File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/c934f89df5ecf965897a8d422ad0a0/.command.log
Size
3.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (1173_C31_T1_RNA_SLD_01_A23T55JLT4_2)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/45/503758169673f6b79761b4db9d3b84/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/c934f89df5ecf965897a8d422ad0a0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/c934f89df5ecf965897a8d422ad0a0/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/b96ac89d90428ec87630837598e63e/1173_C31_T1_RNA_SLD_01_A23T55JLT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/263c62ee5cb461265dd02a7e30aaa4/1173_C31_T1_RNA_SLD_01_A23T55JLT4_2.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
CABLES1--ABHD3
starfusion
arriba
TLK2P1--AC110079.1
starfusion
ZFYVE27--MT-RNR2
starfusion
TBP--ATXN3
starfusion
TVP23C--CDRT4
arriba
STX16--NPEPL1
arriba
CRYZL2P--SEC16B
arriba
PCDHA4--PCDHA13
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba

  0%|          | 0/10 [00:00<?, ?it/s]
Processing CABLES1--ABHD3:   0%|          | 0/10 [00:00<?, ?it/s]
Processing CABLES1--ABHD3:  10%|█         | 1/10 [00:00<00:00,  9.23it/s]
Processing TLK2P1--AC110079.1:  10%|█         | 1/10 [00:00<00:00,  9.23it/s]
Processing TLK2P1--AC110079.1:  20%|██        | 2/10 [00:00<00:00,  9.44it/s]
Processing ZFYVE27--MT-RNR2:  20%|██        | 2/10 [00:00<00:00,  9.44it/s]  
Processing ZFYVE27--MT-RNR2:  30%|███       | 3/10 [00:00<00:00,  9.51it/s]
Processing TBP--ATXN3:  30%|███       | 3/10 [00:00<00:00,  9.51it/s]      
Processing TBP--ATXN3:  40%|████      | 4/10 [00:00<00:00,  9.53it/s]
Processing TVP23C--CDRT4:  40%|████      | 4/10 [00:00<00:00,  9.53it/s]
Processing TVP23C--CDRT4:  50%|█████     | 5/10 [00:00<00:00,  9.53it/s]
Processing STX16--NPEPL1:  50%|█████     | 5/10 [00:00<00:00,  9.53it/s]
Processing STX16--NPEPL1:  60%|██████    | 6/10 [00:00<00:00,  9.53it/s]
Processing CRYZL2P--SEC16B:  60%|██████    | 6/10 [00:00<00:00,  9.53it/s]
Processing CRYZL2P--SEC16B:  70%|███████   | 7/10 [00:00<00:00,  9.54it/s]
Processing PCDHA4--PCDHA13:  70%|███████   | 7/10 [00:00<00:00,  9.54it/s]
Processing PCDHA4--PCDHA13:  80%|████████  | 8/10 [00:00<00:00,  9.54it/s]
Processing PCDHA4--PCDHAC1:  80%|████████  | 8/10 [00:00<00:00,  9.54it/s]
Processing PCDHA4--PCDHAC1:  90%|█████████ | 9/10 [00:00<00:00,  9.55it/s]
Processing PCDHA4--PCDHAC2:  90%|█████████ | 9/10 [00:00<00:00,  9.55it/s]
Processing PCDHA4--PCDHAC2: 100%|██████████| 10/10 [00:01<00:00,  9.56it/s]
Processing PCDHA4--PCDHAC2: 100%|██████████| 10/10 [00:01<00:00,  9.53it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory