File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/c4549ec15652dd3169157f63a4d7c5/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 11:35:50
                             Started mapping on |	Jun 08 11:42:17
                                    Finished on |	Jun 08 12:23:54
       Mapping speed, Million of reads per hour |	425.08

                          Number of input reads |	294836827
                      Average input read length |	222
                                    UNIQUE READS:
                   Uniquely mapped reads number |	280014409
                        Uniquely mapped reads % |	94.97%
                          Average mapped length |	221.56
                       Number of splices: Total |	252965486
            Number of splices: Annotated (sjdb) |	249536868
                       Number of splices: GT/AG |	249830450
                       Number of splices: GC/AG |	1745030
                       Number of splices: AT/AC |	271275
               Number of splices: Non-canonical |	1118731
                      Mismatch rate per base, % |	0.25%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.97
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.49
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	9809494
             % of reads mapped to multiple loci |	3.33%
        Number of reads mapped to too many loci |	973978
             % of reads mapped to too many loci |	0.33%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	3661916
                 % of reads unmapped: too short |	1.24%
                Number of reads unmapped: other |	377030
                     % of reads unmapped: other |	0.13%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%