Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/5d6fc876c16ba284d60eee2cd75675/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/c59d5b139680b190f0eff64cb4ab6e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/c59d5b139680b190f0eff64cb4ab6e/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 290474623
unpaired = 6847983
MERGED PAIRED END READS = 290474623
MATES PROCESSED = 587797229
TOTAL READS     = 297322606
DISTINCT READS  = 1.5525e+08
DISTINCT COUNTS = 1126
MAX COUNT       = 1441553
COUNTS OF 1     = 1.00985e+08
MAX TERMS       = 100
OBSERVED COUNTS (1441554)
1	100985139
2	30241595
3	10980790
4	4843169
5	2520004
6	1478336
7	949475
8	651240
9	468219
10	349178
11	266409
12	209390
13	167887
14	137157
15	112922
16	94953
17	80097
18	68192
19	58834
20	51003
21	44515
22	38744
23	34500
24	30548
25	27396
26	24213
27	21864
28	20037
29	18104
30	16260
31	14933
32	13607
33	12568
34	11534
35	10744
36	9775
37	9136
38	8410
39	7788
40	7299
41	6786
42	6273
43	5957
44	5484
45	5150
46	4814
47	4659
48	4400
49	4059
50	3934
51	3764
52	3452
53	3400
54	3079
55	3002
56	2821
57	2736
58	2514
59	2354
60	2387
61	2175
62	2076
63	2064
64	1984
65	1825
66	1852
67	1632
68	1635
69	1558
70	1490
71	1429
72	1386
73	1346
74	1260
75	1268
76	1157
77	1151
78	1017
79	1029
80	1024
81	985
82	907
83	876
84	842
85	866
86	856
87	776
88	761
89	748
90	746
91	677
92	672
93	673
94	656
95	623
96	599
97	603
98	598
99	556
100	544
101	538
102	513
103	503
104	497
105	445
106	454
107	436
108	427
109	425
110	434
111	413
112	353
113	390
114	386
115	355
116	374
117	359
118	326
119	323
120	306
121	291
122	323
123	285
124	304
125	282
126	296
127	285
128	248
129	276
130	276
131	272
132	227
133	229
134	225
135	199
136	215
137	219
138	199
139	197
140	215
141	212
142	151
143	209
144	195
145	162
146	154
147	185
148	181
149	148
150	166
151	192
152	170
153	148
154	141
155	157
156	156
157	153
158	173
159	145
160	127
161	145
162	129
163	127
164	140
165	121
166	124
167	131
168	114
169	121
170	110
171	135
172	125
173	105
174	115
175	117
176	131
177	98
178	104
179	95
180	106
181	107
182	98
183	103
184	97
185	80
186	78
187	107
188	93
189	88
190	93
191	76
192	89
193	81
194	91
195	73
196	59
197	81
198	69
199	62
200	68
201	65
202	63
203	66
204	72
205	61
206	62
207	61
208	66
209	74
210	44
211	61
212	56
213	48
214	57
215	49
216	52
217	62
218	61
219	51
220	62
221	47
222	55
223	52
224	48
225	59
226	46
227	60
228	49
229	45
230	62
231	49
232	43
233	42
234	42
235	39
236	47
237	47
238	42
239	43
240	37
241	43
242	39
243	49
244	40
245	32
246	31
247	38
248	44
249	33
250	40
251	49
252	34
253	31
254	48
255	40
256	42
257	28
258	38
259	24
260	33
261	28
262	34
263	32
264	36
265	33
266	30
267	39
268	33
269	34
270	32
271	33
272	27
273	39
274	20
275	34
276	30
277	28
278	26
279	28
280	20
281	26
282	37
283	24
284	30
285	27
286	21
287	19
288	24
289	26
290	34
291	19
292	28
293	23
294	17
295	23
296	21
297	32
298	30
299	16
300	9
301	24
302	17
303	17
304	25
305	21
306	22
307	20
308	18
309	16
310	14
311	23
312	17
313	20
314	18
315	26
316	12
317	26
318	19
319	20
320	18
321	20
322	21
323	18
324	15
325	15
326	19
327	13
328	15
329	15
330	17
331	19
332	14
333	15
334	12
335	23
336	20
337	12
338	19
339	6
340	16
341	10
342	15
343	15
344	16
345	15
346	17
347	23
348	19
349	12
350	15
351	10
352	9
353	14
354	12
355	12
356	14
357	11
358	17
359	9
360	12
361	13
362	19
363	15
364	9
365	11
366	4
367	13
368	14
369	7
370	13
371	8
372	15
373	8
374	7
375	12
376	11
377	9
378	12
379	17
380	7
381	10
382	13
383	9
384	10
385	14
386	10
387	11
388	8
389	9
390	7
391	6
392	8
393	7
394	8
395	11
396	13
397	9
398	10
399	10
400	14
401	11
402	9
403	8
404	4
405	8
406	6
407	7
408	5
409	7
410	8
411	15
412	8
413	12
414	9
415	7
416	7
417	9
418	7
419	9
420	9
421	5
422	7
423	8
424	6
425	10
426	10
427	4
428	6
429	8
430	4
431	6
432	14
433	6
434	1
435	9
436	12
437	5
438	7
439	6
440	8
441	3
442	6
443	7
444	3
445	6
446	6
447	8
448	5
449	4
450	8
451	5
452	15
453	10
454	6
455	9
456	3
457	3
458	6
459	3
460	2
461	1
462	7
463	3
464	7
465	4
466	8
467	6
468	3
469	3
470	5
471	6
472	4
473	6
474	5
475	6
476	7
477	5
478	7
479	6
480	7
481	6
482	6
483	3
484	6
485	2
486	4
487	1
488	7
489	4
490	7
491	3
492	4
493	3
494	1
495	3
496	4
497	7
498	3
499	2
500	6
501	7
502	9
503	4
504	4
505	5
506	4
507	4
508	6
509	6
510	3
511	4
512	6
513	3
514	2
515	11
516	3
517	5
518	3
519	4
520	5
521	4
522	4
523	4
524	2
525	2
526	3
527	7
528	8
529	3
530	5
531	4
532	1
533	5
534	3
535	3
536	1
537	4
538	2
539	6
540	5
541	2
542	5
543	3
544	8
545	7
546	3
547	6
548	6
549	2
550	4
551	6
552	2
553	6
554	4
555	6
556	5
557	3
558	6
559	1
560	7
561	3
562	3
563	2
564	5
565	7
566	4
567	6
568	4
569	2
570	3
571	3
572	3
573	2
574	2
575	2
576	4
577	1
578	4
580	1
581	4
582	4
583	4
584	8
585	5
586	2
587	3
588	7
589	5
590	7
591	2
592	1
593	1
594	4
595	5
596	4
597	6
599	1
600	4
601	1
602	2
603	2
604	3
605	2
606	4
607	2
608	1
609	4
611	3
612	1
613	2
614	2
615	1
616	8
617	2
618	3
619	4
620	1
621	1
622	2
623	2
624	1
625	1
626	4
627	4
628	3
629	2
630	4
631	1
632	4
635	3
636	2
637	3
638	1
639	1
641	3
642	3
643	2
644	1
645	2
646	2
647	1
648	5
649	1
650	1
652	5
654	2
655	2
657	1
658	3
659	2
660	3
661	2
662	3
663	3
664	1
666	4
667	1
668	4
669	1
671	3
672	2
673	2
674	2
675	1
676	4
677	1
678	2
679	1
680	2
682	2
683	2
685	2
690	1
692	3
693	3
694	2
696	3
697	2
698	1
700	2
701	3
703	2
704	2
705	1
706	1
707	3
708	2
709	5
710	1
711	1
712	1
713	1
714	1
715	6
716	4
718	1
719	2
720	2
722	1
723	1
725	2
726	4
727	2
728	3
730	1
731	1
732	5
733	1
734	1
737	1
738	4
739	1
740	1
741	2
742	3
743	2
745	3
747	3
748	1
749	3
750	2
753	2
755	4
756	1
757	3
758	1
759	2
760	1
761	3
764	2
765	3
768	3
769	1
771	1
773	2
774	2
775	2
777	1
778	2
779	3
780	1
782	1
783	1
785	2
786	1
787	1
789	1
790	1
791	2
792	2
794	2
795	1
796	1
797	1
799	1
803	1
804	1
806	1
807	1
808	1
809	1
810	2
811	1
813	1
815	1
816	1
818	2
819	2
820	1
824	1
825	2
827	1
828	1
829	1
830	1
837	1
838	2
839	2
840	1
841	3
842	2
843	2
844	1
847	1
851	1
853	1
854	2
855	3
863	2
864	1
866	3
868	2
870	3
873	1
874	1
876	2
877	1
878	2
879	3
881	1
882	1
884	1
885	1
888	1
890	2
894	1
896	1
898	1
899	1
900	1
902	2
904	1
906	1
907	2
908	2
909	3
910	3
911	1
912	1
914	2
915	1
917	1
920	1
921	1
924	1
925	1
926	2
932	2
938	1
939	1
940	1
942	1
943	1
945	1
947	1
949	2
951	1
953	1
955	1
956	1
958	2
960	2
962	2
963	2
966	1
969	1
971	3
973	2
974	1
975	1
986	1
989	1
991	2
994	1
998	1
1000	2
1003	1
1007	1
1008	1
1012	4
1014	1
1015	1
1016	1
1019	1
1020	2
1021	1
1025	1
1028	1
1029	1
1030	1
1034	1
1036	1
1037	2
1038	1
1044	1
1045	1
1051	1
1055	1
1056	1
1059	1
1060	1
1061	1
1066	1
1078	1
1079	1
1083	1
1089	1
1092	1
1094	2
1096	1
1098	1
1099	1
1109	1
1114	1
1117	1
1118	1
1125	1
1130	1
1131	1
1135	1
1136	1
1139	1
1140	1
1141	1
1142	1
1145	1
1148	1
1151	1
1152	2
1157	1
1160	1
1163	1
1164	1
1165	1
1168	1
1169	1
1173	2
1174	1
1176	2
1184	1
1185	2
1188	2
1190	1
1191	1
1195	1
1196	1
1197	1
1199	1
1202	1
1203	2
1205	1
1213	2
1214	1
1216	2
1223	1
1232	1
1237	1
1240	1
1253	1
1258	1
1260	1
1262	1
1264	1
1268	1
1272	1
1275	1
1276	1
1287	1
1289	1
1290	1
1291	1
1301	1
1302	1
1308	2
1315	2
1316	1
1324	1
1327	1
1329	1
1332	1
1337	1
1353	1
1357	1
1368	1
1369	1
1372	1
1373	1
1382	1
1383	1
1385	1
1400	1
1407	1
1413	2
1422	2
1427	1
1430	1
1444	1
1445	1
1458	1
1459	1
1462	1
1467	1
1472	1
1474	1
1482	1
1489	1
1495	1
1506	1
1507	1
1510	1
1511	1
1512	1
1514	1
1523	1
1524	1
1528	1
1536	1
1544	1
1545	1
1555	2
1556	1
1564	1
1569	1
1578	1
1580	1
1585	1
1586	3
1591	1
1608	1
1626	1
1632	1
1641	1
1642	1
1644	1
1658	1
1677	1
1683	1
1686	1
1687	1
1691	1
1695	1
1699	1
1710	1
1713	1
1719	1
1741	1
1743	1
1744	1
1759	1
1762	1
1786	1
1791	1
1792	1
1812	1
1834	1
1843	1
1849	1
1875	1
1886	1
1895	1
1897	1
1912	1
1913	1
1916	1
1920	1
1930	1
1938	1
1944	1
1969	1
1974	1
1993	1
1994	1
2048	1
2067	1
2097	1
2115	2
2143	1
2172	1
2210	1
2237	1
2262	1
2271	1
2289	1
2298	1
2300	1
2316	1
2389	2
2405	1
2420	1
2432	1
2458	1
2528	1
2608	1
2610	1
2620	2
2630	1
2658	1
2666	1
2712	1
2717	1
2726	1
2740	1
2774	1
2810	1
2846	1
2885	1
2891	1
2899	1
2918	1
2925	1
2960	1
2963	1
2994	1
3040	1
3066	1
3074	1
3108	1
3125	1
3132	1
3137	1
3180	1
3191	1
3197	1
3238	1
3268	1
3294	1
3398	1
3543	1
3615	1
3644	1
3823	1
3861	1
3969	1
4193	1
4390	1
4429	1
4621	1
5409	1
6314	1
6402	1
7700	1
9517	1
16964	1
27893	1
91302	1
1441553	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
...._...................................................................
.............._.............._.
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]