Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/fece3cf263425570d7efdc0fc98b6d/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/45/503758169673f6b79761b4db9d3b84/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/8337ed7ce51915448f74e0721cced3/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/4793e104b52f09c7397595c9f288e5/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/8337ed7ce51915448f74e0721cced3/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
MYB--ADGRB3
starfusion
arriba
SREBF2--NCLN
starfusion
arriba
DNMT1--ZFR2
starfusion
arriba
TLK2P1--AC110079.1
starfusion
GTF2F1--SCUBE1
arriba
0%| | 0/5 [00:00<?, ?it/s]
Processing MYB--ADGRB3: 0%| | 0/5 [00:00<?, ?it/s]
Processing MYB--ADGRB3: 20%|██ | 1/5 [00:00<00:00, 8.57it/s]
Processing SREBF2--NCLN: 20%|██ | 1/5 [00:00<00:00, 8.57it/s]
Processing SREBF2--NCLN: 40%|████ | 2/5 [00:00<00:00, 8.98it/s]
Processing DNMT1--ZFR2: 40%|████ | 2/5 [00:00<00:00, 8.98it/s]
Processing DNMT1--ZFR2: 60%|██████ | 3/5 [00:00<00:00, 9.11it/s]
Processing TLK2P1--AC110079.1: 60%|██████ | 3/5 [00:00<00:00, 9.11it/s]
Processing TLK2P1--AC110079.1: 80%|████████ | 4/5 [00:00<00:00, 9.16it/s]
Processing GTF2F1--SCUBE1: 80%|████████ | 4/5 [00:00<00:00, 9.16it/s]
Processing GTF2F1--SCUBE1: 100%|██████████| 5/5 [00:00<00:00, 9.14it/s]
Processing GTF2F1--SCUBE1: 100%|██████████| 5/5 [00:00<00:00, 9.08it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory