.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:CONTAMINATION_TO_MULTIQC (1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/ff512f618f1193f53a29e98ffe05d4/.command.sh
Size: 439 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:CONTAMINATION_TO_MULTIQC (1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2)
Attempt

Content

#!/bin/bash -euo pipefail
contamination_to_multiqc.py \
    "1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2.predictions.csv" \
    --output "1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2_contamination_mqc.tsv" \
    --sample-id "1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2"

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:CONTAMINATION_TO_MULTIQC":
    python: $(python3 --version | sed 's/Python //g')
    contamination_to_multiqc: 1.0.0
END_VERSIONS