Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/3a418c06a0ea2e32f43c5576537ae9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/3a418c06a0ea2e32f43c5576537ae9/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/78b9b7248ed477c45cdc4cbb1b53b1/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/5d298b7528f78dc4019c240b840ae9/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 1173_CH0_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (1171343) splicing reads. 134226 splicing junctions. 125002 known splicing junctions. 9224 novel splicing junctions.
sampling 10% (2342686) splicing reads. 157773 splicing junctions. 142121 known splicing junctions. 15652 novel splicing junctions.
sampling 15% (3514030) splicing reads. 171623 splicing junctions. 150522 known splicing junctions. 21101 novel splicing junctions.
sampling 20% (4685373) splicing reads. 181712 splicing junctions. 156123 known splicing junctions. 25589 novel splicing junctions.
sampling 25% (5856717) splicing reads. 189663 splicing junctions. 159989 known splicing junctions. 29674 novel splicing junctions.
sampling 30% (7028060) splicing reads. 196058 splicing junctions. 162956 known splicing junctions. 33102 novel splicing junctions.
sampling 35% (8199404) splicing reads. 201618 splicing junctions. 165388 known splicing junctions. 36230 novel splicing junctions.
sampling 40% (9370747) splicing reads. 206348 splicing junctions. 167363 known splicing junctions. 38985 novel splicing junctions.
sampling 45% (10542091) splicing reads. 210506 splicing junctions. 169014 known splicing junctions. 41492 novel splicing junctions.
sampling 50% (11713434) splicing reads. 214106 splicing junctions. 170394 known splicing junctions. 43712 novel splicing junctions.
sampling 55% (12884777) splicing reads. 217114 splicing junctions. 171555 known splicing junctions. 45559 novel splicing junctions.
sampling 60% (14056121) splicing reads. 219736 splicing junctions. 172532 known splicing junctions. 47204 novel splicing junctions.
sampling 65% (15227464) splicing reads. 222017 splicing junctions. 173338 known splicing junctions. 48679 novel splicing junctions.
sampling 70% (16398808) splicing reads. 223966 splicing junctions. 174046 known splicing junctions. 49920 novel splicing junctions.
sampling 75% (17570151) splicing reads. 225599 splicing junctions. 174641 known splicing junctions. 50958 novel splicing junctions.
sampling 80% (18741495) splicing reads. 226952 splicing junctions. 175135 known splicing junctions. 51817 novel splicing junctions.
sampling 85% (19912838) splicing reads. 228013 splicing junctions. 175506 known splicing junctions. 52507 novel splicing junctions.
sampling 90% (21084182) splicing reads. 228892 splicing junctions. 175812 known splicing junctions. 53080 novel splicing junctions.
sampling 95% (22255525) splicing reads. 229454 splicing junctions. 176002 known splicing junctions. 53452 novel splicing junctions.
sampling 100% (23426869) splicing reads. 229776 splicing junctions. 176134 known splicing junctions. 53642 novel splicing junctions.
null device 
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