File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/98b0a3c345ac90c9fba8f81e25ddeb/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:55:17
                             Started mapping on |	Jun 08 11:02:04
                                    Finished on |	Jun 08 11:46:32
       Mapping speed, Million of reads per hour |	395.76

                          Number of input reads |	293303435
                      Average input read length |	219
                                    UNIQUE READS:
                   Uniquely mapped reads number |	279145443
                        Uniquely mapped reads % |	95.17%
                          Average mapped length |	218.48
                       Number of splices: Total |	229541530
            Number of splices: Annotated (sjdb) |	226446930
                       Number of splices: GT/AG |	227034750
                       Number of splices: GC/AG |	1456173
                       Number of splices: AT/AC |	152281
               Number of splices: Non-canonical |	898326
                      Mismatch rate per base, % |	0.27%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.77
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.71
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8836672
             % of reads mapped to multiple loci |	3.01%
        Number of reads mapped to too many loci |	800937
             % of reads mapped to too many loci |	0.27%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	4006191
                 % of reads unmapped: too short |	1.37%
                Number of reads unmapped: other |	514192
                     % of reads unmapped: other |	0.18%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%