INFO 2026-06-08 08:43:33 MarkDuplicates Tracking 1489502 as yet unmatched pairs. 14410 records in RAM.
INFO 2026-06-08 08:43:35 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr5:178,210,619
INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 1486522 as yet unmatched pairs. 11424 records in RAM.
INFO 2026-06-08 08:43:37 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 2s. Last read position: chr5:179,801,587
INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 1482812 as yet unmatched pairs. 7704 records in RAM.
INFO 2026-06-08 08:43:40 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 2s. Last read position: chr5:179,833,674
INFO 2026-06-08 08:43:40 MarkDuplicates Tracking 1481458 as yet unmatched pairs. 6348 records in RAM.
INFO 2026-06-08 08:43:42 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr5:181,239,066
INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 1477793 as yet unmatched pairs. 2671 records in RAM.
INFO 2026-06-08 08:43:45 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 3s. Last read position: chr6:4,892,295
INFO 2026-06-08 08:43:45 MarkDuplicates Tracking 1472777 as yet unmatched pairs. 93743 records in RAM.
INFO 2026-06-08 08:43:47 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 2s. Last read position: chr6:7,579,424
INFO 2026-06-08 08:43:47 MarkDuplicates Tracking 1469145 as yet unmatched pairs. 90097 records in RAM.
INFO 2026-06-08 08:43:49 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:17,781,281
INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 1465951 as yet unmatched pairs. 86879 records in RAM.
INFO 2026-06-08 08:43:51 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:26,156,346
INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 1462962 as yet unmatched pairs. 83876 records in RAM.
INFO 2026-06-08 08:43:53 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:27,146,499
INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 1459574 as yet unmatched pairs. 80486 records in RAM.
INFO 2026-06-08 08:43:55 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr6:28,904,569
INFO 2026-06-08 08:43:55 MarkDuplicates Tracking 1455887 as yet unmatched pairs. 76795 records in RAM.
INFO 2026-06-08 08:43:57 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr6:30,603,245
INFO 2026-06-08 08:43:57 MarkDuplicates Tracking 1453124 as yet unmatched pairs. 74021 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr6:31,270,278
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 1452720 as yet unmatched pairs. 73613 records in RAM.
INFO 2026-06-08 08:44:01 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:31,631,355
INFO 2026-06-08 08:44:01 MarkDuplicates Tracking 1446872 as yet unmatched pairs. 67746 records in RAM.
INFO 2026-06-08 08:44:03 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 2s. Last read position: chr6:31,779,223
INFO 2026-06-08 08:44:03 MarkDuplicates Tracking 1443323 as yet unmatched pairs. 64182 records in RAM.
INFO 2026-06-08 08:44:04 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr6:31,864,824
INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 1441791 as yet unmatched pairs. 62643 records in RAM.
INFO 2026-06-08 08:44:06 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr6:32,201,285
INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 1438159 as yet unmatched pairs. 59007 records in RAM.
INFO 2026-06-08 08:44:08 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:33,276,217
INFO 2026-06-08 08:44:08 MarkDuplicates Tracking 1435589 as yet unmatched pairs. 56429 records in RAM.
INFO 2026-06-08 08:44:10 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr6:33,672,072
INFO 2026-06-08 08:44:10 MarkDuplicates Tracking 1432062 as yet unmatched pairs. 52898 records in RAM.
INFO 2026-06-08 08:44:13 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 2s. Last read position: chr6:35,580,161
INFO 2026-06-08 08:44:13 MarkDuplicates Tracking 1428209 as yet unmatched pairs. 49024 records in RAM.
INFO 2026-06-08 08:44:16 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 2s. Last read position: chr6:41,653,347
INFO 2026-06-08 08:44:16 MarkDuplicates Tracking 1425141 as yet unmatched pairs. 45934 records in RAM.
INFO 2026-06-08 08:44:17 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr6:43,226,049
INFO 2026-06-08 08:44:17 MarkDuplicates Tracking 1422075 as yet unmatched pairs. 42861 records in RAM.
INFO 2026-06-08 08:44:19 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr6:44,305,075
INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 1418538 as yet unmatched pairs. 39312 records in RAM.
INFO 2026-06-08 08:44:21 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr6:56,541,137
INFO 2026-06-08 08:44:21 MarkDuplicates Tracking 1415785 as yet unmatched pairs. 36495 records in RAM.
INFO 2026-06-08 08:44:23 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr6:75,130,959
INFO 2026-06-08 08:44:23 MarkDuplicates Tracking 1413201 as yet unmatched pairs. 33888 records in RAM.
INFO 2026-06-08 08:44:25 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr6:85,612,913
INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 1410339 as yet unmatched pairs. 31016 records in RAM.
INFO 2026-06-08 08:44:27 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr6:100,661,806
INFO 2026-06-08 08:44:27 MarkDuplicates Tracking 1407206 as yet unmatched pairs. 27869 records in RAM.
INFO 2026-06-08 08:44:29 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr6:109,129,388
INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 1404165 as yet unmatched pairs. 24812 records in RAM.
INFO 2026-06-08 08:44:31 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr6:117,519,853
INFO 2026-06-08 08:44:31 MarkDuplicates Tracking 1400986 as yet unmatched pairs. 21607 records in RAM.
INFO 2026-06-08 08:44:33 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 2s. Last read position: chr6:131,950,389
INFO 2026-06-08 08:44:33 MarkDuplicates Tracking 1398403 as yet unmatched pairs. 19002 records in RAM.
INFO 2026-06-08 08:44:35 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr6:137,879,035
INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 1395414 as yet unmatched pairs. 16001 records in RAM.
INFO 2026-06-08 08:44:37 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr6:144,557,180
INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 1391969 as yet unmatched pairs. 12548 records in RAM.
INFO 2026-06-08 08:44:38 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr6:154,832,004
INFO 2026-06-08 08:44:38 MarkDuplicates Tracking 1389012 as yet unmatched pairs. 9569 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 2s. Last read position: chr6:158,771,398
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 1386136 as yet unmatched pairs. 6683 records in RAM.
INFO 2026-06-08 08:44:43 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr6:166,365,418
INFO 2026-06-08 08:44:43 MarkDuplicates Tracking 1382320 as yet unmatched pairs. 2859 records in RAM.
INFO 2026-06-08 08:44:46 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 3s. Last read position: chr7:869,417
INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 1378851 as yet unmatched pairs. 109133 records in RAM.
INFO 2026-06-08 08:44:48 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 2s. Last read position: chr7:2,544,951
INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 1374820 as yet unmatched pairs. 105082 records in RAM.
INFO 2026-06-08 08:44:51 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 2s. Last read position: chr7:5,387,864
INFO 2026-06-08 08:44:51 MarkDuplicates Tracking 1371313 as yet unmatched pairs. 101549 records in RAM.
INFO 2026-06-08 08:44:53 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,526
INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 1373641 as yet unmatched pairs. 103848 records in RAM.
INFO 2026-06-08 08:44:55 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 2s. Last read position: chr7:6,447,802
INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 1363920 as yet unmatched pairs. 94110 records in RAM.
INFO 2026-06-08 08:44:57 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr7:22,818,000
INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 1361690 as yet unmatched pairs. 91871 records in RAM.
INFO 2026-06-08 08:44:59 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr7:30,425,559
INFO 2026-06-08 08:44:59 MarkDuplicates Tracking 1357925 as yet unmatched pairs. 88080 records in RAM.
INFO 2026-06-08 08:45:00 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr7:43,877,548
INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 1354941 as yet unmatched pairs. 85083 records in RAM.
INFO 2026-06-08 08:45:02 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr7:44,799,716
INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 1353491 as yet unmatched pairs. 83630 records in RAM.
INFO 2026-06-08 08:45:04 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 2s. Last read position: chr7:55,255,846
INFO 2026-06-08 08:45:04 MarkDuplicates Tracking 1348139 as yet unmatched pairs. 78253 records in RAM.
INFO 2026-06-08 08:45:06 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr7:72,941,833
INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 1345449 as yet unmatched pairs. 75554 records in RAM.
INFO 2026-06-08 08:45:08 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr7:73,736,517
INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 1343960 as yet unmatched pairs. 74064 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 2s. Last read position: chr7:75,149,051
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 1340434 as yet unmatched pairs. 70528 records in RAM.
INFO 2026-06-08 08:45:12 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 2s. Last read position: chr7:76,302,789
INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 1339599 as yet unmatched pairs. 69683 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 2s. Last read position: chr7:77,057,744
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 1335282 as yet unmatched pairs. 65346 records in RAM.
INFO 2026-06-08 08:45:17 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 2s. Last read position: chr7:92,089,388
INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 1332549 as yet unmatched pairs. 62601 records in RAM.
INFO 2026-06-08 08:45:19 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr7:94,413,689
INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 1330328 as yet unmatched pairs. 60362 records in RAM.
INFO 2026-06-08 08:45:21 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr7:98,310,457
INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 1326042 as yet unmatched pairs. 56070 records in RAM.
INFO 2026-06-08 08:45:23 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr7:100,071,652
INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 1322811 as yet unmatched pairs. 52824 records in RAM.
INFO 2026-06-08 08:45:25 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr7:100,673,814
INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 1319476 as yet unmatched pairs. 49461 records in RAM.
INFO 2026-06-08 08:45:27 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr7:100,991,694
INFO 2026-06-08 08:45:27 MarkDuplicates Tracking 1316801 as yet unmatched pairs. 46771 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,574
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 1315218 as yet unmatched pairs. 45183 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,835
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 1314838 as yet unmatched pairs. 44803 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,039
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 1314691 as yet unmatched pairs. 44654 records in RAM.
INFO 2026-06-08 08:45:32 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,698
INFO 2026-06-08 08:45:32 MarkDuplicates Tracking 1316052 as yet unmatched pairs. 46015 records in RAM.
INFO 2026-06-08 08:45:34 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,439
INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 1315100 as yet unmatched pairs. 45063 records in RAM.
INFO 2026-06-08 08:45:36 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 2s. Last read position: chr7:100,998,300
INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 1311391 as yet unmatched pairs. 41351 records in RAM.
INFO 2026-06-08 08:45:37 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,949
INFO 2026-06-08 08:45:37 MarkDuplicates Tracking 1310918 as yet unmatched pairs. 40877 records in RAM.
INFO 2026-06-08 08:45:39 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,020
INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 1312837 as yet unmatched pairs. 42792 records in RAM.
INFO 2026-06-08 08:45:41 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 2s. Last read position: chr7:101,000,850
INFO 2026-06-08 08:45:41 MarkDuplicates Tracking 1311617 as yet unmatched pairs. 41572 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 2s. Last read position: chr7:101,001,574
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 1307272 as yet unmatched pairs. 37227 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,581
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 1307258 as yet unmatched pairs. 37213 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr7:101,004,250
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 1305208 as yet unmatched pairs. 35153 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr7:101,088,536
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 1302592 as yet unmatched pairs. 32527 records in RAM.
INFO 2026-06-08 08:45:50 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr7:102,567,010
INFO 2026-06-08 08:45:50 MarkDuplicates Tracking 1300725 as yet unmatched pairs. 30656 records in RAM.
INFO 2026-06-08 08:45:52 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 2s. Last read position: chr7:107,182,566
INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 1298078 as yet unmatched pairs. 27991 records in RAM.
INFO 2026-06-08 08:45:55 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 2s. Last read position: chr7:116,783,298
INFO 2026-06-08 08:45:55 MarkDuplicates Tracking 1295311 as yet unmatched pairs. 25206 records in RAM.
INFO 2026-06-08 08:45:57 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr7:127,707,635
INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 1294366 as yet unmatched pairs. 24234 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr7:130,129,478
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 1289637 as yet unmatched pairs. 19472 records in RAM.
INFO 2026-06-08 08:46:01 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr7:138,538,765
INFO 2026-06-08 08:46:01 MarkDuplicates Tracking 1286852 as yet unmatched pairs. 16667 records in RAM.
INFO 2026-06-08 08:46:03 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 2s. Last read position: chr7:141,615,473
INFO 2026-06-08 08:46:03 MarkDuplicates Tracking 1283494 as yet unmatched pairs. 13291 records in RAM.
INFO 2026-06-08 08:46:06 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 2s. Last read position: chr7:144,285,830
INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 1280961 as yet unmatched pairs. 10751 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 2s. Last read position: chr7:150,372,114
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 1278157 as yet unmatched pairs. 7930 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 2s. Last read position: chr7:151,238,601
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 1274051 as yet unmatched pairs. 3817 records in RAM.
INFO 2026-06-08 08:46:12 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr7:157,604,013
INFO 2026-06-08 08:46:12 MarkDuplicates Tracking 1270978 as yet unmatched pairs. 723 records in RAM.
INFO 2026-06-08 08:46:15 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 2s. Last read position: chr8:13,100,182
INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 1267660 as yet unmatched pairs. 85738 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 2s. Last read position: chr8:22,614,863
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 1264754 as yet unmatched pairs. 82821 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:29,092,759
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 1261204 as yet unmatched pairs. 79246 records in RAM.
INFO 2026-06-08 08:46:21 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr8:37,837,740
INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 1257316 as yet unmatched pairs. 75353 records in RAM.
INFO 2026-06-08 08:46:23 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:41,933,759
INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 1254280 as yet unmatched pairs. 72305 records in RAM.
INFO 2026-06-08 08:46:25 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr8:47,935,841
INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 1251453 as yet unmatched pairs. 69464 records in RAM.
INFO 2026-06-08 08:46:27 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 2s. Last read position: chr8:60,865,439
INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 1248163 as yet unmatched pairs. 66155 records in RAM.
INFO 2026-06-08 08:47:42 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 74s. Last read position: chr8:70,156,543
INFO 2026-06-08 08:47:42 MarkDuplicates Tracking 1245626 as yet unmatched pairs. 63613 records in RAM.
INFO 2026-06-08 08:47:44 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr8:85,329,721
INFO 2026-06-08 08:47:44 MarkDuplicates Tracking 1242656 as yet unmatched pairs. 60610 records in RAM.
INFO 2026-06-08 08:47:46 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr8:94,973,583
INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 1239904 as yet unmatched pairs. 57838 records in RAM.
INFO 2026-06-08 08:47:48 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr8:100,709,136
INFO 2026-06-08 08:47:48 MarkDuplicates Tracking 1238155 as yet unmatched pairs. 56078 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr8:102,360,630
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 1234196 as yet unmatched pairs. 52117 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 2s. Last read position: chr8:120,332,164
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 1231052 as yet unmatched pairs. 48959 records in RAM.
INFO 2026-06-08 08:47:54 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 2s. Last read position: chr8:127,738,844
INFO 2026-06-08 08:47:54 MarkDuplicates Tracking 1230315 as yet unmatched pairs. 48214 records in RAM.
INFO 2026-06-08 08:47:56 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr8:141,219,718
INFO 2026-06-08 08:47:56 MarkDuplicates Tracking 1224631 as yet unmatched pairs. 42512 records in RAM.
INFO 2026-06-08 08:47:58 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr8:143,613,218
INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 1220705 as yet unmatched pairs. 38562 records in RAM.
INFO 2026-06-08 08:48:00 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,188
INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 1217229 as yet unmatched pairs. 35073 records in RAM.
INFO 2026-06-08 08:48:01 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,001
INFO 2026-06-08 08:48:01 MarkDuplicates Tracking 1220832 as yet unmatched pairs. 38676 records in RAM.
INFO 2026-06-08 08:48:03 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,020
INFO 2026-06-08 08:48:03 MarkDuplicates Tracking 1215907 as yet unmatched pairs. 33749 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,147
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 1213384 as yet unmatched pairs. 31215 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,859
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 1214844 as yet unmatched pairs. 32675 records in RAM.
INFO 2026-06-08 08:48:07 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,908
INFO 2026-06-08 08:48:07 MarkDuplicates Tracking 1214028 as yet unmatched pairs. 31858 records in RAM.
INFO 2026-06-08 08:48:09 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,646
INFO 2026-06-08 08:48:09 MarkDuplicates Tracking 1208049 as yet unmatched pairs. 25870 records in RAM.
INFO 2026-06-08 08:48:10 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,716
INFO 2026-06-08 08:48:10 MarkDuplicates Tracking 1211952 as yet unmatched pairs. 29773 records in RAM.
INFO 2026-06-08 08:48:12 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,772
INFO 2026-06-08 08:48:12 MarkDuplicates Tracking 1205752 as yet unmatched pairs. 23573 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,515
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 1206196 as yet unmatched pairs. 24017 records in RAM.
INFO 2026-06-08 08:48:15 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr8:143,916,501
INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 1202761 as yet unmatched pairs. 20578 records in RAM.
INFO 2026-06-08 08:48:17 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr8:143,924,081
INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 1197754 as yet unmatched pairs. 15555 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 2s. Last read position: chr8:144,052,485
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 1192658 as yet unmatched pairs. 10440 records in RAM.
INFO 2026-06-08 08:48:21 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 2s. Last read position: chr8:144,318,852
INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 1189210 as yet unmatched pairs. 6984 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 2s. Last read position: chr8:144,514,237
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 1184564 as yet unmatched pairs. 2331 records in RAM.
INFO 2026-06-08 08:48:26 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 2s. Last read position: chr9:4,118,698
INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 1181175 as yet unmatched pairs. 85140 records in RAM.
INFO 2026-06-08 08:48:28 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr9:19,116,241
INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 1178343 as yet unmatched pairs. 82266 records in RAM.
INFO 2026-06-08 08:48:30 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr9:33,294,935
INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 1175207 as yet unmatched pairs. 79118 records in RAM.
INFO 2026-06-08 08:48:32 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr9:35,403,514
INFO 2026-06-08 08:48:32 MarkDuplicates Tracking 1171991 as yet unmatched pairs. 75888 records in RAM.
INFO 2026-06-08 08:48:34 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr9:36,665,363
INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 1168617 as yet unmatched pairs. 72473 records in RAM.
INFO 2026-06-08 08:48:36 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr9:71,700,751
INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 1165703 as yet unmatched pairs. 69546 records in RAM.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr9:83,062,547
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 1162948 as yet unmatched pairs. 66788 records in RAM.
INFO 2026-06-08 08:48:40 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 2s. Last read position: chr9:92,250,199
INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 1160055 as yet unmatched pairs. 63884 records in RAM.
INFO 2026-06-08 08:48:42 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr9:93,497,480
INFO 2026-06-08 08:48:42 MarkDuplicates Tracking 1156516 as yet unmatched pairs. 60339 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 2s. Last read position: chr9:98,087,488
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 1153177 as yet unmatched pairs. 56994 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 2s. Last read position: chr9:106,929,541
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 1150053 as yet unmatched pairs. 53859 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr9:112,262,528
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 1147203 as yet unmatched pairs. 51001 records in RAM.
INFO 2026-06-08 08:48:51 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr9:115,035,283
INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 1143752 as yet unmatched pairs. 47539 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr9:122,203,247
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 1140264 as yet unmatched pairs. 44042 records in RAM.
INFO 2026-06-08 08:48:54 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr9:127,397,283
INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 1137266 as yet unmatched pairs. 41026 records in RAM.
INFO 2026-06-08 08:48:56 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr9:128,166,229
INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 1133867 as yet unmatched pairs. 37624 records in RAM.
INFO 2026-06-08 08:48:58 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr9:128,612,179
INFO 2026-06-08 08:48:58 MarkDuplicates Tracking 1130530 as yet unmatched pairs. 34274 records in RAM.
INFO 2026-06-08 08:49:00 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 2s. Last read position: chr9:129,142,474
INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 1127960 as yet unmatched pairs. 31696 records in RAM.
INFO 2026-06-08 08:49:02 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 2s. Last read position: chr9:130,884,772
INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 1124082 as yet unmatched pairs. 27807 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 2s. Last read position: chr9:132,300,676
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 1120366 as yet unmatched pairs. 24075 records in RAM.
INFO 2026-06-08 08:49:06 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr9:133,796,510
INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 1117500 as yet unmatched pairs. 21187 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 2s. Last read position: chr9:135,827,455
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 1113850 as yet unmatched pairs. 17532 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr9:136,505,800
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 1110768 as yet unmatched pairs. 14440 records in RAM.
INFO 2026-06-08 08:49:13 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr9:136,858,723
INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 1106259 as yet unmatched pairs. 9914 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr9:137,192,014
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 1102601 as yet unmatched pairs. 6249 records in RAM.
INFO 2026-06-08 08:49:17 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr9:137,459,035
INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 1097799 as yet unmatched pairs. 1438 records in RAM.
INFO 2026-06-08 08:49:19 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 2s. Last read position: chr10:5,456,748
INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 1095160 as yet unmatched pairs. 59361 records in RAM.
INFO 2026-06-08 08:49:21 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr10:14,851,196
INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 1091414 as yet unmatched pairs. 55605 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr10:26,759,228
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 1088647 as yet unmatched pairs. 52820 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 2s. Last read position: chr10:32,022,141
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 1087223 as yet unmatched pairs. 51384 records in RAM.
INFO 2026-06-08 08:49:28 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 2s. Last read position: chr10:42,793,927
INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 1083275 as yet unmatched pairs. 47428 records in RAM.
INFO 2026-06-08 08:49:30 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 2s. Last read position: chr10:46,130,799
INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 1080814 as yet unmatched pairs. 44965 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr10:50,343,602
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 1078846 as yet unmatched pairs. 42993 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr10:68,337,861
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 1075849 as yet unmatched pairs. 39978 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr10:72,423,271
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 1072588 as yet unmatched pairs. 36696 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr10:75,028,603
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 1069727 as yet unmatched pairs. 33826 records in RAM.
INFO 2026-06-08 08:49:39 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr10:80,170,866
INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 1067484 as yet unmatched pairs. 31578 records in RAM.
INFO 2026-06-08 08:49:41 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 2s. Last read position: chr10:91,855,615
INFO 2026-06-08 08:49:41 MarkDuplicates Tracking 1063791 as yet unmatched pairs. 27882 records in RAM.
INFO 2026-06-08 08:49:43 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 2s. Last read position: chr10:96,949,153
INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 1060842 as yet unmatched pairs. 24926 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr10:101,039,170
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 1057444 as yet unmatched pairs. 21514 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr10:103,602,638
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 1054313 as yet unmatched pairs. 18364 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 3s. Last read position: chr10:113,151,003
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 1051427 as yet unmatched pairs. 15460 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 2s. Last read position: chr10:119,072,947
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 1048528 as yet unmatched pairs. 12551 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 2s. Last read position: chr10:122,576,668
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 1046362 as yet unmatched pairs. 10370 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr10:122,603,115
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 1044681 as yet unmatched pairs. 8685 records in RAM.
INFO 2026-06-08 08:49:57 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr10:122,637,153
INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 1042758 as yet unmatched pairs. 6759 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr10:128,104,680
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 1039162 as yet unmatched pairs. 3150 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 3s. Last read position: chr11:208,830
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 1036212 as yet unmatched pairs. 125145 records in RAM.
INFO 2026-06-08 08:50:04 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr11:377,114
INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 1032968 as yet unmatched pairs. 121898 records in RAM.
INFO 2026-06-08 08:50:06 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 2s. Last read position: chr11:617,984
INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 1029992 as yet unmatched pairs. 118914 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr11:831,578
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 1025542 as yet unmatched pairs. 114458 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr11:1,083,786
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 1022476 as yet unmatched pairs. 111387 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr11:1,235,132
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 1018298 as yet unmatched pairs. 107195 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,659
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 1016732 as yet unmatched pairs. 105628 records in RAM.
INFO 2026-06-08 08:50:16 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 2s. Last read position: chr11:3,001,961
INFO 2026-06-08 08:50:16 MarkDuplicates Tracking 1012559 as yet unmatched pairs. 101451 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 2s. Last read position: chr11:6,624,182
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 1009363 as yet unmatched pairs. 98252 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 2s. Last read position: chr11:10,768,447
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 1005927 as yet unmatched pairs. 94806 records in RAM.
INFO 2026-06-08 08:50:23 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr11:16,791,062
INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 1003192 as yet unmatched pairs. 92060 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr11:27,472,207
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 1000208 as yet unmatched pairs. 89062 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr11:35,219,370
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 997803 as yet unmatched pairs. 86640 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr11:46,372,650
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 994228 as yet unmatched pairs. 83053 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr11:47,579,140
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 991352 as yet unmatched pairs. 80161 records in RAM.
INFO 2026-06-08 08:50:33 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr11:57,811,444
INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 988334 as yet unmatched pairs. 77129 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr11:61,311,800
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 984728 as yet unmatched pairs. 73512 records in RAM.
INFO 2026-06-08 08:50:36 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr11:62,517,972
INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 981828 as yet unmatched pairs. 70599 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr11:62,571,628
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 979967 as yet unmatched pairs. 68735 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 2s. Last read position: chr11:63,903,995
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 976003 as yet unmatched pairs. 64760 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 2s. Last read position: chr11:64,317,294
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 972026 as yet unmatched pairs. 60781 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 2s. Last read position: chr11:65,044,252
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 968557 as yet unmatched pairs. 57290 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 2s. Last read position: chr11:65,573,483
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 964804 as yet unmatched pairs. 53516 records in RAM.
INFO 2026-06-08 08:50:49 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr11:65,779,259
INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 960997 as yet unmatched pairs. 49701 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr11:66,491,348
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 957505 as yet unmatched pairs. 46202 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 2s. Last read position: chr11:67,398,766
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 954090 as yet unmatched pairs. 42781 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr11:68,049,140
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 950131 as yet unmatched pairs. 38817 records in RAM.
INFO 2026-06-08 08:50:57 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr11:70,170,931
INFO 2026-06-08 08:50:57 MarkDuplicates Tracking 946584 as yet unmatched pairs. 35259 records in RAM.
INFO 2026-06-08 08:50:59 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr11:72,228,354
INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 943309 as yet unmatched pairs. 31968 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 2s. Last read position: chr11:75,266,241
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 939886 as yet unmatched pairs. 28539 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 2s. Last read position: chr11:77,921,385
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 936542 as yet unmatched pairs. 25180 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 2s. Last read position: chr11:93,759,758
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 933769 as yet unmatched pairs. 22384 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr11:102,350,871
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 930218 as yet unmatched pairs. 18813 records in RAM.
INFO 2026-06-08 08:51:09 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 2s. Last read position: chr11:113,854,258
INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 927185 as yet unmatched pairs. 15776 records in RAM.
INFO 2026-06-08 08:51:11 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr11:118,476,922
INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 924359 as yet unmatched pairs. 12940 records in RAM.
INFO 2026-06-08 08:51:13 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr11:119,101,018
INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 921324 as yet unmatched pairs. 9896 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr11:123,059,669
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 919985 as yet unmatched pairs. 8542 records in RAM.
INFO 2026-06-08 08:51:17 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr11:128,969,107
INFO 2026-06-08 08:51:17 MarkDuplicates Tracking 915467 as yet unmatched pairs. 4011 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr11:131,911,550
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 912157 as yet unmatched pairs. 681 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 3s. Last read position: chr12:2,872,094
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 909131 as yet unmatched pairs. 99014 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 2s. Last read position: chr12:6,453,560
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 905877 as yet unmatched pairs. 95754 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 2s. Last read position: chr12:6,868,896
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 903277 as yet unmatched pairs. 93149 records in RAM.
INFO 2026-06-08 08:51:29 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr12:8,942,465
INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 899514 as yet unmatched pairs. 89381 records in RAM.
INFO 2026-06-08 08:51:31 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr12:12,787,230
INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 896692 as yet unmatched pairs. 86552 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr12:22,625,377
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 895254 as yet unmatched pairs. 85105 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 2s. Last read position: chr12:39,340,927
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 890704 as yet unmatched pairs. 80534 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr12:48,775,008
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 888077 as yet unmatched pairs. 77891 records in RAM.
INFO 2026-06-08 08:51:39 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 2s. Last read position: chr12:49,052,221
INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 884704 as yet unmatched pairs. 74511 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr12:49,273,116
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 882663 as yet unmatched pairs. 72469 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr12:51,197,880
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 879270 as yet unmatched pairs. 69061 records in RAM.
INFO 2026-06-08 08:51:44 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr12:52,949,404
INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 876639 as yet unmatched pairs. 66425 records in RAM.
INFO 2026-06-08 08:51:46 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr12:53,443,560
INFO 2026-06-08 08:51:46 MarkDuplicates Tracking 874571 as yet unmatched pairs. 64349 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 2s. Last read position: chr12:54,397,365
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 870274 as yet unmatched pairs. 60047 records in RAM.
INFO 2026-06-08 08:51:51 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 2s. Last read position: chr12:56,138,490
INFO 2026-06-08 08:51:51 MarkDuplicates Tracking 867288 as yet unmatched pairs. 57054 records in RAM.
INFO 2026-06-08 08:51:53 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 2s. Last read position: chr12:56,601,204
INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 864445 as yet unmatched pairs. 54204 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr12:57,047,326
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 861448 as yet unmatched pairs. 51195 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr12:57,107,733
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 859465 as yet unmatched pairs. 49211 records in RAM.
INFO 2026-06-08 08:51:59 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr12:57,289,020
INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 855205 as yet unmatched pairs. 44939 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr12:62,500,860
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 852084 as yet unmatched pairs. 41817 records in RAM.
INFO 2026-06-08 08:52:03 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr12:69,587,588
INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 849409 as yet unmatched pairs. 39131 records in RAM.
INFO 2026-06-08 08:52:05 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr12:91,164,609
INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 846376 as yet unmatched pairs. 36085 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr12:101,716,728
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 843275 as yet unmatched pairs. 32978 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr12:108,565,405
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 840446 as yet unmatched pairs. 30145 records in RAM.
INFO 2026-06-08 08:52:11 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 2s. Last read position: chr12:111,418,231
INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 837138 as yet unmatched pairs. 26834 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 2s. Last read position: chr12:112,908,758
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 834258 as yet unmatched pairs. 23944 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 2s. Last read position: chr12:118,043,362
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 831022 as yet unmatched pairs. 20701 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr12:120,222,708
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 827747 as yet unmatched pairs. 17413 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr12:121,810,164
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 824240 as yet unmatched pairs. 13901 records in RAM.
INFO 2026-06-08 08:52:21 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr12:122,860,050
INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 820716 as yet unmatched pairs. 10371 records in RAM.
INFO 2026-06-08 08:52:23 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr12:124,372,043
INFO 2026-06-08 08:52:23 MarkDuplicates Tracking 817543 as yet unmatched pairs. 7193 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr12:132,066,949
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 814397 as yet unmatched pairs. 4040 records in RAM.
INFO 2026-06-08 08:52:27 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 2s. Last read position: chr13:19,633,718
INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 810421 as yet unmatched pairs. 27301 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr13:24,503,657
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 807685 as yet unmatched pairs. 24558 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr13:31,143,845
INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 804727 as yet unmatched pairs. 21590 records in RAM.
INFO 2026-06-08 08:52:33 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr13:43,078,645
INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 801674 as yet unmatched pairs. 18523 records in RAM.
INFO 2026-06-08 08:52:35 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 2s. Last read position: chr13:50,012,225
INFO 2026-06-08 08:52:35 MarkDuplicates Tracking 798460 as yet unmatched pairs. 15295 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 2s. Last read position: chr13:72,122,518
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 795795 as yet unmatched pairs. 12623 records in RAM.
INFO 2026-06-08 08:52:40 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 2s. Last read position: chr13:97,357,542
INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 792812 as yet unmatched pairs. 9631 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr13:110,161,310
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 789358 as yet unmatched pairs. 6161 records in RAM.
INFO 2026-06-08 08:52:43 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr13:112,554,921
INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 785674 as yet unmatched pairs. 2469 records in RAM.
INFO 2026-06-08 08:52:46 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 2s. Last read position: chr14:20,458,578
INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 782295 as yet unmatched pairs. 65292 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr14:22,788,735
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 778822 as yet unmatched pairs. 61811 records in RAM.
INFO 2026-06-08 08:52:50 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr14:23,321,649
INFO 2026-06-08 08:52:50 MarkDuplicates Tracking 776158 as yet unmatched pairs. 59142 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr14:24,194,783
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 772174 as yet unmatched pairs. 55158 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 2s. Last read position: chr14:32,077,361
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 769040 as yet unmatched pairs. 52017 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 2s. Last read position: chr14:49,583,646
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 769622 as yet unmatched pairs. 52585 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 2s. Last read position: chr14:54,436,402
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 763332 as yet unmatched pairs. 46270 records in RAM.
INFO 2026-06-08 08:53:01 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr14:61,280,156
INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 760327 as yet unmatched pairs. 43255 records in RAM.
INFO 2026-06-08 08:53:03 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr14:64,939,373
INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 757972 as yet unmatched pairs. 40890 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr14:68,912,196
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 754432 as yet unmatched pairs. 37344 records in RAM.
INFO 2026-06-08 08:53:06 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 2s. Last read position: chr14:73,738,710
INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 751088 as yet unmatched pairs. 33989 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr14:77,026,059
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 748179 as yet unmatched pairs. 31071 records in RAM.
INFO 2026-06-08 08:53:10 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr14:91,470,985
INFO 2026-06-08 08:53:10 MarkDuplicates Tracking 745051 as yet unmatched pairs. 27915 records in RAM.
INFO 2026-06-08 08:53:12 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr14:95,543,990
INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 741992 as yet unmatched pairs. 24848 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr14:102,007,007
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 738902 as yet unmatched pairs. 21739 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 2s. Last read position: chr14:102,930,408
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 735666 as yet unmatched pairs. 18480 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 2s. Last read position: chr14:104,714,348
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 733144 as yet unmatched pairs. 15949 records in RAM.
INFO 2026-06-08 08:53:21 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 2s. Last read position: chr14:105,382,850
INFO 2026-06-08 08:53:21 MarkDuplicates Tracking 727969 as yet unmatched pairs. 10773 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 2s. Last read position: chr14:105,587,771
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 727503 as yet unmatched pairs. 10303 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 2s. Last read position: chr14:105,707,254
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 741532 as yet unmatched pairs. 24330 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,130
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 720570 as yet unmatched pairs. 3364 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 2s. Last read position: chr15:28,113,210
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 716303 as yet unmatched pairs. 55127 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 2s. Last read position: chr15:32,969,281
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 713738 as yet unmatched pairs. 52561 records in RAM.
INFO 2026-06-08 08:53:34 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 2s. Last read position: chr15:40,353,246
INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 715644 as yet unmatched pairs. 54460 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 1s. Last read position: chr15:41,243,684
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 707504 as yet unmatched pairs. 46312 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 1s. Last read position: chr15:42,753,068
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 703997 as yet unmatched pairs. 42799 records in RAM.
INFO 2026-06-08 08:53:39 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 1s. Last read position: chr15:43,800,625
INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 701601 as yet unmatched pairs. 40401 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 2s. Last read position: chr15:48,644,622
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 698530 as yet unmatched pairs. 37325 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:16:07s. Time for last 1,000,000: 2s. Last read position: chr15:56,704,166
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 695775 as yet unmatched pairs. 34557 records in RAM.
INFO 2026-06-08 08:53:45 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 1s. Last read position: chr15:60,364,464
INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 693368 as yet unmatched pairs. 32148 records in RAM.
INFO 2026-06-08 08:53:47 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 2s. Last read position: chr15:64,093,666
INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 689441 as yet unmatched pairs. 28216 records in RAM.
INFO 2026-06-08 08:53:49 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 1s. Last read position: chr15:67,184,732
INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 686289 as yet unmatched pairs. 25051 records in RAM.
INFO 2026-06-08 08:53:51 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 1s. Last read position: chr15:72,257,389
INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 683138 as yet unmatched pairs. 21888 records in RAM.
INFO 2026-06-08 08:53:53 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:16:16s. Time for last 1,000,000: 2s. Last read position: chr15:74,175,973
INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 679750 as yet unmatched pairs. 18494 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 1s. Last read position: chr15:75,517,344
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 676205 as yet unmatched pairs. 14945 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 2s. Last read position: chr15:80,695,892
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 673173 as yet unmatched pairs. 11906 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:16:22s. Time for last 1,000,000: 2s. Last read position: chr15:85,581,314
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 670359 as yet unmatched pairs. 9088 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 1s. Last read position: chr15:89,803,962
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 668271 as yet unmatched pairs. 6990 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:16:26s. Time for last 1,000,000: 1s. Last read position: chr15:90,950,535
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 664369 as yet unmatched pairs. 3081 records in RAM.
INFO 2026-06-08 08:54:06 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:16:29s. Time for last 1,000,000: 3s. Last read position: chr16:53,898
INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 661280 as yet unmatched pairs. 111990 records in RAM.
INFO 2026-06-08 08:54:08 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:16:32s. Time for last 1,000,000: 2s. Last read position: chr16:654,948
INFO 2026-06-08 08:54:08 MarkDuplicates Tracking 657319 as yet unmatched pairs. 108025 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 2s. Last read position: chr16:1,474,852
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 653446 as yet unmatched pairs. 104148 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 1s. Last read position: chr16:2,056,211
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 648832 as yet unmatched pairs. 99527 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:16:37s. Time for last 1,000,000: 1s. Last read position: chr16:2,498,361
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 644979 as yet unmatched pairs. 95666 records in RAM.
INFO 2026-06-08 08:54:16 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 2s. Last read position: chr16:2,766,225
INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 642718 as yet unmatched pairs. 93404 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:16:42s. Time for last 1,000,000: 2s. Last read position: chr16:3,069,067
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 638439 as yet unmatched pairs. 89116 records in RAM.
INFO 2026-06-08 08:54:21 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:16:44s. Time for last 1,000,000: 2s. Last read position: chr16:4,508,180
INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 634962 as yet unmatched pairs. 85633 records in RAM.
INFO 2026-06-08 08:54:23 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 2s. Last read position: chr16:11,123,802
INFO 2026-06-08 08:54:23 MarkDuplicates Tracking 631470 as yet unmatched pairs. 82134 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 1s. Last read position: chr16:14,918,137
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 629086 as yet unmatched pairs. 79748 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 1s. Last read position: chr16:15,636,004
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 627242 as yet unmatched pairs. 77879 records in RAM.
INFO 2026-06-08 08:54:28 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 1s. Last read position: chr16:16,344,098
INFO 2026-06-08 08:54:28 MarkDuplicates Tracking 625378 as yet unmatched pairs. 76013 records in RAM.
INFO 2026-06-08 08:54:30 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 1s. Last read position: chr16:18,376,734
INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 624705 as yet unmatched pairs. 75340 records in RAM.
INFO 2026-06-08 08:54:32 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 1s. Last read position: chr16:18,876,250
INFO 2026-06-08 08:54:32 MarkDuplicates Tracking 622127 as yet unmatched pairs. 72758 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 1s. Last read position: chr16:21,404,873
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 621342 as yet unmatched pairs. 71967 records in RAM.
INFO 2026-06-08 08:54:35 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:16:58s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,182
INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 618890 as yet unmatched pairs. 69512 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:17:00s. Time for last 1,000,000: 1s. Last read position: chr16:22,523,895
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 617793 as yet unmatched pairs. 68414 records in RAM.
INFO 2026-06-08 08:54:38 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 1s. Last read position: chr16:23,596,158
INFO 2026-06-08 08:54:38 MarkDuplicates Tracking 616432 as yet unmatched pairs. 67052 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 2s. Last read position: chr16:28,379,764
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 613838 as yet unmatched pairs. 64455 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 1s. Last read position: chr16:28,836,019
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 611105 as yet unmatched pairs. 61716 records in RAM.
INFO 2026-06-08 08:54:43 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 1s. Last read position: chr16:29,455,831
INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 609705 as yet unmatched pairs. 60306 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 1s. Last read position: chr16:29,807,380
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 607664 as yet unmatched pairs. 58262 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 1s. Last read position: chr16:30,067,642
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 603974 as yet unmatched pairs. 54567 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chr16:30,225,713
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 601187 as yet unmatched pairs. 51774 records in RAM.
INFO 2026-06-08 08:54:50 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr16:30,720,189
INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 598371 as yet unmatched pairs. 48958 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 2s. Last read position: chr16:31,093,352
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 595364 as yet unmatched pairs. 45941 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 2s. Last read position: chr16:31,508,269
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 591901 as yet unmatched pairs. 42468 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 1s. Last read position: chr16:54,933,759
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 589146 as yet unmatched pairs. 39703 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 2s. Last read position: chr16:57,430,262
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 585599 as yet unmatched pairs. 36153 records in RAM.
INFO 2026-06-08 08:55:02 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 2s. Last read position: chr16:66,622,112
INFO 2026-06-08 08:55:02 MarkDuplicates Tracking 582211 as yet unmatched pairs. 32757 records in RAM.
INFO 2026-06-08 08:55:04 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 2s. Last read position: chr16:67,542,508
INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 578109 as yet unmatched pairs. 28652 records in RAM.
INFO 2026-06-08 08:55:06 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr16:68,811,776
INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 575100 as yet unmatched pairs. 25642 records in RAM.
INFO 2026-06-08 08:55:08 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr16:70,146,149
INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 572039 as yet unmatched pairs. 22580 records in RAM.
INFO 2026-06-08 08:55:10 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr16:72,098,695
INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 568610 as yet unmatched pairs. 19143 records in RAM.
INFO 2026-06-08 08:55:11 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr16:75,631,236
INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 565392 as yet unmatched pairs. 15916 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr16:85,656,355
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 562104 as yet unmatched pairs. 12624 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr16:88,534,815
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 558257 as yet unmatched pairs. 8772 records in RAM.
INFO 2026-06-08 08:55:17 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr16:89,228,453
INFO 2026-06-08 08:55:17 MarkDuplicates Tracking 554546 as yet unmatched pairs. 5053 records in RAM.
INFO 2026-06-08 08:55:19 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 1s. Last read position: chr16:89,738,600
INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 551171 as yet unmatched pairs. 1676 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 4s. Last read position: chr17:1,345,468
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 550954 as yet unmatched pairs. 178964 records in RAM.
INFO 2026-06-08 08:55:26 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 2s. Last read position: chr17:1,675,714
INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 544698 as yet unmatched pairs. 172706 records in RAM.
INFO 2026-06-08 08:55:28 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr17:2,698,258
INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 541167 as yet unmatched pairs. 169175 records in RAM.
INFO 2026-06-08 08:55:30 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr17:4,552,576
INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 537408 as yet unmatched pairs. 165414 records in RAM.
INFO 2026-06-08 08:55:32 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 1s. Last read position: chr17:4,972,466
INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 533920 as yet unmatched pairs. 161920 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr17:7,224,221
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 530561 as yet unmatched pairs. 158555 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 2s. Last read position: chr17:7,444,245
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 526894 as yet unmatched pairs. 154887 records in RAM.
INFO 2026-06-08 08:55:38 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr17:7,845,616
INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 524198 as yet unmatched pairs. 152189 records in RAM.
INFO 2026-06-08 08:55:40 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr17:8,490,400
INFO 2026-06-08 08:55:40 MarkDuplicates Tracking 520713 as yet unmatched pairs. 148698 records in RAM.
INFO 2026-06-08 08:55:42 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 2s. Last read position: chr17:16,491,947
INFO 2026-06-08 08:55:42 MarkDuplicates Tracking 517452 as yet unmatched pairs. 145426 records in RAM.
INFO 2026-06-08 08:55:44 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 2s. Last read position: chr17:18,671,252
INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 513988 as yet unmatched pairs. 141955 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 2s. Last read position: chr17:28,172,525
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 511100 as yet unmatched pairs. 139062 records in RAM.
INFO 2026-06-08 08:55:49 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 2s. Last read position: chr17:28,919,202
INFO 2026-06-08 08:55:49 MarkDuplicates Tracking 508227 as yet unmatched pairs. 136183 records in RAM.
INFO 2026-06-08 08:55:51 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 2s. Last read position: chr17:31,343,043
INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 505211 as yet unmatched pairs. 133159 records in RAM.
INFO 2026-06-08 08:55:53 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr17:35,820,050
INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 503967 as yet unmatched pairs. 131905 records in RAM.
INFO 2026-06-08 08:55:55 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr17:37,934,678
INFO 2026-06-08 08:55:55 MarkDuplicates Tracking 499672 as yet unmatched pairs. 127603 records in RAM.
INFO 2026-06-08 08:55:56 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr17:39,067,874
INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 497100 as yet unmatched pairs. 125030 records in RAM.
INFO 2026-06-08 08:55:58 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr17:39,715,286
INFO 2026-06-08 08:55:58 MarkDuplicates Tracking 495793 as yet unmatched pairs. 123722 records in RAM.
INFO 2026-06-08 08:56:00 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr17:40,036,133
INFO 2026-06-08 08:56:00 MarkDuplicates Tracking 490415 as yet unmatched pairs. 118342 records in RAM.
INFO 2026-06-08 08:56:02 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr17:41,523,876
INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 487719 as yet unmatched pairs. 115646 records in RAM.
INFO 2026-06-08 08:56:04 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 2s. Last read position: chr17:42,192,391
INFO 2026-06-08 08:56:04 MarkDuplicates Tracking 483485 as yet unmatched pairs. 111403 records in RAM.
INFO 2026-06-08 08:56:07 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 2s. Last read position: chr17:42,998,783
INFO 2026-06-08 08:56:07 MarkDuplicates Tracking 480662 as yet unmatched pairs. 108574 records in RAM.
INFO 2026-06-08 08:56:09 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 2s. Last read position: chr17:44,322,441
INFO 2026-06-08 08:56:09 MarkDuplicates Tracking 477762 as yet unmatched pairs. 105668 records in RAM.
INFO 2026-06-08 08:56:12 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 2s. Last read position: chr17:45,475,100
INFO 2026-06-08 08:56:12 MarkDuplicates Tracking 473629 as yet unmatched pairs. 101535 records in RAM.
INFO 2026-06-08 08:56:13 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr17:47,531,351
INFO 2026-06-08 08:56:13 MarkDuplicates Tracking 472052 as yet unmatched pairs. 99958 records in RAM.
INFO 2026-06-08 08:56:15 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr17:48,922,903
INFO 2026-06-08 08:56:15 MarkDuplicates Tracking 468367 as yet unmatched pairs. 96271 records in RAM.
INFO 2026-06-08 08:56:17 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,491
INFO 2026-06-08 08:56:17 MarkDuplicates Tracking 467628 as yet unmatched pairs. 95530 records in RAM.
INFO 2026-06-08 08:56:19 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,936
INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 474163 as yet unmatched pairs. 102061 records in RAM.
INFO 2026-06-08 08:58:54 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 155s. Last read position: chr17:50,188,914
INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 471894 as yet unmatched pairs. 99792 records in RAM.
INFO 2026-06-08 08:58:57 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,707
INFO 2026-06-08 08:58:57 MarkDuplicates Tracking 470351 as yet unmatched pairs. 98249 records in RAM.
INFO 2026-06-08 08:58:59 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,545
INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 462969 as yet unmatched pairs. 90867 records in RAM.
INFO 2026-06-08 08:59:01 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 2s. Last read position: chr17:50,192,480
INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 455788 as yet unmatched pairs. 83686 records in RAM.
INFO 2026-06-08 08:59:03 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 2s. Last read position: chr17:50,193,994
INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 455032 as yet unmatched pairs. 82930 records in RAM.
INFO 2026-06-08 08:59:05 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,766
INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 451754 as yet unmatched pairs. 79649 records in RAM.
INFO 2026-06-08 08:59:07 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,651
INFO 2026-06-08 08:59:07 MarkDuplicates Tracking 448444 as yet unmatched pairs. 76333 records in RAM.
INFO 2026-06-08 08:59:09 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,649
INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 448088 as yet unmatched pairs. 75973 records in RAM.
INFO 2026-06-08 08:59:11 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 2s. Last read position: chr17:50,198,478
INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 438056 as yet unmatched pairs. 65940 records in RAM.
INFO 2026-06-08 08:59:13 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 1s. Last read position: chr17:50,394,939
INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 426738 as yet unmatched pairs. 54620 records in RAM.
INFO 2026-06-08 08:59:15 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 2s. Last read position: chr17:56,891,669
INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 423093 as yet unmatched pairs. 50969 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 1s. Last read position: chr17:58,496,326
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 419576 as yet unmatched pairs. 47451 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 1s. Last read position: chr17:59,682,924
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 418424 as yet unmatched pairs. 46296 records in RAM.
INFO 2026-06-08 08:59:21 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 1s. Last read position: chr17:63,437,507
INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 413561 as yet unmatched pairs. 41426 records in RAM.
INFO 2026-06-08 08:59:23 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 2s. Last read position: chr17:64,895,119
INFO 2026-06-08 08:59:23 MarkDuplicates Tracking 410211 as yet unmatched pairs. 38071 records in RAM.
INFO 2026-06-08 08:59:26 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 2s. Last read position: chr17:68,523,784
INFO 2026-06-08 08:59:26 MarkDuplicates Tracking 408197 as yet unmatched pairs. 36048 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 1s. Last read position: chr17:75,136,120
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 404386 as yet unmatched pairs. 32229 records in RAM.
INFO 2026-06-08 08:59:30 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:21:53s. Time for last 1,000,000: 1s. Last read position: chr17:75,615,824
INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 400726 as yet unmatched pairs. 28567 records in RAM.
INFO 2026-06-08 08:59:32 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 1s. Last read position: chr17:75,949,244
INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 397095 as yet unmatched pairs. 24930 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 1s. Last read position: chr17:76,737,120
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 393478 as yet unmatched pairs. 21307 records in RAM.
INFO 2026-06-08 08:59:36 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 1s. Last read position: chr17:78,973,009
INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 390409 as yet unmatched pairs. 18234 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:22:01s. Time for last 1,000,000: 1s. Last read position: chr17:80,345,897
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 386916 as yet unmatched pairs. 14739 records in RAM.
INFO 2026-06-08 08:59:39 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 1s. Last read position: chr17:81,512,130
INFO 2026-06-08 08:59:39 MarkDuplicates Tracking 384347 as yet unmatched pairs. 12155 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 1s. Last read position: chr17:81,888,253
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 379480 as yet unmatched pairs. 7280 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 2s. Last read position: chr17:82,088,553
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 375697 as yet unmatched pairs. 3496 records in RAM.
INFO 2026-06-08 08:59:45 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 2s. Last read position: chr18:2,707,860
INFO 2026-06-08 08:59:45 MarkDuplicates Tracking 371498 as yet unmatched pairs. 15707 records in RAM.
INFO 2026-06-08 08:59:47 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:22:11s. Time for last 1,000,000: 1s. Last read position: chr18:12,657,678
INFO 2026-06-08 08:59:47 MarkDuplicates Tracking 368334 as yet unmatched pairs. 12539 records in RAM.
INFO 2026-06-08 08:59:49 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 2s. Last read position: chr18:31,524,755
INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 365243 as yet unmatched pairs. 9446 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 2s. Last read position: chr18:49,787,289
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 362516 as yet unmatched pairs. 6717 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 1s. Last read position: chr18:62,095,851
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 359344 as yet unmatched pairs. 3541 records in RAM.
INFO 2026-06-08 08:59:58 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:22:21s. Time for last 1,000,000: 4s. Last read position: chr19:60,564
INFO 2026-06-08 08:59:58 MarkDuplicates Tracking 355811 as yet unmatched pairs. 174799 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:22:24s. Time for last 1,000,000: 2s. Last read position: chr19:810,606
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 352311 as yet unmatched pairs. 171299 records in RAM.
INFO 2026-06-08 09:00:02 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:22:26s. Time for last 1,000,000: 2s. Last read position: chr19:1,244,344
INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 348721 as yet unmatched pairs. 167706 records in RAM.
INFO 2026-06-08 09:00:04 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:22:27s. Time for last 1,000,000: 1s. Last read position: chr19:1,619,184
INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 343572 as yet unmatched pairs. 162552 records in RAM.
INFO 2026-06-08 09:00:06 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:22:29s. Time for last 1,000,000: 1s. Last read position: chr19:2,234,154
INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 339871 as yet unmatched pairs. 158850 records in RAM.
INFO 2026-06-08 09:00:08 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:22:32s. Time for last 1,000,000: 2s. Last read position: chr19:3,433,544
INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 335643 as yet unmatched pairs. 154620 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:22:33s. Time for last 1,000,000: 1s. Last read position: chr19:4,327,369
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 331423 as yet unmatched pairs. 150398 records in RAM.
INFO 2026-06-08 09:00:12 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:22:35s. Time for last 1,000,000: 1s. Last read position: chr19:5,661,614
INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 327990 as yet unmatched pairs. 146963 records in RAM.
INFO 2026-06-08 09:00:14 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:22:37s. Time for last 1,000,000: 1s. Last read position: chr19:6,374,295
INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 324470 as yet unmatched pairs. 143441 records in RAM.
INFO 2026-06-08 09:00:16 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:22:39s. Time for last 1,000,000: 2s. Last read position: chr19:7,611,823
INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 320834 as yet unmatched pairs. 139804 records in RAM.
INFO 2026-06-08 09:00:18 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:22:41s. Time for last 1,000,000: 1s. Last read position: chr19:9,828,852
INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 317102 as yet unmatched pairs. 136071 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:22:43s. Time for last 1,000,000: 1s. Last read position: chr19:10,625,555
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 313418 as yet unmatched pairs. 132386 records in RAM.
INFO 2026-06-08 09:00:21 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:22:45s. Time for last 1,000,000: 1s. Last read position: chr19:11,089,537
INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 310303 as yet unmatched pairs. 129271 records in RAM.
INFO 2026-06-08 09:00:24 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:22:47s. Time for last 1,000,000: 2s. Last read position: chr19:12,705,279
INFO 2026-06-08 09:00:24 MarkDuplicates Tracking 307089 as yet unmatched pairs. 126055 records in RAM.
INFO 2026-06-08 09:00:25 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:22:49s. Time for last 1,000,000: 1s. Last read position: chr19:13,153,800
INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 302996 as yet unmatched pairs. 121962 records in RAM.
INFO 2026-06-08 09:00:28 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:22:51s. Time for last 1,000,000: 2s. Last read position: chr19:14,515,950
INFO 2026-06-08 09:00:28 MarkDuplicates Tracking 300010 as yet unmatched pairs. 118974 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:22:54s. Time for last 1,000,000: 2s. Last read position: chr19:15,244,318
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 296293 as yet unmatched pairs. 115257 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:22:56s. Time for last 1,000,000: 2s. Last read position: chr19:16,521,599
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 292442 as yet unmatched pairs. 111397 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:22:58s. Time for last 1,000,000: 2s. Last read position: chr19:17,727,177
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 288377 as yet unmatched pairs. 107322 records in RAM.
INFO 2026-06-08 09:00:36 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:22:59s. Time for last 1,000,000: 1s. Last read position: chr19:18,436,766
INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 284531 as yet unmatched pairs. 103474 records in RAM.
INFO 2026-06-08 09:00:38 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:23:01s. Time for last 1,000,000: 1s. Last read position: chr19:19,495,874
INFO 2026-06-08 09:00:38 MarkDuplicates Tracking 281060 as yet unmatched pairs. 100001 records in RAM.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:23:04s. Time for last 1,000,000: 2s. Last read position: chr19:33,301,559
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 277714 as yet unmatched pairs. 96655 records in RAM.
INFO 2026-06-08 09:00:43 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:23:06s. Time for last 1,000,000: 2s. Last read position: chr19:35,267,646
INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 274965 as yet unmatched pairs. 93905 records in RAM.
INFO 2026-06-08 09:00:44 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:23:08s. Time for last 1,000,000: 1s. Last read position: chr19:36,143,090
INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 270492 as yet unmatched pairs. 89429 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:23:10s. Time for last 1,000,000: 2s. Last read position: chr19:38,709,406
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 267479 as yet unmatched pairs. 86410 records in RAM.
INFO 2026-06-08 09:00:49 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:23:12s. Time for last 1,000,000: 1s. Last read position: chr19:38,840,215
INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 263680 as yet unmatched pairs. 82607 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:23:14s. Time for last 1,000,000: 1s. Last read position: chr19:39,863,356
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 261806 as yet unmatched pairs. 80730 records in RAM.
INFO 2026-06-08 09:00:53 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:23:16s. Time for last 1,000,000: 2s. Last read position: chr19:39,875,818
INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 257019 as yet unmatched pairs. 75941 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:23:18s. Time for last 1,000,000: 1s. Last read position: chr19:39,878,182
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 257651 as yet unmatched pairs. 76573 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:23:19s. Time for last 1,000,000: 1s. Last read position: chr19:39,886,492
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 257583 as yet unmatched pairs. 76499 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:23:21s. Time for last 1,000,000: 2s. Last read position: chr19:39,891,887
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 257340 as yet unmatched pairs. 76256 records in RAM.
INFO 2026-06-08 09:01:00 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:23:24s. Time for last 1,000,000: 2s. Last read position: chr19:39,894,141
INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 250875 as yet unmatched pairs. 69791 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:23:26s. Time for last 1,000,000: 1s. Last read position: chr19:39,905,763
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 246175 as yet unmatched pairs. 65090 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:23:27s. Time for last 1,000,000: 1s. Last read position: chr19:39,918,428
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 242222 as yet unmatched pairs. 61134 records in RAM.
INFO 2026-06-08 09:01:06 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:23:29s. Time for last 1,000,000: 1s. Last read position: chr19:40,238,929
INFO 2026-06-08 09:01:06 MarkDuplicates Tracking 237758 as yet unmatched pairs. 56669 records in RAM.
INFO 2026-06-08 09:01:08 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:23:32s. Time for last 1,000,000: 2s. Last read position: chr19:41,294,402
INFO 2026-06-08 09:01:08 MarkDuplicates Tracking 233544 as yet unmatched pairs. 52455 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:23:34s. Time for last 1,000,000: 2s. Last read position: chr19:41,717,627
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 232822 as yet unmatched pairs. 51733 records in RAM.
INFO 2026-06-08 09:01:13 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:23:36s. Time for last 1,000,000: 1s. Last read position: chr19:42,271,884
INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 227443 as yet unmatched pairs. 46353 records in RAM.
INFO 2026-06-08 09:01:15 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:23:39s. Time for last 1,000,000: 2s. Last read position: chr19:43,495,256
INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 223882 as yet unmatched pairs. 42773 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:23:41s. Time for last 1,000,000: 2s. Last read position: chr19:45,090,247
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 220013 as yet unmatched pairs. 38902 records in RAM.
INFO 2026-06-08 09:01:19 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:23:43s. Time for last 1,000,000: 1s. Last read position: chr19:46,387,205
INFO 2026-06-08 09:01:19 MarkDuplicates Tracking 216308 as yet unmatched pairs. 35194 records in RAM.
INFO 2026-06-08 09:01:21 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:23:45s. Time for last 1,000,000: 1s. Last read position: chr19:47,694,526
INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 212301 as yet unmatched pairs. 31179 records in RAM.
INFO 2026-06-08 09:01:23 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:23:47s. Time for last 1,000,000: 1s. Last read position: chr19:48,904,425
INFO 2026-06-08 09:01:23 MarkDuplicates Tracking 208733 as yet unmatched pairs. 27611 records in RAM.
INFO 2026-06-08 09:01:25 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:23:49s. Time for last 1,000,000: 1s. Last read position: chr19:49,497,934
INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 206770 as yet unmatched pairs. 25648 records in RAM.
INFO 2026-06-08 09:01:27 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:23:50s. Time for last 1,000,000: 1s. Last read position: chr19:49,795,657
INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 201759 as yet unmatched pairs. 20637 records in RAM.
INFO 2026-06-08 09:01:29 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:23:52s. Time for last 1,000,000: 1s. Last read position: chr19:50,281,729
INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 197782 as yet unmatched pairs. 16660 records in RAM.
INFO 2026-06-08 09:01:31 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:23:54s. Time for last 1,000,000: 2s. Last read position: chr19:53,480,003
INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 194188 as yet unmatched pairs. 13066 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:23:56s. Time for last 1,000,000: 1s. Last read position: chr19:54,631,095
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 190527 as yet unmatched pairs. 9405 records in RAM.
INFO 2026-06-08 09:01:35 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:23:58s. Time for last 1,000,000: 1s. Last read position: chr19:55,660,567
INFO 2026-06-08 09:01:35 MarkDuplicates Tracking 186894 as yet unmatched pairs. 5768 records in RAM.
INFO 2026-06-08 09:01:37 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:24:00s. Time for last 1,000,000: 2s. Last read position: chr19:58,207,124
INFO 2026-06-08 09:01:37 MarkDuplicates Tracking 183209 as yet unmatched pairs. 2082 records in RAM.
INFO 2026-06-08 09:01:40 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:24:03s. Time for last 1,000,000: 2s. Last read position: chr20:1,166,220
INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 179638 as yet unmatched pairs. 45876 records in RAM.
INFO 2026-06-08 09:01:42 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:24:05s. Time for last 1,000,000: 1s. Last read position: chr20:3,801,040
INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 176325 as yet unmatched pairs. 42560 records in RAM.
INFO 2026-06-08 09:01:44 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:24:07s. Time for last 1,000,000: 1s. Last read position: chr20:16,379,171
INFO 2026-06-08 09:01:44 MarkDuplicates Tracking 172946 as yet unmatched pairs. 39180 records in RAM.
INFO 2026-06-08 09:01:46 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:24:10s. Time for last 1,000,000: 2s. Last read position: chr20:20,583,124
INFO 2026-06-08 09:01:46 MarkDuplicates Tracking 169882 as yet unmatched pairs. 36114 records in RAM.
INFO 2026-06-08 09:01:48 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:24:12s. Time for last 1,000,000: 2s. Last read position: chr20:31,757,440
INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 166510 as yet unmatched pairs. 32742 records in RAM.
INFO 2026-06-08 09:01:51 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:24:14s. Time for last 1,000,000: 2s. Last read position: chr20:34,708,790
INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 163033 as yet unmatched pairs. 29262 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:24:16s. Time for last 1,000,000: 2s. Last read position: chr20:35,710,348
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 160210 as yet unmatched pairs. 26435 records in RAM.
INFO 2026-06-08 09:01:55 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:24:18s. Time for last 1,000,000: 1s. Last read position: chr20:38,531,218
INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 156438 as yet unmatched pairs. 22661 records in RAM.
INFO 2026-06-08 09:01:57 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:24:20s. Time for last 1,000,000: 2s. Last read position: chr20:44,521,928
INFO 2026-06-08 09:01:57 MarkDuplicates Tracking 153248 as yet unmatched pairs. 19471 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:24:22s. Time for last 1,000,000: 1s. Last read position: chr20:47,276,604
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 150083 as yet unmatched pairs. 16305 records in RAM.
INFO 2026-06-08 09:02:01 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:24:24s. Time for last 1,000,000: 1s. Last read position: chr20:50,948,628
INFO 2026-06-08 09:02:01 MarkDuplicates Tracking 147022 as yet unmatched pairs. 13238 records in RAM.
INFO 2026-06-08 09:02:03 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:24:26s. Time for last 1,000,000: 2s. Last read position: chr20:58,910,021
INFO 2026-06-08 09:02:03 MarkDuplicates Tracking 144097 as yet unmatched pairs. 10308 records in RAM.
INFO 2026-06-08 09:02:05 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:24:28s. Time for last 1,000,000: 1s. Last read position: chr20:62,813,434
INFO 2026-06-08 09:02:05 MarkDuplicates Tracking 140141 as yet unmatched pairs. 6352 records in RAM.
INFO 2026-06-08 09:02:07 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:24:30s. Time for last 1,000,000: 1s. Last read position: chr20:63,695,479
INFO 2026-06-08 09:02:07 MarkDuplicates Tracking 136129 as yet unmatched pairs. 2339 records in RAM.
INFO 2026-06-08 09:02:09 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:24:32s. Time for last 1,000,000: 2s. Last read position: chr21:8,214,749
INFO 2026-06-08 09:02:09 MarkDuplicates Tracking 133002 as yet unmatched pairs. 25530 records in RAM.
INFO 2026-06-08 09:02:10 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:24:33s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,931
INFO 2026-06-08 09:02:10 MarkDuplicates Tracking 131139 as yet unmatched pairs. 23659 records in RAM.
INFO 2026-06-08 09:02:11 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:24:35s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,343
INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 129806 as yet unmatched pairs. 22323 records in RAM.
INFO 2026-06-08 09:02:13 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:24:36s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,534
INFO 2026-06-08 09:02:13 MarkDuplicates Tracking 129479 as yet unmatched pairs. 21989 records in RAM.
INFO 2026-06-08 09:02:15 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:24:38s. Time for last 1,000,000: 2s. Last read position: chr21:29,327,030
INFO 2026-06-08 09:02:15 MarkDuplicates Tracking 125063 as yet unmatched pairs. 17570 records in RAM.
INFO 2026-06-08 09:02:17 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:24:41s. Time for last 1,000,000: 2s. Last read position: chr21:33,557,161
INFO 2026-06-08 09:02:17 MarkDuplicates Tracking 121925 as yet unmatched pairs. 14431 records in RAM.
INFO 2026-06-08 09:02:20 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:24:44s. Time for last 1,000,000: 2s. Last read position: chr21:39,312,836
INFO 2026-06-08 09:02:20 MarkDuplicates Tracking 118802 as yet unmatched pairs. 11308 records in RAM.
INFO 2026-06-08 09:02:22 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:24:45s. Time for last 1,000,000: 1s. Last read position: chr21:43,565,496
INFO 2026-06-08 09:02:22 MarkDuplicates Tracking 115214 as yet unmatched pairs. 7719 records in RAM.
INFO 2026-06-08 09:02:24 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:24:48s. Time for last 1,000,000: 2s. Last read position: chr21:45,509,469
INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 111869 as yet unmatched pairs. 4373 records in RAM.
INFO 2026-06-08 09:02:26 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:24:50s. Time for last 1,000,000: 1s. Last read position: chr21:46,425,832
INFO 2026-06-08 09:02:26 MarkDuplicates Tracking 108004 as yet unmatched pairs. 508 records in RAM.
INFO 2026-06-08 09:02:29 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:24:52s. Time for last 1,000,000: 2s. Last read position: chr22:19,851,375
INFO 2026-06-08 09:02:29 MarkDuplicates Tracking 105094 as yet unmatched pairs. 47876 records in RAM.
INFO 2026-06-08 09:02:30 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:24:54s. Time for last 1,000,000: 1s. Last read position: chr22:21,628,696
INFO 2026-06-08 09:02:30 MarkDuplicates Tracking 101510 as yet unmatched pairs. 44292 records in RAM.
INFO 2026-06-08 09:02:33 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:24:56s. Time for last 1,000,000: 2s. Last read position: chr22:23,767,540
INFO 2026-06-08 09:02:33 MarkDuplicates Tracking 97843 as yet unmatched pairs. 40613 records in RAM.
INFO 2026-06-08 09:02:34 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:24:58s. Time for last 1,000,000: 1s. Last read position: chr22:25,038,903
INFO 2026-06-08 09:02:34 MarkDuplicates Tracking 93802 as yet unmatched pairs. 36572 records in RAM.
INFO 2026-06-08 09:02:36 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:24:59s. Time for last 1,000,000: 1s. Last read position: chr22:29,278,140
INFO 2026-06-08 09:02:36 MarkDuplicates Tracking 91633 as yet unmatched pairs. 34402 records in RAM.
INFO 2026-06-08 09:02:38 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:25:01s. Time for last 1,000,000: 1s. Last read position: chr22:29,668,402
INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 86946 as yet unmatched pairs. 29715 records in RAM.
INFO 2026-06-08 09:02:40 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:25:03s. Time for last 1,000,000: 2s. Last read position: chr22:31,420,343
INFO 2026-06-08 09:02:40 MarkDuplicates Tracking 83619 as yet unmatched pairs. 26386 records in RAM.
INFO 2026-06-08 09:02:42 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:25:05s. Time for last 1,000,000: 1s. Last read position: chr22:36,288,828
INFO 2026-06-08 09:02:42 MarkDuplicates Tracking 80541 as yet unmatched pairs. 23308 records in RAM.
INFO 2026-06-08 09:02:44 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:25:07s. Time for last 1,000,000: 1s. Last read position: chr22:37,621,649
INFO 2026-06-08 09:02:44 MarkDuplicates Tracking 76859 as yet unmatched pairs. 19626 records in RAM.
INFO 2026-06-08 09:02:46 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:25:10s. Time for last 1,000,000: 2s. Last read position: chr22:38,727,314
INFO 2026-06-08 09:02:46 MarkDuplicates Tracking 73352 as yet unmatched pairs. 16119 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:25:12s. Time for last 1,000,000: 1s. Last read position: chr22:41,176,997
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 70296 as yet unmatched pairs. 13062 records in RAM.
INFO 2026-06-08 09:02:51 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:25:14s. Time for last 1,000,000: 2s. Last read position: chr22:42,214,700
INFO 2026-06-08 09:02:51 MarkDuplicates Tracking 67150 as yet unmatched pairs. 9916 records in RAM.
INFO 2026-06-08 09:02:53 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:25:16s. Time for last 1,000,000: 2s. Last read position: chr22:49,823,922
INFO 2026-06-08 09:02:53 MarkDuplicates Tracking 63228 as yet unmatched pairs. 5994 records in RAM.
INFO 2026-06-08 09:02:55 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:25:18s. Time for last 1,000,000: 1s. Last read position: chr22:50,468,445
INFO 2026-06-08 09:02:55 MarkDuplicates Tracking 59929 as yet unmatched pairs. 2689 records in RAM.
INFO 2026-06-08 09:02:57 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:25:21s. Time for last 1,000,000: 2s. Last read position: chrX:3,311,475
INFO 2026-06-08 09:02:57 MarkDuplicates Tracking 55403 as yet unmatched pairs. 39596 records in RAM.
INFO 2026-06-08 09:02:59 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:25:23s. Time for last 1,000,000: 1s. Last read position: chrX:19,545,992
INFO 2026-06-08 09:02:59 MarkDuplicates Tracking 52356 as yet unmatched pairs. 36536 records in RAM.
INFO 2026-06-08 09:03:01 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:25:25s. Time for last 1,000,000: 1s. Last read position: chrX:40,664,337
INFO 2026-06-08 09:03:01 MarkDuplicates Tracking 49401 as yet unmatched pairs. 33580 records in RAM.
INFO 2026-06-08 09:03:03 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:25:27s. Time for last 1,000,000: 1s. Last read position: chrX:47,209,962
INFO 2026-06-08 09:03:03 MarkDuplicates Tracking 47200 as yet unmatched pairs. 31378 records in RAM.
INFO 2026-06-08 09:03:05 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:25:28s. Time for last 1,000,000: 1s. Last read position: chrX:49,038,238
INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 43657 as yet unmatched pairs. 27835 records in RAM.
INFO 2026-06-08 09:03:07 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:25:30s. Time for last 1,000,000: 1s. Last read position: chrX:53,548,162
INFO 2026-06-08 09:03:07 MarkDuplicates Tracking 40410 as yet unmatched pairs. 24588 records in RAM.
INFO 2026-06-08 09:03:09 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:25:32s. Time for last 1,000,000: 2s. Last read position: chrX:66,189,694
INFO 2026-06-08 09:03:09 MarkDuplicates Tracking 37400 as yet unmatched pairs. 21578 records in RAM.
INFO 2026-06-08 09:03:11 MarkDuplicates Read 642,000,000 records. Elapsed time: 00:25:34s. Time for last 1,000,000: 1s. Last read position: chrX:71,573,679
INFO 2026-06-08 09:03:11 MarkDuplicates Tracking 34421 as yet unmatched pairs. 18598 records in RAM.
INFO 2026-06-08 09:03:13 MarkDuplicates Read 643,000,000 records. Elapsed time: 00:25:36s. Time for last 1,000,000: 1s. Last read position: chrX:97,075,192
INFO 2026-06-08 09:03:13 MarkDuplicates Tracking 31702 as yet unmatched pairs. 15879 records in RAM.
INFO 2026-06-08 09:03:15 MarkDuplicates Read 644,000,000 records. Elapsed time: 00:25:38s. Time for last 1,000,000: 1s. Last read position: chrX:119,399,543
INFO 2026-06-08 09:03:15 MarkDuplicates Tracking 29183 as yet unmatched pairs. 13360 records in RAM.
INFO 2026-06-08 09:03:17 MarkDuplicates Read 645,000,000 records. Elapsed time: 00:25:40s. Time for last 1,000,000: 2s. Last read position: chrX:134,417,179
INFO 2026-06-08 09:03:17 MarkDuplicates Tracking 26077 as yet unmatched pairs. 10253 records in RAM.
INFO 2026-06-08 09:03:20 MarkDuplicates Read 646,000,000 records. Elapsed time: 00:25:43s. Time for last 1,000,000: 2s. Last read position: chrX:153,907,804
INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 23396 as yet unmatched pairs. 7571 records in RAM.
INFO 2026-06-08 09:03:22 MarkDuplicates Read 647,000,000 records. Elapsed time: 00:25:45s. Time for last 1,000,000: 1s. Last read position: chrX:154,360,150
INFO 2026-06-08 09:03:22 MarkDuplicates Tracking 20471 as yet unmatched pairs. 4644 records in RAM.
INFO 2026-06-08 09:03:23 MarkDuplicates Read 648,000,000 records. Elapsed time: 00:25:47s. Time for last 1,000,000: 1s. Last read position: chrX:154,886,978
INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 16279 as yet unmatched pairs. 452 records in RAM.
INFO 2026-06-08 09:03:25 MarkDuplicates Read 649,000,000 records. Elapsed time: 00:25:48s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,209
INFO 2026-06-08 09:03:25 MarkDuplicates Tracking 14799 as yet unmatched pairs. 4148 records in RAM.
INFO 2026-06-08 09:03:26 MarkDuplicates Read 650,000,000 records. Elapsed time: 00:25:50s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,135
INFO 2026-06-08 09:03:26 MarkDuplicates Tracking 10840 as yet unmatched pairs. 189 records in RAM.
INFO 2026-06-08 09:03:28 MarkDuplicates Read 651,000,000 records. Elapsed time: 00:25:51s. Time for last 1,000,000: 1s. Last read position: KI270733.1:129,415
INFO 2026-06-08 09:03:28 MarkDuplicates Tracking 10467 as yet unmatched pairs. 10436 records in RAM.
INFO 2026-06-08 09:03:30 MarkDuplicates Read 652,000,000 records. Elapsed time: 00:25:53s. Time for last 1,000,000: 1s. Last read position: KI270733.1:134,462
INFO 2026-06-08 09:03:30 MarkDuplicates Tracking 714 as yet unmatched pairs. 683 records in RAM.
INFO 2026-06-08 09:03:31 MarkDuplicates Read 653,000,000 records. Elapsed time: 00:25:54s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,711
INFO 2026-06-08 09:03:31 MarkDuplicates Tracking 38 as yet unmatched pairs. 7 records in RAM.
INFO 2026-06-08 09:03:31 MarkDuplicates Read 653115660 records. 0 pairs never matched.
INFO 2026-06-08 09:04:27 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141296; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:04:27 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:04:32 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:04:33 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:05:05 OpticalDuplicateFinder Large duplicate set. size = 1090
INFO 2026-06-08 09:05:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,193
INFO 2026-06-08 09:05:45 OpticalDuplicateFinder Large duplicate set. size = 1374
INFO 2026-06-08 09:05:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,031
INFO 2026-06-08 09:05:46 OpticalDuplicateFinder Large duplicate set. size = 1213
INFO 2026-06-08 09:05:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,735
INFO 2026-06-08 09:05:47 OpticalDuplicateFinder Large duplicate set. size = 1008
INFO 2026-06-08 09:05:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,796
INFO 2026-06-08 09:05:47 OpticalDuplicateFinder Large duplicate set. size = 1258
INFO 2026-06-08 09:05:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,806
INFO 2026-06-08 09:05:47 OpticalDuplicateFinder Large duplicate set. size = 1620
INFO 2026-06-08 09:05:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,377
INFO 2026-06-08 09:05:47 OpticalDuplicateFinder Large duplicate set. size = 1095
INFO 2026-06-08 09:05:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,041
INFO 2026-06-08 09:05:47 OpticalDuplicateFinder Large duplicate set. size = 1186
INFO 2026-06-08 09:05:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,165
INFO 2026-06-08 09:05:47 OpticalDuplicateFinder Large duplicate set. size = 1097
INFO 2026-06-08 09:05:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,160
INFO 2026-06-08 09:05:47 OpticalDuplicateFinder Large duplicate set. size = 1224
INFO 2026-06-08 09:05:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,760
INFO 2026-06-08 09:06:25 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:06:25 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:07:48 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:07:50 MarkDuplicates After generateDuplicateIndexes freeMemory: 203969936; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:07:50 MarkDuplicates Marking 297138063 records as duplicates.
INFO 2026-06-08 09:07:50 MarkDuplicates Found 7451944 optical duplicate clusters.
INFO 2026-06-08 09:07:50 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:08:09 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:18s. Time for last 10,000,000: 18s. Last read position: chr1:21,835,617
INFO 2026-06-08 09:08:26 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:36s. Time for last 10,000,000: 17s. Last read position: chr1:43,359,267
INFO 2026-06-08 09:08:44 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:54s. Time for last 10,000,000: 18s. Last read position: chr1:112,524,508
INFO 2026-06-08 09:09:02 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:12s. Time for last 10,000,000: 17s. Last read position: chr1:154,183,058
INFO 2026-06-08 09:09:20 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:30s. Time for last 10,000,000: 17s. Last read position: chr1:186,676,842
INFO 2026-06-08 09:09:38 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:48s. Time for last 10,000,000: 17s. Last read position: chr1:236,029,563
INFO 2026-06-08 09:09:56 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:06s. Time for last 10,000,000: 18s. Last read position: chr2:32,916,405
INFO 2026-06-08 09:10:14 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:24s. Time for last 10,000,000: 17s. Last read position: chr2:74,886,524
INFO 2026-06-08 09:10:32 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:41s. Time for last 10,000,000: 17s. Last read position: chr2:161,994,967
INFO 2026-06-08 09:10:50 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:59s. Time for last 10,000,000: 17s. Last read position: chr2:219,172,663
INFO 2026-06-08 09:11:08 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:17s. Time for last 10,000,000: 17s. Last read position: chr3:39,407,749
INFO 2026-06-08 09:11:26 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:35s. Time for last 10,000,000: 18s. Last read position: chr3:119,438,041
INFO 2026-06-08 09:11:44 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:54s. Time for last 10,000,000: 18s. Last read position: chr3:195,661,832
INFO 2026-06-08 09:12:02 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:12s. Time for last 10,000,000: 18s. Last read position: chr4:54,278,373
INFO 2026-06-08 09:12:20 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:30s. Time for last 10,000,000: 18s. Last read position: chr4:183,692,995
INFO 2026-06-08 09:12:38 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:48s. Time for last 10,000,000: 18s. Last read position: chr5:108,381,113
INFO 2026-06-08 09:12:56 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:06s. Time for last 10,000,000: 17s. Last read position: chr5:154,803,538
INFO 2026-06-08 09:13:14 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:24s. Time for last 10,000,000: 17s. Last read position: chr6:17,781,281
INFO 2026-06-08 09:13:32 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:41s. Time for last 10,000,000: 17s. Last read position: chr6:33,276,217
INFO 2026-06-08 09:13:50 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:59s. Time for last 10,000,000: 18s. Last read position: chr6:109,129,388
INFO 2026-06-08 09:14:08 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:17s. Time for last 10,000,000: 17s. Last read position: chr7:5,387,864
INFO 2026-06-08 09:14:26 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:35s. Time for last 10,000,000: 17s. Last read position: chr7:75,149,051
INFO 2026-06-08 09:14:43 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:53s. Time for last 10,000,000: 17s. Last read position: chr7:100,994,835
INFO 2026-06-08 09:15:00 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:10s. Time for last 10,000,000: 16s. Last read position: chr7:101,004,250
INFO 2026-06-08 09:15:18 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:28s. Time for last 10,000,000: 17s. Last read position: chr7:150,372,114
INFO 2026-06-08 09:15:36 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:46s. Time for last 10,000,000: 18s. Last read position: chr8:70,156,543
INFO 2026-06-08 09:15:54 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:08:04s. Time for last 10,000,000: 17s. Last read position: chr8:143,859,001
INFO 2026-06-08 09:16:11 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:21s. Time for last 10,000,000: 17s. Last read position: chr8:143,924,081
INFO 2026-06-08 09:16:30 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:39s. Time for last 10,000,000: 18s. Last read position: chr9:83,062,547
INFO 2026-06-08 09:16:48 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:57s. Time for last 10,000,000: 18s. Last read position: chr9:128,612,179
INFO 2026-06-08 09:17:05 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:15s. Time for last 10,000,000: 17s. Last read position: chr10:5,456,748
INFO 2026-06-08 09:17:23 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:33s. Time for last 10,000,000: 17s. Last read position: chr10:80,170,866
INFO 2026-06-08 09:17:41 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:51s. Time for last 10,000,000: 17s. Last read position: chr10:128,104,680
INFO 2026-06-08 09:17:59 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:10:08s. Time for last 10,000,000: 17s. Last read position: chr11:10,768,447
INFO 2026-06-08 09:18:17 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:26s. Time for last 10,000,000: 17s. Last read position: chr11:63,903,995
INFO 2026-06-08 09:18:35 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:44s. Time for last 10,000,000: 18s. Last read position: chr11:75,266,241
INFO 2026-06-08 09:18:55 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:11:05s. Time for last 10,000,000: 20s. Last read position: chr12:2,872,094
INFO 2026-06-08 09:19:15 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:24s. Time for last 10,000,000: 19s. Last read position: chr12:51,197,880
INFO 2026-06-08 09:19:34 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:43s. Time for last 10,000,000: 18s. Last read position: chr12:69,587,588
INFO 2026-06-08 09:19:53 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:12:02s. Time for last 10,000,000: 19s. Last read position: chr12:124,372,043
INFO 2026-06-08 09:20:10 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:20s. Time for last 10,000,000: 17s. Last read position: chr13:112,554,921
INFO 2026-06-08 09:20:28 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:38s. Time for last 10,000,000: 17s. Last read position: chr14:68,912,196
INFO 2026-06-08 09:20:46 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:56s. Time for last 10,000,000: 18s. Last read position: chr14:105,707,254
INFO 2026-06-08 09:21:06 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:13:15s. Time for last 10,000,000: 19s. Last read position: chr15:60,364,464
INFO 2026-06-08 09:21:23 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:33s. Time for last 10,000,000: 17s. Last read position: chr16:53,898
INFO 2026-06-08 09:21:41 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:50s. Time for last 10,000,000: 17s. Last read position: chr16:15,636,004
INFO 2026-06-08 09:21:58 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:14:08s. Time for last 10,000,000: 17s. Last read position: chr16:29,455,831
INFO 2026-06-08 09:22:16 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:25s. Time for last 10,000,000: 17s. Last read position: chr16:67,542,508
INFO 2026-06-08 09:22:33 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:43s. Time for last 10,000,000: 17s. Last read position: chr17:1,675,714
INFO 2026-06-08 09:22:51 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:15:00s. Time for last 10,000,000: 17s. Last read position: chr17:28,172,525
INFO 2026-06-08 09:23:08 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:15:17s. Time for last 10,000,000: 17s. Last read position: chr17:42,998,783
INFO 2026-06-08 09:23:25 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:35s. Time for last 10,000,000: 17s. Last read position: chr17:50,192,480
INFO 2026-06-08 09:23:42 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:52s. Time for last 10,000,000: 17s. Last read position: chr17:63,437,507
INFO 2026-06-08 09:24:00 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:16:10s. Time for last 10,000,000: 17s. Last read position: chr17:81,888,253
INFO 2026-06-08 09:24:18 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:16:27s. Time for last 10,000,000: 17s. Last read position: chr19:1,619,184
INFO 2026-06-08 09:24:35 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:44s. Time for last 10,000,000: 17s. Last read position: chr19:12,705,279
INFO 2026-06-08 09:24:52 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:17:02s. Time for last 10,000,000: 17s. Last read position: chr19:36,143,090
INFO 2026-06-08 09:25:09 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:17:18s. Time for last 10,000,000: 16s. Last read position: chr19:39,918,428
INFO 2026-06-08 09:25:26 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:17:36s. Time for last 10,000,000: 17s. Last read position: chr19:49,497,934
INFO 2026-06-08 09:25:44 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:53s. Time for last 10,000,000: 17s. Last read position: chr20:20,583,124
INFO 2026-06-08 09:26:01 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:18:10s. Time for last 10,000,000: 17s. Last read position: chr20:63,695,479
INFO 2026-06-08 09:26:17 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:18:27s. Time for last 10,000,000: 16s. Last read position: chr21:46,425,832
INFO 2026-06-08 09:26:34 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:18:44s. Time for last 10,000,000: 16s. Last read position: chr22:38,727,314
INFO 2026-06-08 09:26:51 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:19:00s. Time for last 10,000,000: 16s. Last read position: chrX:53,548,162
INFO 2026-06-08 09:27:08 MarkDuplicates Written 650,000,000 records. Elapsed time: 00:19:17s. Time for last 10,000,000: 16s. Last read position: GL000220.1:158,135
INFO 2026-06-08 09:27:24 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:27:24 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:27:24 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:27:25 MarkDuplicates Before output close freeMemory: 104167016; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 09:27:25 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:27:25 MarkDuplicates After output close freeMemory: 104305808; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:27:25 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 49.83 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory