Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/faf713aa7f9b598e8a66046a6c5c9c/1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/559efef0af6bc1a5e0387c143fe1a9/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/559efef0af6bc1a5e0387c143fe1a9/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/2060de38ad44935437caedd78a2177/1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai ==> STAGING COMPLETE (4 inputs) [W::hts_idx_load3] The index file is older than the data file: 1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai Load BAM file ... Done