File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/6e38c1bf047d1d0a63da25bc7487aa/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/6e38c1bf047d1d0a63da25bc7487aa/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/6e38c1bf047d1d0a63da25bc7487aa/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/fd5ae394971b5629b4a2bd57f405eb/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/4888a2ec9f2b03410d91e5bac65e77/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1/abundance.h5
Successfully converted 1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1/abundance.h5 to 1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1_kallisto_mqc.tsv
  Sample: 1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1
  Mean Fragment Length: 111.5 bp
  Median Fragment Length: 105.0 bp
  pct_mito_est_counts: 0.007%
  pct_ribo_est_counts: 1.95%
  pct_hk_est_counts: 0.416%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.014%
  pct_ribo_tpm: 5.587%
  pct_hk_tpm: 0.683%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.009%